G119557


Basic Information

Item Value
gene id G119557
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 25262362 ~ 25333175 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU149859
tgtgtgtatatatatatatatatttttttttttttggtaacctaaaacTACCATTAACGCACAAGAATAATACTAGCATCTGTGAATGCTTACATCGGAGAGAGCATAGGTCAGATATGAataataaaggtttatttttataacttttttttttctccagtgtcTCATTGTTAAACTGAATCAATCTGGCAGTACATTAGTTGGGGTAGTGTGAAGAGAGGGTAATAATGACTTCTTAACACATTAATTTTGCCCCCCTTATTATGATCTTATTCATGCCCGCAATGAAAGTCCTCAAGCCATCTTCTCAATAAACCTCTCTATATGAATCAGGTAACTCGGTTGTGAAAGGTTTTTAGTGTTACTGTTACTTTCACATGGCTGACATCAGGATGTGTTTGTCTTCTGTAGatctgtactgtgtatgtgCATAACTTTCTGTGcagctgatttattttgtaatttaaactcAACTTTTACATGTACTGTGTACATGtcgattttatttaaattgctcaTCATGCTTGTAACAGGCAttatttgtggttttttttttttttttttaagcttctcACTAGTGAAACCAATAaattttgattttcatttgacTATTCCTGTATTGATATGCTCAGCTCAATCGTGATTTGGAGGATCTGTGTGCTACCCAGTTAAGGTATAGAGAACTGAGACCCTTGTGCTATTGTGCCTGCTTTCCATATAGTCCTGATGTCTTTCATACCTTTTAAACCCATTGTGATCAAATGTAGTGCACAGGTATGTCATTATTCActcataacatgcttcacaatTAGGCTGGGAGGGATGTCATTATTACTGAAATGCACTTTACTTCAGCTACCAATAGATCTATAGCCTAATCACTGGCCACTTGACTGACACTCACATGTGGtgatctatatatttttgtaattgcatttttccAGTTGGGTAACTAACACTGACTCTGACTCTTTGTGGAAAATCACTAAACACATGGCATGGCTTTCCATGCCAAGTAAGCTTTCTGCTGAAAGAACCAGTTGCAGATCAGTGCCTGTATTCAGTCACAAATGTGTGGTTTTGGTTAAATTGAATCAACTGCTTTGAGAGTTGagaaacattatttcaaattaagtgaATAATAATCTTCCCAATACTGTAAACTGCCACGGAGCAGTTCAGGACCCACATGGTCAGTGTTGTGCAGTGCACTTGGGATTAACAGccacacaaataaacaagggCTGGACACTGGGTAGCAGACTGAGACCACCACTGCGCTCGACGGCCGTGCGTGCTGGTTGAGATGCAGGTGCACCAAAGACATGTATTTCCTTGGCTTCATCTCATTTGTTACTTGTCTGttttaaaatctaaagaaaTACTGTAATGTAAAGAGAGTCTgcttagtgttttttgttctttcaaaaTCTTGTATTCGATTTGCTCCCATTTCGATTTGCCttggacatatttatttttctcccctttGATAATTGTGGTCTGTGCATAAGTGTTATCAAAGGGGCACAGAGCCAGCGACTGATTTCATAAGCAGCCTCAGTGTTCAGGAGTTTGAAAACTAGGTGGTCTTGCTTCACTGATGAAAAATGGGAGTTTAGCATTTTGCTTTCTAAATTCTAGAGTGAAACCAAAGTAGGTAAGGTAAGCCATAATGAAGCGTGAGCTGGACACTCCCTCTAATGTCCCTTGTCCCTAGCAATGCTGTACACTGTTTTAAAGTTGGCAACTCTTAAAAACCCTAAAACAAAAATTGCATACAAAAGTCTATGAAGTTTTACTACTTCTCTTCAGGTAAACAACAAGGTGAATTTGAATGGTTAAATTACTGTAGGATGCACTACATAGAAGGGagtatttctttttcattcgatttccacaattaaaaaaatgggaaagtacttttttaattgtggaaatttgaatgaaaaataaatatatataacaattactAAGCTAGATGCCATGCTCTTATGAATATCGGTCGAATGGAGTCTCTGCATGACGAGCTTGATCTTTGTTAAAGCTGTTTGTACCTCTGGGATTTGCTTCTCTACACCTCTGGTGCTCGCACTGCGGTCTGCTTTACTGTATGCTTCTgtgcatctccaaaactgtagcCCTGGGTTTGAGGCAGCAAAATGTAAGCTAACATCAAGAATCTTATAGCTGTTTTCAGAGACCTGTGCAGGTTAGAACTAGCCTTGGACTgctctacctaaaataatattagGTAGTCCCAGACTAGTGCTAacctgtgaaaccagcccttagTGTTGTCCTTTTGGCTTCAATCCTTTCCAAAGCctaaaaactataataaatgtaaaatctggATGACTTCTGGAATTCAGATTGCAAGATGTTTAGTGCCACTTATGTTTAAAGCTGGAGGTGATAGATGTGCAGTATAGGGTTCAAATTCTGTCTGAGACTCTGCTCTCCtaccttcccttcccttccctagATGGCTCCAGCAAAAACGCAGCTGTGTAAATGAGCCCCTATATACGTGGCTTTGGAGAAAATCTGCCAAaggcttaattaaaaataagaacatttttgtttgtgtttttgttggcaaGATgttttcagcctccagttttaATGTGTGAATTGGGCTGGCAGTTGTGGGGACCGGAGTAAGCCTTAGACTAGTCCAAACGGGCACCATATCGGCCTTAAACGACGAATCCAGTTCTGTGTTGTAAGCAGCCTCATTGCAAAGCCAGCTTATCCCTGTCTCCAGCATGTAGAAGGCCGTCCCGTGTCCTGTTCTTAAACTCTCCGCTCGTGTGGGGGTGCTTCTGACGTCGAGATTAGGTTCTTGACACTTTTGCGTAGGCAGCGTCGTGGGAGAACTGCACATGCTTTTTGTTgtgtacaaatacaataatgcagGAATAgtttctgtaaatatattttaagagctgtaaaatattta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU149859 True 2965 lncRNA 0.39 2 25262362 25333175

Neighbor

gene id symbol gene type direction distance location
AMCG00018905 vps29 coding downstream 18082 25238897 ~ 25244280 (-)
AMCG00018906 gpn3,LOC106566318,LOC106563155 coding downstream 36503 25220104 ~ 25225859 (-)
AMCG00018903 arpc3,LOC107737855,LOC107707141 coding downstream 44539 25213639 ~ 25217823 (-)
AMCG00018904 anapc7 coding downstream 58687 25193164 ~ 25203675 (-)
AMCG00018896 NA coding downstream 189246 25071542 ~ 25073116 (-)
AMCG00018916 NA coding upstream 156269 25489444 ~ 25533356 (-)
AMCG00018917 NA coding upstream 214367 25547542 ~ 25553092 (-)
AMCG00018920 NA coding upstream 263361 25596536 ~ 25600663 (-)
AMCG00018925 slc35e4 coding upstream 1011455 26344630 ~ 26356608 (-)
AMCG00018926 NA coding upstream 1034175 26367350 ~ 26410785 (-)
G119466 NA non-coding downstream 217018 25044951 ~ 25045344 (-)
G119426 NA non-coding downstream 420241 24836787 ~ 24842121 (-)
G119382 NA non-coding downstream 653900 24519413 ~ 24608462 (-)
G119384 NA non-coding downstream 694063 24566146 ~ 24568299 (-)
G119235 NA non-coding downstream 2150842 23109601 ~ 23111520 (-)
G119600 NA non-coding upstream 145835 25479010 ~ 25479524 (-)
G119615 NA non-coding upstream 238879 25572054 ~ 25578122 (-)
G119632 NA non-coding upstream 257397 25590572 ~ 25656954 (-)
G119637 NA non-coding upstream 271856 25605031 ~ 25606144 (-)
G119655 NA non-coding upstream 385411 25718586 ~ 25718976 (-)
G119545 NA other downstream 74954 25186207 ~ 25187408 (-)
G119538 LOC108444117,LOC105014832,LOC106563153 other downstream 90718 25134771 ~ 25171644 (-)
AMCG00018898 NA other downstream 177776 25075398 ~ 25084586 (-)
G119144 NA other downstream 2456024 22804345 ~ 22806338 (-)
G118936 NA other downstream 3148667 22080464 ~ 22113695 (-)
AMCG00018929 NA other upstream 1118549 26451724 ~ 26485315 (-)
AMCG00018930 NA other upstream 1444460 26777635 ~ 26797720 (-)
G119827 NA other upstream 1480305 26813480 ~ 26814073 (-)
G119893 LOC101154678 other upstream 1897698 27230873 ~ 27242574 (-)

Expression


Co-expression Network