G119574


Basic Information

Item Value
gene id G119574
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 25485845 ~ 25488149 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU149876
TCTAAAGAGTAGAACCTTGTTAgtgaaattgcatttgtttctcctttgaaaaaaatatattgaggTTTACAATACTGGCCTGAGACAGGGAAAGGGGCAGATACACTTTACATGGTCAAAGTTTACACCACATCTCATTCCTACCGGTTACCGCGGTTCTGCTTGTCTATGATCTACCTGTGTTGTCCATGCAAAGCAAAGTAACTTTGGGTCACCTTCACCCCAGAAAAGGCCAAGACTTTACTGATTGTTTGCTGAACAGGTGAAGAATAAAATGTTCTGGGAATTTGTTTCTTCAtcccatttgaaaatgtgtgtgaagTGCATTGAGGCACCCTGACATCAATTTCTGAAGTTTGTTTTAAGAGAACAATTTTCAGACACTCTTCAAACCATCCCATCTTTACACCAACGTGTTTCTGTGTCCATGGCCTAAAGCAATAATACTACAGGTCCTGAATGGACAGAGACACTGTCCTTTGTAGGGTTCCACTGCAAAACTGGCCATAACCaccattttgtgttattttaaattcacttgtaaaaaaacaacaaaactataaaataaataaataaataaatgctgtgaAAACTGGACCCAAATAGGATTAGTGGACATTAGTGGCACTGCAAACTTCATGTCCAGTTGCCAAGCTTACATTAAAGTAACAAATAGTTTGCTAGCCATTGTGTAATAACCACAAGTTTTTGCTTTTGGTCATACTACTACTAGTTTAAAGTTCCTTGGTTCCAATTGTGTGGCTGACATACAACTTTACCTGTAGTCCTAACTTCACTATGGAGAGTGATCTACAATTTCTCTTGAgcaaatgaagacaaaaaaacaaaaacaaaaaaaaaaaaaacctttctttATGATAAGCTGTAGGTTTGAAATACACGAGTTTCCCAATGCCAGTGTTTTTACTAGTCTTTTCTTGATTATGTATCATTGAAATTGGTAATAAACACGTGCAATCCACCAGTCAGTCATGTAGTTCTGCTCTGAAAACTTGCaatttttccttgttttctcaGGATAGCCTTTgtcataaaacatcttaaacaaGGACCAGGGCAGTGATGTTATACTTCAGAGGCTGGGCAGAATTTGCTGGTTTCTTGAGTCCAGCTGGTTCACTTTAACCAGTGCAAGCCCGAATGCTTTGTCACCTGAAGTGCATTGCCACTGGGTCCCTTTCCAAGACACCAAATGAGGTTCATTTTCCATTGATGCAGTGGACACTAAATGGACCAAGCTCATTTGAGAGAGAACCAAAGTCCGTTCCTTGAATCTTTCTCCACCTATTTCCTTCTAGAGGAACTGTATTTATAAAACCATTGTTTGCATGGTTGTCATTTGGACCAGAATTATGCAGAGACTGATGTTCACTGATGTTTCTCCTTAAAGCCAGTGAGGACAGACCgaccagatttgtttttgtgaactTCCCTCTTTTTGGTTCAATTCGGATTTGAGCTTGTCATTGAGCAAACACTCAAAATTGCCCTAGTGTGAACGTGGCTTAATAGCCCATCTCTTACCTGTAGCTTGCATCACAAAATGCTAGTACCTAATGTAAGAGATACTAGATAAAGTCCGTTTCCAACTAAAAAGGCCATTCACAAACCACCGGGGAACAAGCTGCACGTTACAGCCAGGCAGCCATGTCAGGACTGCAAAATGTCTTTTTCTATTaagtgatattttattaaaggacGAGCCTCcattatttaacaaatatgaatcaGACTTTGCACAATTTAAGCTTTCTGTGAAAATCCCTGAAGCCTGATGCCACAGGTTCTTCAGAGGACTGATTTGTACATGGTCATCTTTGTTTGGGTTGTTGAAAAGCCATTGATGGAGTGAGACCCGATTTGAAAGCCCTCTCATGGGCCCATAGTCACTCGCAATCCCCATTTGCCCATGAACCCCACAGCATCCACCCCTCTCCCGTTTCTGTCCCCACGGATCACACATACTTAATCAAGGGAAGAGATGTGGATATCTGATTTTAGCCCAACAGGACGAAGCACTTGAACCCTATGTACTCGTCTGAATTTAGTCGTCGTTTGGACAGCCCCCACTCTCCATGTGGTTCCTCATGGTGTGATTTTGCTccgatttgaaaaaaaaaaaaaaggaggaacAATAAACACAAGTCACAAACTGAGgcctaaaagaaacaaacaaacagccttGAACTGCACTATGACCCCTTTTGCCTTGTGCTTCCTGAACCCAATtttgtgtttgatgtttttatttactgttgaaataaaaaacaatacattacaataa

Function

NR:

description
PREDICTED: ATP synthase subunit a-like isoform X24

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU149876 True 2305 lncRNA 0.40 1 25485845 25488149

Neighbor

gene id symbol gene type direction distance location
AMCG00018909 NA coding upstream 191688 25287408 ~ 25294157 (+)
AMCG00018900 NA coding upstream 224563 25245645 ~ 25261282 (+)
AMCG00018901 LOC103152401,LOC106931442,LOC103469522,LOC102221826,LOC101074150,LOC101161315,LOC105014186,LOC106579958,LOC103397036 coding upstream 272690 25203672 ~ 25213155 (+)
AMCG00018902 LOC103365013,LOC102776280 coding upstream 297003 25171485 ~ 25188842 (+)
AMCG00018908 NA coding upstream 341047 25136587 ~ 25144798 (+)
AMCG00018915 NA coding downstream 45954 25534103 ~ 25544880 (+)
AMCG00018914 NA coding downstream 67307 25555456 ~ 25582394 (+)
AMCG00018918 mtfp1,LOC102779258 coding downstream 96167 25584316 ~ 25592691 (+)
AMCG00018919 NA coding downstream 113770 25601919 ~ 25611337 (+)
AMCG00018921 med13l coding downstream 140588 25628737 ~ 25642468 (+)
G119529 LOC108239856,LOC103139559,LOC107385499,LOC103366907 non-coding upstream 147656 25331390 ~ 25338189 (+)
G119523 NA non-coding upstream 172350 25303186 ~ 25313495 (+)
G119429 NA non-coding upstream 634795 24850836 ~ 24851050 (+)
G119416 NA non-coding upstream 650136 24799950 ~ 24835709 (+)
G119419 NA non-coding upstream 676026 24807747 ~ 24809819 (+)
G119669 NA non-coding downstream 551130 26039279 ~ 26078413 (+)
G119682 NA non-coding downstream 619320 26107469 ~ 26107849 (+)
G119684 NA non-coding downstream 624723 26112872 ~ 26113131 (+)
G119703 NA non-coding downstream 788236 26276385 ~ 26276585 (+)
G119750 NA non-coding downstream 954044 26442193 ~ 26444060 (+)
AMCG00018913 NA other upstream 399 25466091 ~ 25485446 (+)
G119507 NA other upstream 218064 25234082 ~ 25267781 (+)
AMCG00018820 NA other upstream 3588145 21848370 ~ 21897700 (+)
G118815 NA other upstream 4296599 21187956 ~ 21189246 (+)
AMCG00018802 dnah10,LOC102798403,LOC105907537,LOC105907538 other upstream 4713259 20723610 ~ 20772586 (+)
AMCG00018922 med13l other downstream 190528 25678677 ~ 25718426 (+)
G119762 NA other downstream 972471 26460620 ~ 26461227 (+)

Expression


Co-expression Network