G119817


Basic Information

Item Value
gene id G119817
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 26777653 ~ 26778660 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU150151
TATCCAGCAGCCTAGAACCTTTACATAACCCGCCAAGGAGACAAAGTGTATCAATGTAATGGACAGAGAGATTAGGActgcaaacagaaacacaaacagaagtgCACATCCAGAGCTACATATTATCTAGAAAGGTCTTGCCAAATCAGAAGACCACTTCCTCAGACTTTCTGAAAGCAGTGTCAATGAACAgatacataaagaaataaagtttACCATTCACTCAAAGGTCTTCCATTCCCATTTGAACATACCATACAATATAATCCACCAATAATTCCCTAGGGCAACAATTtagaatgcaaataaataaataaatagaactTTCCACAACATAATTTCCACTCATTACACAAAAAACGCTCTAACAATATCCAACAACTAAAATCAGAATCTCCATGGGAATACTGTAGGCACAGATCCAGTAGATAAGCTTCCACTGACGTCTActttattccttttaaaatcatGGCTTTATGgcagtgttacatttttaaattccttaATGAAATTGACTGTGATCCCTTTCACCCAAatttgaaatgctgtaaagCCAATTTCTTCAAGAAGGAACTTTTTTAATTTGGAGACTGCATGTATGAAGTCCCAGGTTAACTAAACACCttggctaaataaataaaaaactaatgATTCATAGTTACTACTTCCAgaacattgttatttatttattttgaatggttAATATGAATGGTAGCTTCTGGTCTTTGTTTAGCCAAGATATATACTACAATTGATACTGATATTCAATACAAAACTCATGGTGAAAGTCAATAGAAATATTGAACAATATtggacaattaaaacaaaaaagtaaaagggATTAAAATTACACTATACACCTTTAGCCATTAGAAAACACAGTGTTAAAAGGTTTAAATGACATTCCATCATattcaaaactgaaagaaacttCATCAGACAAAAGGTCTTGAATTAAAACCTATCACTGATCTTCTATTAGTTTTCCGTTACTGTTAacctcccccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU150151 True 1008 lncRNA 0.33 1 26777653 26778660

Neighbor

gene id symbol gene type direction distance location
AMCG00018927 NA coding upstream 339340 26431716 ~ 26438313 (+)
AMCG00018924 tbx5,tbx5a,LOC107670381,LOC101474152 coding upstream 584169 26153655 ~ 26193484 (+)
AMCG00018923 tbx3,LOC106563287 coding upstream 700391 26065643 ~ 26077262 (+)
AMCG00018921 med13l coding upstream 1135185 25628737 ~ 25642468 (+)
AMCG00018919 NA coding upstream 1166316 25601919 ~ 25611337 (+)
AMCG00018934 NA coding downstream 94190 26872850 ~ 26875837 (+)
AMCG00018936 NA coding downstream 269106 27047766 ~ 27048707 (+)
AMCG00018935 NA coding downstream 270186 27048846 ~ 27049202 (+)
AMCG00018939 dtx1 coding downstream 295136 27073796 ~ 27075433 (+)
AMCG00018942 NA coding downstream 423292 27201952 ~ 27202650 (+)
G119816 NA non-coding upstream 1454 26775743 ~ 26776199 (+)
G119786 NA non-coding upstream 144936 26632502 ~ 26632717 (+)
G119779 NA non-coding upstream 214640 26562791 ~ 26563013 (+)
G119750 NA non-coding upstream 333593 26442193 ~ 26444060 (+)
G119703 NA non-coding upstream 501068 26276385 ~ 26276585 (+)
G119820 gas2l1,LOC106580329 non-coding downstream 46555 26825215 ~ 26826592 (+)
G119834 NA non-coding downstream 66029 26844689 ~ 26849498 (+)
G119836 NA non-coding downstream 70966 26849626 ~ 26855442 (+)
G119897 NA non-coding downstream 502346 27281006 ~ 27281572 (+)
G119941 NA non-coding downstream 735659 27514319 ~ 27515546 (+)
G119762 NA other upstream 316426 26460620 ~ 26461227 (+)
AMCG00018922 med13l other upstream 1059227 25678677 ~ 25718426 (+)
AMCG00018913 NA other upstream 1292207 25466091 ~ 25485446 (+)
G119507 NA other upstream 1509872 25234082 ~ 25267781 (+)
AMCG00018820 NA other upstream 4879953 21848370 ~ 21897700 (+)

Expression


Co-expression Network