G119825


Basic Information

Item Value
gene id G119825
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 26810884 ~ 26812556 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU150161
gcaaaagaggacgaacctgcgctgacgtcacgttttatggaacaggatgtgggaagggacctgttctgagtgacaagcgcaggggccaatggcagctttgatagagtgatgtttcgatcaggttcctacggcagtgcgcagaaacccctcccccttgggtagtgctcctttttcagataactggggttacatatgcaacctatcgttctttcctattgtgtttatcaatgtcctcattattttctgtgtgcatttccagtattttgttgtaaacgaatacataatttagtcatggaaaatcagaaaatgataatgaaaaagtcatggaaaagtcatgaaaaaaaaaaatctgatttccaTAGGAACCCTGTAAATTGCCCTTGGGTAGCAATGACTCGTCAGTCTTTGGGGTGTGGGTGCACTTAGTCCTCCGTGGTCAGATGCCTCATCAgccctctggggtgggttgtacTTTTTGGCCTGCCAGGGTGGAGGTCTAGGTGGCTTGTCAGACACTCAGAGGGGGCTGAGAAAAGAAAATTGTGCTCATCATAAAATGCAGATGACAATACAATTGTGTATAGCGTGTTCATGGCAGACCAGTGGCACAATGGGTTATAATAGCTGGAAAAATAGAGAGTAGAAAGATGAGtattcagccgtgatttaaagactaagacagagggggcatctcttataTAGGCTGGAAGATTGTTCCATATTTTGGGGGCCTATAATTAAATGCTCTGCCACCTGcgtttttcttgtgtattttagggaccactaagtaacaGGCTTCCTGGGATCTTAATGGCCAGCCGATATTAAACCATTACACACTTAAATGAACAAGGCTTTAACATATTTCATTACAGTATACCTCACTTGTATACTACACCATAACTTAATATCTACAAtcttaatagaaaatgtaactaCATTTTCCTTACAACATACTTTGCAGTTGATTTGTTCTTGGTTTGTATGCCCTTCTGTCCTGTAACTTTGTATATAAAGATCAATGTACCTTGAGAACTGTCATTGTGGATATAAAGTTATTAAGAGCATAttctatttattatataatgaatgcaagaaaaaactaatttgtcagCACACAGGTTTTCTGATGAAGGGCAGTTGAATACACAGAAGGAACTTTTTTGATCAAGTTTAAGTGGTTCTAAGATGAGACTgaatcagattatttatttatttatttatttattacatttatttggtgACTTATGTAGTTAGCTATTAGTTTACAATGTTGTCCCATCAATTGGATTATAAACACAGTTTCTACTGATTTAAGACTGCCAGCACTGATAAACTCATAGTGATTACACCAGGTTGAGCTATTATATGTAATGACCAAAAGGGATAAATGTGCCTTTGTGGTACCCTCTTCCTCGACAACTGTGCCCCCCTCTGCCCCAGgttcactttcattttgttttggaaatcatGTGGCAATAACTTTATCATCTCTGCACCCAAATGTGTCTGTGTTCAATGAACTCTGTCAGTGTTCAATTGAAACCTTTTGTATTCAATTTTGTCTGGCAGAtttactgtgtgttatttaagcTTTTAAACCTTAATTTCATTAATAATGTTCTAAATTGAAGCTTGTTTGttgtaatattgtaatgatgaaaaaataaaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU150161 True 1673 lncRNA 0.38 1 26810884 26812556

Neighbor

gene id symbol gene type direction distance location
AMCG00018931 ap1b1 coding downstream 39595 26733267 ~ 26771289 (-)
AMCG00018928 rasl10a,LOC106584972 coding downstream 185336 26623824 ~ 26625548 (-)
AMCG00018926 NA coding downstream 400099 26367350 ~ 26410785 (-)
AMCG00018925 slc35e4 coding downstream 454276 26344630 ~ 26356608 (-)
AMCG00018920 NA coding downstream 1210221 25596536 ~ 25600663 (-)
AMCG00018933 gas2l1,LOC106580329 coding upstream 12706 26825262 ~ 26825957 (-)
AMCG00018932 NA coding upstream 32214 26844770 ~ 26869193 (-)
AMCG00018938 LOC107673410,LOC107730716,LOC107592308 coding upstream 60338 26872894 ~ 26943014 (-)
AMCG00018937 NA coding upstream 130508 26943064 ~ 27063981 (-)
AMCG00018940 NA coding upstream 404606 27217162 ~ 27224946 (-)
G119774 NA non-coding downstream 308964 26501001 ~ 26501920 (-)
G119770 NA non-coding downstream 349724 26460618 ~ 26461160 (-)
G119713 NA non-coding downstream 467806 26319977 ~ 26343078 (-)
G119691 NA non-coding downstream 659813 26119422 ~ 26151071 (-)
G119685 NA non-coding downstream 697731 26112864 ~ 26113153 (-)
G119826 NA non-coding upstream 558 26813114 ~ 26813426 (-)
G119891 NA non-coding upstream 409950 27222506 ~ 27278009 (-)
G119912 NA non-coding upstream 543269 27355825 ~ 27356032 (-)
G119929 NA non-coding upstream 652831 27465387 ~ 27468649 (-)
G119944 NA non-coding upstream 693952 27506508 ~ 27507199 (-)
AMCG00018930 NA other downstream 13164 26777635 ~ 26797720 (-)
AMCG00018929 NA other downstream 325569 26451724 ~ 26485315 (-)
G119545 NA other downstream 1623476 25186207 ~ 25187408 (-)
G119538 LOC108444117,LOC105014832,LOC106563153 other downstream 1639240 25134771 ~ 25171644 (-)
AMCG00018898 NA other downstream 1726298 25075398 ~ 25084586 (-)
G119827 NA other upstream 924 26813480 ~ 26814073 (-)
G119893 LOC101154678 other upstream 418317 27230873 ~ 27242574 (-)

Expression


Co-expression Network