G119893 (LOC101154678)


Basic Information

Item Value
gene id G119893
gene name LOC101154678
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 27230873 ~ 27242574 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU150237
GGAAATAGCTGAAGTCTCGCAGCTGAACAGAGATGGAGGAAGGGGTACCAGCCCTCCCAGTGAAGAATCTCACTGGCTCTGGGCCGGTTCATCCTGCTCTGGCAGGCATGACAGGCATCCTGATGTGTGCAGCCGGTCTGCCAGTGTGTCTGACTCGCGCCCCCAAGCCCATCCTGCACCCGCCACCTATCAACAAAAGCGACATGAGGCCTGTACCTGGGGTCAACGGCATCCGACGCAAAACCAAGAAGAAGCACCTGAAGAAAGgacctctcaagctccatcaggttggatggggagcgtcggtgcacagccattttcagatctctccagagatgttcaatcgggttcaagtctgggctctggctgggccactcaaggacattcacagagttgtcctgtagccactcctttgttaacttggctgtgtgcttagggtcgttgtcctgttggaaaataaaccttcgccccagtctgaggtccagagtgctctggagcaggttttcatcaaggatgtctctgtacattgctgcattcatctttccctcaatcctgactagtctcccagttcctgccactgaaaaacatccccacaggatgatgctgccaccaccatgcttcacagcagggatggtattggccaggtgatgagcggtgcctggtttcctccagacatgacacttgccattcaggccaaagagttcaatctttgtttctcatggtctgagagtccttcaggtgccttttggcaaactccaggcgggctgtcatgtgccttttactgaggagtggcttccgtctggccactctaccatacaggcctgattggtggagtgttgcagagatggttgttcttctggaaggttctcctctctccacagagacacgcaggagctctgtcagagtgaccattgggttcttggtcacctccctgactaaggcccttctcccccgatcgctcagtttggccgggcggccagctctaggaagagtcctggtcctgtgctcattgggaccttcaatgctgcagaaatcgTTCTGTACACTtcccccagatctgtgcctcgatacaatcctgtctcggaggtctacagacaattccttggacttcatggcttggtttgtgctctgacatgcactgttaactctgggaccttatatagacaggtgtgtgcctttccaaatcatgtctgaatcaactgaatttaccacaggtggactccaatcaagttgtagaaacatctcaaggatgatcagtggaaacaggatgcacctgagctcaattttgag

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU150237 True 1290 TUCP 0.52 4 27230873 27242574

Neighbor

gene id symbol gene type direction distance location
AMCG00018940 NA coding downstream 5927 27217162 ~ 27224946 (-)
AMCG00018937 NA coding downstream 166892 26943064 ~ 27063981 (-)
AMCG00018938 LOC107673410,LOC107730716,LOC107592308 coding downstream 287859 26872894 ~ 26943014 (-)
AMCG00018932 NA coding downstream 361680 26844770 ~ 26869193 (-)
AMCG00018933 gas2l1,LOC106580329 coding downstream 404916 26825262 ~ 26825957 (-)
AMCG00018947 LOC106585515 coding upstream 57016 27299590 ~ 27371370 (-)
AMCG00018948 rasal1,LOC106579924,LOC106585515 coding upstream 139429 27382003 ~ 27396226 (-)
AMCG00018946 NA coding upstream 310852 27553426 ~ 27567410 (-)
AMCG00018953 NA coding upstream 565568 27808142 ~ 27841558 (-)
AMCG00018952 NA coding upstream 620211 27862785 ~ 27878157 (-)
G119826 NA non-coding downstream 417447 26813114 ~ 26813426 (-)
G119825 NA non-coding downstream 418317 26810884 ~ 26812556 (-)
G119774 NA non-coding downstream 728953 26501001 ~ 26501920 (-)
G119770 NA non-coding downstream 769713 26460618 ~ 26461160 (-)
G119713 NA non-coding downstream 887795 26319977 ~ 26343078 (-)
G119912 NA non-coding upstream 113251 27355825 ~ 27356032 (-)
G119929 NA non-coding upstream 222813 27465387 ~ 27468649 (-)
G119944 NA non-coding upstream 263934 27506508 ~ 27507199 (-)
G119945 NA non-coding upstream 276038 27518612 ~ 27519715 (-)
G119956 sf3a1 non-coding upstream 328680 27571254 ~ 27572829 (-)
G119827 NA other downstream 416800 26813480 ~ 26814073 (-)
AMCG00018930 NA other downstream 433153 26777635 ~ 26797720 (-)
AMCG00018929 NA other downstream 745558 26451724 ~ 26485315 (-)
G119545 NA other downstream 2043465 25186207 ~ 25187408 (-)
G119538 LOC108444117,LOC105014832,LOC106563153 other downstream 2059229 25134771 ~ 25171644 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1784 NA non-coding NC_048565.1 CM023219.2 2114346 ~ 2117514 (-)