G119940


Basic Information

Item Value
gene id G119940
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 27518264 ~ 27519750 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU150285
CATCAATCTAGCAATTTAAAACCCTTTTCTACAGCGGTTTAAAACATTAGCTCCGTAAGGCCTGaggaaaaagttaaaatgtaattcaatttacTAATTAAGGCCTCAGGCCTCAGTACAAACCAGCAGACACGGTGGACCTCAAAGACTAGTTTTAAAGAACGCTGACATTGACAATTTCATTAGTTGCTGTTCTTTTGTTGCAACATTGACAATAACATTAACTTTCAGATATTTTCCAAACAGATATGAATCACATCTAATTAGTTTTTATGTTGCTTGCTATCCAAAAGGATAAGTGGCAAAAGCCACTTTGTCCTGAAAcagataagaaacaaaaaacagttgtGCCAGAGGTTTTCATTCTTGGCTCCTTGTATTACTGGCTGGGATAAAGCAAGGAAGAATTTAAAGGAATCTTTCTTTTCAGACCAAATCTCTATTGATTGGCATGCATTAGAGTGTTAGTGGCTATAAGTGATTGTACACTGTATAATGTGAGAGAAATGGAACGTATGCAAATGTATCTTgaaaaatacatggaaaaaatgGCTTTGAATGCTAGCTACTCCAAATATACTCttaagtatttattcatttccaaAGCTTTTGAAACCAAACTGGTTCAATTGTTCCTTTTTAAGTACCAATGACATATTTCTTTGTCTGTGCAATCCCCCAAATCACTGCAGATTTCCCCAATTTTTGTAGTATTAATGTTTCAAAAATGACTGTTCCAAATTCCtactaaatgtgtttatatgacCAGTGGCCTTAATAATGTTGTATACAGTTAAAATTCCCAATGCCTGTTTCAGTtgcattgtaattattataaggCTGTTATAaggaacattattttattttttagaattttccTTTCCGTGTCCTTTTTGGAACTTTTTCAGGAGAACCATAGATTTTTCGAATGCGTTCATAATTTTTCTGAGTTTGTTAGTAAGGGGTTCTGCATTTTAAGGTATATTACTTTCTCTTTCACAAAATACCGAgtatacatagacacacacgcacacacgcacacacgcacacacacacatctatgaaatatatacatgtatcatctataaattaaatacatattcaaaatcACCTGTTTGTGGCaataaaaggaatacaaaaaagtgCAAGTTTGATAATGTATCTTTGTGCAGGATCACCCCTTAAAGTTCAGCAGTTTCATGGCTGTACGATTCAGAATACTATTGACTGTATCTTGATTTCTGCCAGACTTGTTGCCATATAAAACTGCTGTCAGATTCATCTGTCATCTTTGCTCGCTTTTTCTATTGTCTCTGTCACTGAGCACTATTCACTCCTGACCTGGGATGAATGTATGTACGGAACCTGTACATGGGTTAGCTTTTTTCTTGtcaatgttgtatttatttaataagggACTGTGATATTTAGTCAATAAATGGTTTGAAGAAGCactgaatgttttctttaattgtttttcattctgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU150285 True 1487 lncRNA 0.34 1 27518264 27519750

Neighbor

gene id symbol gene type direction distance location
AMCG00018944 slc7a4 coding upstream 4333 27500360 ~ 27513931 (+)
AMCG00018943 dgcr6,LOC101064501,LOC108430318 coding upstream 36243 27475501 ~ 27482021 (+)
AMCG00018941 dtx1 coding upstream 245001 27259930 ~ 27273263 (+)
AMCG00018942 NA coding upstream 315614 27201952 ~ 27202650 (+)
AMCG00018939 dtx1 coding upstream 442831 27073796 ~ 27075433 (+)
AMCG00018945 sf3a1 coding downstream 48690 27568440 ~ 27580251 (+)
AMCG00018949 NA coding downstream 106087 27625837 ~ 27662982 (+)
AMCG00018950 LOC107092734,LOC103375490,LOC103470605,LOC106921081 coding downstream 221277 27741027 ~ 27742100 (+)
AMCG00018951 NA coding downstream 261877 27781627 ~ 27791861 (+)
AMCG00018957 NA coding downstream 705028 28224778 ~ 28235729 (+)
G119941 NA non-coding upstream 2718 27514319 ~ 27515546 (+)
G119897 NA non-coding upstream 236692 27281006 ~ 27281572 (+)
G119836 NA non-coding upstream 662822 26849626 ~ 26855442 (+)
G119834 NA non-coding upstream 668766 26844689 ~ 26849498 (+)
G119820 gas2l1,LOC106580329 non-coding upstream 691672 26825215 ~ 26826592 (+)
G119963 NA non-coding downstream 150883 27670633 ~ 27670834 (+)
G120029 NA non-coding downstream 395092 27914842 ~ 27915123 (+)
G120039 NA non-coding downstream 429647 27949397 ~ 27951723 (+)
G120078 NA non-coding downstream 672174 28191924 ~ 28202170 (+)
G120112 NA non-coding downstream 783297 28303047 ~ 28304416 (+)
G119762 NA other upstream 1057037 26460620 ~ 26461227 (+)
AMCG00018922 med13l other upstream 1799838 25678677 ~ 25718426 (+)
AMCG00018913 NA other upstream 2032818 25466091 ~ 25485446 (+)
G119507 NA other upstream 2250483 25234082 ~ 25267781 (+)
AMCG00018820 NA other upstream 5620564 21848370 ~ 21897700 (+)

Expression


Co-expression Network