G119941


Basic Information

Item Value
gene id G119941
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 27514319 ~ 27515546 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU150286
GCTGGACATCATTGCCAGTTGACAGAATGGAGGGCTGGGGTTAAGCATTCATGTAGTGGATCTGACTTTTCTGTTAAGTTTTCTCCACCAAACTGTGATGTATCATGTGATTGAGCTCCCCCTAGCCACCTCTTCACATTCTTCCCACCAGCATTCTGCACACTGATCTATTAAGGATGGTCAGGAAATTGGTTGTCCGCAGAggctgtttttcattgtttacgTACCAATCTAATTGAAGTTCTGATAGAATTCCACTACTTACGGATATATCTTTTCCCAAAAATGTAGGACACTTTGGATAACGTCATTATCAAAATTTGTTTTCGTAAACATGTTTACATGACAGAAAAGGTAGATATTTTTGAATACTGTTAACAGGGGGGTCCCTCTATTTAGACATATTTAGTTATTGACAGTTAAtgcttttacatttacacttttcCGTTCCACTCTTAATTGCATTGTTGAACCAGTTATCTTCAGCTACTAATTGAGGACCTCTTATTGTCCCTCAGTCTGCTGAAATTATACCTGTAAATGTATCTGAACATTATAGAAAACTGACTGGAGCTAAGCACACAAACCTGGCAACCAAGTCTCCTATGCTGCTCAGTGGGCTGAGTTAGTTAATACTGAAAGGGAATAGCACTTTTGACTCACAATACTGTATCTGCGATCTAttctattttacaaaaatatattatatatatatatagatatatatattttaaaataatgtatatatttatgtatactaGGTCATTACactgtgttgcttttatttatttattctatctataaatcaaataattttaaactgtACCACCAAAAGTATTGGGGTGATTACCTAAGACCAAAAGACAAAGATCAGATGCTGAAAGATGGTCAGAGTAATATTTAACCGTTCATAGTGCAGCAACAGAATAAGTTGGTCTTTGTGGTCTCTCCCTAATTCATGGTTCCAGTACAATCACAGTGGTGCACTATGGGATTGAGCAAGGGCCTCTGGTCAGTCCATGAAATGTGCTCAAAGTTGAACACTGCTTTGGATGTACAACTTTAATATGGATTCTGACATCGCAAAAGATCATACAGttacagacaaaaaaatgtaaacatcgcACTTGAGCCCTGGTACAATCCATTACTGGTGGAGGAGGCTTGTcccatttctttcatttatatGGTGAGAAACCACATATATGCCTTTgatttgacatgtttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU150286 True 1228 lncRNA 0.36 1 27514319 27515546

Neighbor

gene id symbol gene type direction distance location
AMCG00018944 slc7a4 coding upstream 388 27500360 ~ 27513931 (+)
AMCG00018943 dgcr6,LOC101064501,LOC108430318 coding upstream 32298 27475501 ~ 27482021 (+)
AMCG00018941 dtx1 coding upstream 241056 27259930 ~ 27273263 (+)
AMCG00018942 NA coding upstream 311669 27201952 ~ 27202650 (+)
AMCG00018939 dtx1 coding upstream 438886 27073796 ~ 27075433 (+)
AMCG00018945 sf3a1 coding downstream 52894 27568440 ~ 27580251 (+)
AMCG00018949 NA coding downstream 110291 27625837 ~ 27662982 (+)
AMCG00018950 LOC107092734,LOC103375490,LOC103470605,LOC106921081 coding downstream 225481 27741027 ~ 27742100 (+)
AMCG00018951 NA coding downstream 266081 27781627 ~ 27791861 (+)
AMCG00018957 NA coding downstream 709232 28224778 ~ 28235729 (+)
G119897 NA non-coding upstream 232747 27281006 ~ 27281572 (+)
G119836 NA non-coding upstream 658877 26849626 ~ 26855442 (+)
G119834 NA non-coding upstream 664821 26844689 ~ 26849498 (+)
G119820 gas2l1,LOC106580329 non-coding upstream 687727 26825215 ~ 26826592 (+)
G119817 NA non-coding upstream 735659 26777653 ~ 26778660 (+)
G119940 NA non-coding downstream 2718 27518264 ~ 27519750 (+)
G119963 NA non-coding downstream 155087 27670633 ~ 27670834 (+)
G120029 NA non-coding downstream 399296 27914842 ~ 27915123 (+)
G120039 NA non-coding downstream 433851 27949397 ~ 27951723 (+)
G120078 NA non-coding downstream 676378 28191924 ~ 28202170 (+)
G119762 NA other upstream 1053092 26460620 ~ 26461227 (+)
AMCG00018922 med13l other upstream 1795893 25678677 ~ 25718426 (+)
AMCG00018913 NA other upstream 2028873 25466091 ~ 25485446 (+)
G119507 NA other upstream 2246538 25234082 ~ 25267781 (+)
AMCG00018820 NA other upstream 5616619 21848370 ~ 21897700 (+)

Expression


Co-expression Network