G119945


Basic Information

Item Value
gene id G119945
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 27518612 ~ 27519715 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU150290
CTTCTTCAAACCATTTATTGACTAAATATCACAGTcccttattaaataaatacaacattgaCAAGAAAAAAGCTAACCCATGTACAGGTTCCGTACATACATTCATCCCAGGTCAGGAGTGAATAGTGCTCAGTGACAGAGACAATAGAAAAAGCGAGCAAAGATGACAGATGAATCTGACAGCAGTTTTATATGGCAACAAGTCTGGCAGAAATCAAGATACAGTCAATAGTATTCTGAATCGTACAGCCATGAAACTGCTGAACTTTAAGGGGTGATCCTGCACAAAGATACATTATCAAACTTGcacttttttgtattccttttattGCCACAAACAGGTgattttgaatatgtatttaatttatagatgatacatgtatatatttcatagatgtgtgtgtgtgcgtgtgtgcgtgtgtgcgtgtgtgtctatgtatacTCGGTATTTTGTGAAAGAGAAAGTAATATACCTTAAAATGCAGAACCCCTTACTAACAAACTCAGAAAAATTATGAACGCATTCGAAAAATCTATGGTTCTCCTGAAAAAGTTCCAAAAAGGACACGGAAAggaaaattctaaaaaataaaataatgttcctTATAACAGccttataataattacaatgcaACTGAAACAGGCATTGGGAATTTTAACTGTATACAACATTATTAAGGCCACTGgtcatataaacacatttagtaGGAATTTGGAACAGTCATTTTTGAAACATTAATACTACAAAAATTGGGGAAATCTGCAGTGATTTGGGGGATTGCACAGACAAAGAAATATGTCATTGGTACTTAAAAAGGAACAATTGAACCAGTTTGGTTTCAAAAGCTttggaaatgaataaatacttaaGAGTATATTTGGAGTAGCTAGCATTCAAAGCcattttttccatgtatttttcAAGATACATTTGCATACGTTCCATTTCTCTCACATTATACAGTGTACAATCACTTATAGCCACTAACACTCTAATGCATGCCAATCAATAGAGATTTGGTCTGAAAAGAAAGATTCCTTTAAATTCTTCCTTGCTTTATCCCAGCCAGTAATACAAGGAGCCAAGAATGAAAACCTCTGGCa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU150290 True 1104 lncRNA 0.34 1 27518612 27519715

Neighbor

gene id symbol gene type direction distance location
AMCG00018948 rasal1,LOC106579924,LOC106585515 coding downstream 122386 27382003 ~ 27396226 (-)
AMCG00018947 LOC106585515 coding downstream 147242 27299590 ~ 27371370 (-)
AMCG00018940 NA coding downstream 293666 27217162 ~ 27224946 (-)
AMCG00018937 NA coding downstream 454631 26943064 ~ 27063981 (-)
AMCG00018938 LOC107673410,LOC107730716,LOC107592308 coding downstream 575598 26872894 ~ 26943014 (-)
AMCG00018946 NA coding upstream 33711 27553426 ~ 27567410 (-)
AMCG00018953 NA coding upstream 288427 27808142 ~ 27841558 (-)
AMCG00018952 NA coding upstream 343070 27862785 ~ 27878157 (-)
AMCG00018955 NA coding upstream 429997 27949712 ~ 27963857 (-)
AMCG00018954 NA coding upstream 455277 27974992 ~ 27984938 (-)
G119944 NA non-coding downstream 11413 27506508 ~ 27507199 (-)
G119929 NA non-coding downstream 49963 27465387 ~ 27468649 (-)
G119912 NA non-coding downstream 162580 27355825 ~ 27356032 (-)
G119891 NA non-coding downstream 240603 27222506 ~ 27278009 (-)
G119826 NA non-coding downstream 705186 26813114 ~ 26813426 (-)
G119956 sf3a1 non-coding upstream 51539 27571254 ~ 27572829 (-)
G119981 NA non-coding upstream 154131 27673846 ~ 27674566 (-)
G119986 NA non-coding upstream 213348 27733063 ~ 27733373 (-)
G119988 LOC107092734,LOC103375490,LOC103470605,LOC103146723,LOC101486660 non-coding upstream 221217 27740932 ~ 27743035 (-)
G119995 NA non-coding upstream 249840 27769555 ~ 27769799 (-)
G119893 LOC101154678 other downstream 276038 27230873 ~ 27242574 (-)
G119827 NA other downstream 704539 26813480 ~ 26814073 (-)
AMCG00018930 NA other downstream 720892 26777635 ~ 26797720 (-)
AMCG00018929 NA other downstream 1033297 26451724 ~ 26485315 (-)
G119545 NA other downstream 2331204 25186207 ~ 25187408 (-)

Expression


Co-expression Network