G119956 (sf3a1)


Basic Information

Item Value
gene id G119956
gene name sf3a1
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 27571254 ~ 27572829 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU150307
CGTAGTCCTTGCGGATGATGACCTggtcgggggtggggggcagtggTGGGGGCATGGGATTGTCTGGTGGTGGTGGGGCTTTCATATCGTCGTCATCATCTGAACCCTCGTCCATGTCCTGCAGCTGTGTGTCCTGGTCTGGCTGGGCTGGAGGACCATCATTTCTATCCTCCGTGTCACCCTCCTCATCCTCAGACTCCACCTCCATCTCCACTTCCTCACTCTCCCCAAACTTCTCGTAGCGTTCCTGGATCAAGATCCGCGCCCCCAGCTCCTCTGGCGTGGTAGGAGGGGGGAAGTGACCTTGCTCATTTGGCTGGAAGTCCACAGTTTCCACCACCACAAAATCATGCCAGTCGATCTGTGCGTAGGCCACTCGCTCCTTCTCCcg

Function

symbol description
sf3a1 Predicted to enable RNA binding activity. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of U2 snRNP; U2-type prespliceosome; and catalytic step 2 spliceosome. Orthologous to human SF3A1 (splicing factor 3a subunit 1).

NR:

description
PREDICTED: splicing factor 3A subunit 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU150307 True 391 lncRNA 0.59 3 27571254 27572829

Neighbor

gene id symbol gene type direction distance location
AMCG00018946 NA coding downstream 3844 27553426 ~ 27567410 (-)
AMCG00018948 rasal1,LOC106579924,LOC106585515 coding downstream 175028 27382003 ~ 27396226 (-)
AMCG00018947 LOC106585515 coding downstream 199884 27299590 ~ 27371370 (-)
AMCG00018940 NA coding downstream 346308 27217162 ~ 27224946 (-)
AMCG00018937 NA coding downstream 507273 26943064 ~ 27063981 (-)
AMCG00018953 NA coding upstream 235313 27808142 ~ 27841558 (-)
AMCG00018952 NA coding upstream 289956 27862785 ~ 27878157 (-)
AMCG00018955 NA coding upstream 376883 27949712 ~ 27963857 (-)
AMCG00018954 NA coding upstream 402163 27974992 ~ 27984938 (-)
AMCG00018956 lhx5 coding upstream 425326 27998155 ~ 28007014 (-)
G119945 NA non-coding downstream 51539 27518612 ~ 27519715 (-)
G119944 NA non-coding downstream 64055 27506508 ~ 27507199 (-)
G119929 NA non-coding downstream 102605 27465387 ~ 27468649 (-)
G119912 NA non-coding downstream 215222 27355825 ~ 27356032 (-)
G119891 NA non-coding downstream 293245 27222506 ~ 27278009 (-)
G119981 NA non-coding upstream 101017 27673846 ~ 27674566 (-)
G119986 NA non-coding upstream 160234 27733063 ~ 27733373 (-)
G119988 LOC107092734,LOC103375490,LOC103470605,LOC103146723,LOC101486660 non-coding upstream 168103 27740932 ~ 27743035 (-)
G119995 NA non-coding upstream 196726 27769555 ~ 27769799 (-)
G120026 NA non-coding upstream 326493 27899322 ~ 27899556 (-)
G119893 LOC101154678 other downstream 328680 27230873 ~ 27242574 (-)
G119827 NA other downstream 757181 26813480 ~ 26814073 (-)
AMCG00018930 NA other downstream 773534 26777635 ~ 26797720 (-)
AMCG00018929 NA other downstream 1085939 26451724 ~ 26485315 (-)
G119545 NA other downstream 2383846 25186207 ~ 25187408 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000146_02212292_02219413 SF3A1 coding CI01000146 null 2212112 ~ 2219413 (-)