AMCG00018999


Basic Information

Item Value
gene id AMCG00018999
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 549516 ~ 556904 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018999
ctgAGTAAGTGAGTAACAGTCattctgtctccctctgtgtctctgcagggtCTTCAGCCCCCCGAGGACAGCCCAGAGATAGAGGGACTACTCGTACGCAGAGACAGATGGACGGACGCACTGCAGATGGACAGTGTGTGGATCTGGGGTGCTGACATGGGGAGACTGCGATCCCCACTCCCACCCTTCCCCCTCCCTAAGTGACACTACCTCTCCCTCACACTCCACCCGAGTCTCCACACTTGCCTGGTACACTTGCCCGGCTTGGACCtcccactccactccactccactccactgaGGAGGGCAGTGTGTCACGCTTCCCTGCGGCCACTGCCTGCTCTCTGTCCCCACTGCGCCGCCCTGCTGGATTACACGCTCACCCTGCTGTGATTACACGCTCACCCTGCTGTGGATATTTCCTCTGCCTGACAGCAGCCCCTGGGGGTCCAGCACAGACTGCTACTGAGGGTGGGAGCTTGACGGCTGCCCTGCTGGATATATAacctttaattaattttgaattattttaatacaattattttatctaACAACATTGCGCTGATTTCATTCTGCCCTCGTCGCTGGTCCCTGGTAGGCAGTAGAATGTGGCGCCCACTGCTGAGCGGGGGGATCGCGGGGGTGGAGTGAGAGGGGCAGGGTGGACACAGAACCGACGGGCGCGaaggagacggggagagagagggctAGCGATGGTGGAGCACGGGGAGCTGCTGGCCGAGATGGTGTCCGTGGGCAGGATGTCCACCACGGAGCGGCTCCGACATGCGCAGAAGCGCCGCGCGCAGCAGCTCAAGGGCTGGGCACAGATAGAGAAGGAGGGGCCCCGGGGCCCACGGACCGCCAAGGGGGCCAAGGGGGCCAAGGGGGGGCGCAGGGTTGTGTTCCCCGACAACGTCATGCTGCTGGAGGCCGCGGCACGCAACGACCCAGAGGAGGTGACGGAGCTCCTAAAAAGTGGTGTGAGTCCAGACCTGTTCAATGAAGATGGTCTGACAGCTCTGCACCAGtgctgtataGATGACTTTGAGGAGGTGGTGCGGGCCCTGCTGGCTGCGGGTGCGAGAGTGAACGCCTGTGACAGTGAGCTGTGGACACCGCTGCATGCCGCTGCCACCTGTGGACACACCAGCTTGGTGGAGCTGCTCGTCCAGCAtggtGCAGATCTGCTGGCGGTGAACGCAGACGGGAACATGCCCTATGACCTCTGTGAGGACGAGGTCACGCTGGAGTTCATTGAAACCGCCATGGCCGAGCAGGGCATCACTCAGGAGCGCATTGACGAGTGCCGCGGAGCGAAGGAGCAGGAGATGCTGTCGGACATCCGGGCTCTGATCCAGAGCGGTGCGGACCTCAATGCACAGGACGACAACGGAACCACGCTGctgcaCATCACGGCTGCGAACGGGTACCAGAGAGCAgcagagctgctgctggagaGCAGGGTGCGGCTGGAGGAGAGGGACAGCGATGGCTGGGCGCCGTTGCACGCCGCCTCCTGCTGGGGACAGATGCAGATGGTGGAGCTGCTGGTGGCCAATGGAGCCAGTCTGAATGCCAGGTCCCTGCTGGATGAGACACCgctggACGTGTGTGCGGATGATGAGGTCAGAGCCAAGCTGCTGGACCTGAAGCACAAACACGACGCCATCATGAAGAGCCAGGACAGACACAAGAGCAGCCTGCAGAGACGGGCCTCCAGCACGGGCAGCCgaggGAAGGTGGTGCGGCGGGTCAGTGTGAACGAGCGCTCCAGCCTGTACCGCCGGGAGCACCAGAAGGAGGCGATGGTGTGGCAGGAGCGCGGCCGGCAGCCCGAGCAGGATGACGACgaggacagacagacggacgcAGAGCTGCGCCAGCACACCGCCCCGgCTGCCGTGTCCGAGCCCGATGGGCCGGCTGTGGGGTCGGAGGTGAAGGGGGTCTCCGGCCTGGGCAACGGAGCCACGCCCCTCCCCCCCAGTGGAGCCCCGTCCGCGCTGGTGCCGGGGGAGGGCCGGGGTGGGGGGCGTCTGGACCGCAGCGCCTCGTACCAGCTGGCCACGGCGCAGGAGGAGCCGGCGGTGCCAGGTGCGGGCGAGGGCATGAGCCGGGAGAAGTCGCACCAGACGCTGGCCGACCTGAAGCGCCAGCGTGCCGCAGCCAAGCTCCACAAGCAGCCGGCGCCGCCCCCCCCCGCCCTGGCGCTGCCCCCTCCCGCCGCCGAGGAGCCCTCCCCGCCGAGCCCCGCCCACTCGGCCCCCCCGCCGGCTGGTCCCAGCGCCGTCTCGCTGCGGCCCAGCGCCAGCGGAGGCGCGTCTCAGCAGTGCCCTATGCggacggagagagagacggagtcCCCTGTGGCGGGCGATGGAGGGGGTTTGATGAAGGGTGTGTGTAGTGATGCGCTGCACTGA
>TU38342
ACCCCAGCCAGCGGAGACCCCCCACTGCTGAAGCTGCGAGCCCCTGAGGAGGAGAGCCCCTCCGAGAAGCAGCCCTGCTGTGGACTGATGTAGCCCTCCCACACAGTCGAAtacccacacgcacacacacacacacactcgcgcacacgcactctcacacacatacagtccTTAGTGCTGCCCCTGCTGTTGACGCCAAGACCAGACAGTCCAGTTCTCGGTGCTGTGGTGCATCAAGGTTGACAGGACAGAGCCGCACAGCATGCTGGGAAATCTTACTATAGCCCGAACATCCATACAATGATTCTGTCTCTGCTGCTCGatcgccctctctctctctctctctctctcgctcccctcGTCCGGGGTGTGTTAGGGAGCAGgttgtgtgtgctgtggttTGTCGGCTGTGTGGGGCTGTGGTCTCAGGTCTCGCTGCGGCCCAGCGCCAGCGGAGGCGCGTCTCAGCAGTGCCCTATGCggacggagagagagacggagtcCCCTGTGGCGGGCGATGGAGGGGGTTTGATGAAGGGTGTGTGTAGTGATGCGCTGCACTGATGTGGCGATTATTACCGATTACTGTCGCTGCGATGACGATTGTGATTGGCCTGAACCAATTTCGCTCAATTCCATTTCGATTTGTAATCTTCAGGTTTGATTAGTTGCCCTTTTTCATTTGTcctactgtttgtttgttggtttgttctCTTAAGCActgctttgattttgattttgtactaCCTGACGATTGGGTCGTCTCAGAGATGATGGCTGAGACCAGGCCTGAATGAAACGGACCCGGCGCCGCAGTCTGTTCAAATAGAGGAGCCGCAGGGTGGGGTGGGTCCGGTCCTCGAGTGCTCCAACGGGTTTTCCAGGCGTTTCAATCGGCCACCGATTGATCGCCTGAAGACCCTGGACCCAGGAGCCCTGAGGGCCCGACCTGCCCACTCTGGCCAATGCCAGATGCATACGGGCATTGCTGTGGAGACAGGCATgcgggttttatttattttttattataatattgtcattgtattttaaactgtggACGAGTCGAGCTGACTGGAGCTCATGTGACGATGGCAGTTAAAAAGAGAAGGGTAGTGTGGTGAAGTTGTATCTTTCGTACGTGACATGCCGAGGGAATGGATGGGGGAAGCGGTGACACCCTGTTCACCCGGTGTGACCCGGTGCCACACGACACCCTGTTCACCCGTTGTGACCCGGCGCCACGCCACTCCCCGTGCATCCGGTGTGACCCGGCACCACACCAAGCTCCGTGCACCCGGTGTGACCCAGCGCCACGCCACTCCTCGTGCACCGGGTCGGAGGCATGTGAAGGGGATGTCTGGGCAGACACGGCTGTTGGGAGAGGAACAGGGAGCTCGTACATGCAACACGCGGCACAGAAAGGTGGGAGGAGGACTTCACCTCCGCCCCCCCCAGCCGAGGAACCGTGACCGAGACACTGTAAACGGATCGGTACCAACGACCGGCCCGGAGATACCAGCCTTGCCCAGAGCACTGCTGAcatagtattttttatattcatacagatgcacagagagagagagagagggctgtaGATATTGATATGAATGGGTGTGTTTgagaattatattttattaagatggGGTGTGATTTTTATGAAATGCTGCAATGACAAATTATGGTCTATTTTTTCAGAACCACCCCAGGTCCCAGAGTCCTGGAGAAACGCGTTCCCCTCATCTGTACTGTAATGCTGGCCTCTGTAGGTCGTGTGTAGGGGTTTGTTCCTCAGAGGCTGCGATCCACAGGTGCCGACTCCTTTGATTGTACATTTGTCGCAAAAGCAATCCAAAAAATACGGCGGCCCTGAAGGGACGAAATCCCTTCTGCAGAATCACAAGGAagtgtgtgtctttgtatttCCCCCAAAGTGTCTTTAGGGCTTGtgtttaaaatggttaaattgGGACCAAAAATTGTACAGGTTTAGGTTTGCAAATTGTCCCAACAAAGTATCATGAGACGCTGaatgttttgtagtttttattgtCTTAGCCCCCCCAATCTGGGACAACGGGGGGGGTGATGGGAGAGGCAGCGCTGTGATTTACACTACA

Function

GO: NA

KEGG:

id description
K17458 PPP1R16A, MYPT3; protein phosphatase 1 regulatory subunit 16A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018999 True 2425 mRNA 0.65 11 549516 555351
TU38342 False 2117 TUCP 0.53 2 554766 556904

Neighbor

gene id symbol gene type direction distance location
AMCG00019000 NA coding upstream 35085 506635 ~ 514431 (+)
AMCG00018998 exosc4,exos4 coding upstream 46085 498649 ~ 503431 (+)
AMCG00018989 NA coding upstream 76258 460159 ~ 473258 (+)
AMCG00018990 NA coding upstream 134644 411483 ~ 414872 (+)
AMCG00018984 NA coding upstream 290225 255473 ~ 259291 (+)
AMCG00018997 NA coding downstream 2431 559335 ~ 560597 (+)
AMCG00019004 gpt,LOC103482433 coding downstream 19053 575957 ~ 586263 (+)
AMCG00019005 NA coding downstream 40924 597828 ~ 599198 (+)
AMCG00019008 NA coding downstream 51871 608775 ~ 623347 (+)
AMCG00019009 NA coding downstream 144420 701324 ~ 702246 (+)
G30619 NA non-coding upstream 52996 443168 ~ 496520 (+)
G30583 NA non-coding upstream 177718 370446 ~ 371798 (+)
G30549 NA non-coding upstream 267372 227976 ~ 282144 (+)
G30699 NA non-coding downstream 452357 1009261 ~ 1026744 (+)
G30700 NA non-coding downstream 456107 1013011 ~ 1053885 (+)
G30723 NA non-coding downstream 581601 1138505 ~ 1139858 (+)
G30857 NA non-coding downstream 629493 1186397 ~ 1187225 (+)
G30866 NA non-coding downstream 639028 1195932 ~ 1196202 (+)
G30589 NA other upstream 150844 395501 ~ 398672 (+)
G30527 NA other upstream 475285 73792 ~ 74231 (+)
AMCG00019012 NA other downstream 182322 739226 ~ 744083 (+)
G30698 NA other downstream 438423 995327 ~ 1001213 (+)
AMCG00019029 NA other downstream 641082 1197986 ~ 1199095 (+)
AMCG00019030 NA other downstream 656772 1213676 ~ 1237637 (+)
G30877 arhgap39,LOC106560380,LOC106584197 other downstream 696462 1253366 ~ 1253735 (+)

Expression


Co-expression Network