AMCG00019002 (foxh1,LOC108431400,LOC106590409)


Basic Information

Item Value
gene id AMCG00019002
gene name foxh1,LOC108431400,LOC106590409
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 525755 ~ 534393 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019002
ATGACACGCCCCACGTCACGGCAGCCCTGCCCCAATGGGGAACAGGTGGCCGGGGTCACGGTCAGCCCCTGGGGGCCGGGGGACCCCTCTCTGCCACAGGGCATCAGCATGACAAAGCACTGGGAGGGCAGCAGTCTGCAGGGGCCGCCCGCCCTCGCCTACCTGCACTCTCCGCGCTCTGACCTTCACCTTGACTGGGTCCCGGTGACCGACCCGCAGCGCAGCCCGGAATACCTGCTGGCCAGCGTGTCCTTGTTGTCCCCAGCTCCACAGTGGAGCTTCTTCTTCAGCCCCAGGCCGGTCGAGCCCCGGGGAGAGAAGACGACCGAGGCGGCGGCGGCCCTCACCCCGGCCAGGGCGCCCATGGACAAGTCGGGACCCCTGGAGCCCAGTGGCATCAGTGCCCTGCCCTTCCCGATCCTGAAGGAGATCAGCACGCTGTTCCCGTTCTTCAAGGGCAACTATAAGGGCTGGCGGGACTCTGTGCGCCACAACCTCTCGTCCTATGACTGCTTCGTCAAGgtGCTCAAGGACCCGGGGAAGCCGCAGGGCAAGGGCAACTTTTGGGCGGTGGACGTGGGCCGCGTGCCGCTGGACCTGCTGAAGCGCCAGAACACGGCCGTGTCCCGCCAGGAGGAGGCGCTGTTTGCCCATGACCTGGCGCCCTATATCCTGCAGGGCGCCCCCCCTGCTGGCCCCGTGCCCCCCCCCGCTGTGGTACCCCCTCCACCGCCTCCCCCCGGGGAGCTGTACCGGCCCCGGTTGGACTCACCCTTTGCCATTGACGCCCTGCTGCACAGCCTGCACCCCGCCAGTGCCGCGGGGGAGCCTGGGCCGCCTGGAGGGGGCTGGGAGCCGTGTGCCGTGGCGACTGGGAGGGCCCCCCCCGCGGCGCCGCCCCCCCCCCGGCCGCGTTACTCCTCCTCCGCCCACAGCACCTCAGCCAGCTCCACCAGCCCaccctcctcctcgtcctcagAGGACGACTGCCGGGGGGCCCGTCCTGGGAAGCGCCAACTGGAGGGGGGGGAGGCCAGCTCGGACTctgaggaggggggtgggggggggtatgAGGATGGCAGGCCCCTCCACAAGTCACGCAGGCCCCCCCCCGCGCCCTGGGAGCTGCCCACCTCCTACACCAAGTTCGCCCCCCCCAATGCCGTGGCCCCTCCCAGCATGTGTTTCAGCGGGGGGGGCTCCTTCCTGCCGCTGGGGGGGCTGCCCTTCTATAGCTTCCGTGGTCCCCCCGCCgggccccccccgccccactcTGGCCCCCCGGCCTTCTTCAGCCCTGCCTACTGGCCCCTGCTGCCCCGGGGGGGGGTGTCCCTGCAGCCGTCGCCACTCCTCGTGGACCTGGACTCCCTACTGCAGTCTGTGCCCCCCAACAAGAGCGTGTTCGACGCCATGGGCCACCCTGAGCAGCCCCCCGCCCATGCACAGCTGCCCCACCTCGCCCACTACTCGCCCTACTAAGCCCCCATTCCCGGGCCCCCAGCCCCCGTCTGTGTGTAAATATCCTGTCTGTCTGACCTGATCAGGGCGTCTCCACTGGGGGACACAATCGACGAGCCAAAGACTGTTGCACTGACTCGGACCAAACAGTCATCTGcactattttattattgctcTTGATCTGCattatttgttgttgctttgtttctattccagtctgtgtgtgttgtgtgggacTGGCAGACTCCTGGATGAAATGAATTTGCATCCCCAGGACGTCCTTGCTGGTCCCGGCCCGCTCTGGGCTTTACTGTTTTATAGAGAACATTTTAAGCCTGTTTTAGAGACTTTCtatgggggggggagggagtaTATACAACTTGTGCAAGTCTGATGGGCAGAGCTCGAGTTGCTGCTTGTGTTGCATTGTCTCGGCTGGGCTGTGACTGGGATCAAGTGGGAGGTTGTAGGAGTGTGAGTGACGTGTGAATGGGTGTGGGAGCATTTGAGTGGATGTGTTGGTGGCCTCGGGGCCTGGGACCACCCTGGGGTCTCTGCAGTGGCCTCGAGTCTCTGCACTGGGAGAACGGGGTGATGGAGACGGGGAGTTTACAGGAGGGAGTGATGGGTGGGGGGCAGGTTGGGTGTCTGTGCCAGTGCAGCCCCTAGTCTGCTGTGATTAATCAGCAGTCTGAATAACAGTGTGTACCTGCAGTGCATCAGCACAGGTGGTAGCTGGTTGTGCGTCAGTGTCCGTACAGAGAGTGCagccaggtgtgtgtgtgtccctggcTGACTACTCGACTCCTGGGCCCCATATTCTCTACCTGCTCTCTCTGTTGTCCAGCACTGGGCTGCAGTCTTGGTGACCCCAACTGCTGTCCCCCTCCATGGCCCCAGCAGTGAGCCTGGTCAGCCAGCCACGGCCTCGCTGTGGGACCTACCCCCCCATCTTCCAACGAGTGAGGTAAACGTGTTCTGGTCCCTTTCGCCGCACAGACCCAATCCCCGGGGTCGGCTTCCTGGCGCCTGTCGATGTCCCTGTGGCACTCGTTAAGTCAATGGCCTGGTGGTGTTCATGGTTTCAGATCCCGTTCTACAGGTTTGTTCAGGTTGTCTTCAGGACACCCCAGTCCAGTTAGACTGTCTAAATATAAATCAGTGACCACAGGGGGGCAGGCTAGTGCTGTGTGAGGGTACTGGTGGCTCTGACCCAGAATGGGTTGAAAGAAATCCTCCAGAGCTGTAATATCCTGGCCATCTGCATCCAGAGCTATCCAGGAAAAATGTACTTGTTATGTTTAGTCCTAGATATATATCCTTTTATTTCAATCTCTAATTGTTTTATACTTCCTGGTGTGATGTGAGTGACAGGGAGGGGAGAAGGTGGTTGAgtcggggagggagagagagctggagtGGGAGTGTGATTGGCaggtgtgggggtgtgggggtgggggtgggggtggggggccggTCAGTGGGATATTATCGAGTGATTGTACTGTGACACTGCAGTGACCAGGGAGGCTGACCCCTTCTCCCCAGTCGGGGGAGAGATGGGGTGACCCACTGCCaccaaatgtttgttttgtcttaaatCTCTCCTgtatttaaaatttatttttcacctcTTGGAGAAGGTCTGAGATCTCGGGGATCTTCAAGGATTTGGGCCAGAatgtgcaatttgttttataaattcttcatttttttttaagatgtccataaacctgtgctgctgaaaaACTTGAAAGCTGTGTGCCTTTTAAAccagaactgtatttttgataataaaaaagacacaaaacagca

Function

symbol description
foxh1 Enables DNA-binding transcription repressor activity, RNA polymerase II-specific; RNA polymerase II transcription regulatory region sequence-specific DNA binding activity; and SMAD binding activity. Acts upstream of or within several processes, including embryonic morphogenesis; nervous system development; and regionalization. Located in chromatin. Is expressed in several structures, including nervous system; oocyte; pericardial region; presumptive diencephalon; and ventral mesoderm. Orthologous to human FOXH1 (forkhead box H1).

NR:

description
PREDICTED: forkhead box protein H1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019002 True 3276 mRNA 0.60 4 525755 534393

Neighbor

gene id symbol gene type direction distance location
AMCG00019001 gpaa1 coding downstream 6908 514803 ~ 518847 (-)
AMCG00019003 maf1 coding downstream 28918 478027 ~ 496837 (-)
AMCG00018994 NA coding downstream 107489 416156 ~ 418266 (-)
AMCG00018993 NA coding downstream 113998 405369 ~ 411757 (-)
AMCG00018995 NA coding downstream 134941 382423 ~ 390814 (-)
AMCG00019006 NA coding upstream 60382 594775 ~ 609647 (-)
AMCG00019010 NA coding upstream 134990 669383 ~ 670387 (-)
AMCG00019015 NA coding upstream 178477 712870 ~ 723666 (-)
AMCG00019014 NA coding upstream 193672 728065 ~ 737692 (-)
AMCG00019018 rhpn1,LOC106584065 coding upstream 450152 984545 ~ 992405 (-)
G30760 NA non-coding downstream 1759 522119 ~ 523996 (-)
G30612 NA non-coding downstream 111473 413888 ~ 414282 (-)
G30594 sspo non-coding downstream 257828 266073 ~ 267927 (-)
G30593 NA non-coding downstream 265690 259434 ~ 260065 (-)
G30539 NA non-coding downstream 451605 73888 ~ 74150 (-)
G30784 NA non-coding upstream 178319 712712 ~ 733413 (-)
G30797 NA non-coding upstream 300065 834458 ~ 839109 (-)
G30809 NA non-coding upstream 353256 887649 ~ 894190 (-)
G30823 NA non-coding upstream 516692 1051085 ~ 1053885 (-)
G30871 NA non-coding upstream 692437 1226830 ~ 1232565 (-)
G30729 NA other downstream 25566 498732 ~ 500189 (-)
AMCG00018991 NA other downstream 48659 473449 ~ 477096 (-)
AMCG00018992 NA other downstream 70991 452955 ~ 454764 (-)
AMCG00018988 NA other downstream 188122 225374 ~ 337633 (-)
AMCG00018975 kcnh2b,kcnh2,LOC107713341,LOC106590277 other downstream 371230 144253 ~ 154525 (-)
AMCG00019007 LOC106613553,LOC108443229 other upstream 80005 614398 ~ 634293 (-)
G30849 NA other upstream 640131 1174524 ~ 1174983 (-)
AMCG00019024 NA other upstream 640638 1175031 ~ 1177566 (-)
AMCG00019031 LOC107567020,LOC106939174 other upstream 705318 1239711 ~ 1260637 (-)
AMCG00019034 NA other upstream 787221 1321614 ~ 1323596 (-)

Expression


Co-expression Network