AMCG00019007 (LOC106613553,LOC108443229)


Basic Information

Item Value
gene id AMCG00019007
gene name LOC106613553,LOC108443229
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 614398 ~ 634293 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019007
ATGGTGCTGGTTCTGTCTGTAGTCACACACTGGGCCCTGGTGCTGGTCGCTGctcagtctgtgtttgtgtcctttATGCATTTCTCAGTCAGGGGTCAGGAGATGCCCGGCCCTCAGGGACCCCTGCTGGTGCTACTGGCCCTGTTGTCCTGCACAGAGCCCCTGCAGCCCCTCCAGGCCAACTCCAATGAGGTTCTGAAGTCCAGTGAGGTGGAGCCCAGCAAAGCCCAGGTCAGAGAGGGACTGCCGCTCAGAGGGGGTCACGTCCAATcacatcacagcacagcacatccAATCAcaatgcagcacagcacagctcatCCAATCACATCACAGCACATccaatcacagcacagcataTCCAATCACATCACTACCTCATCAGGAGTGAAGCgtcCTCCCCCACATTGCCCTGGAAGCCTGGTGCCCCTGGGGGGAGCCGGGGGGTGCGGCTGCCCTGGAGACCTCATCCAGCAGGGAGAGAACTGCACCTGCCCCCCCGGGTTCAGCCTGCAGGGGGCGATGCTGTGCCAGGACGTGGATGAGTGTGGCGCAGAGAGCAGACACCCCTGTGGTCCCCACGCCAACTGTTCCAACACTCCGGGCTCCTTCCAGTGCCAGTGTCACAGGGGGTACCTGCGGGGGCCGGGGGGCTGCGAGGATGTGGACGAGTGTCAGCTGGCACAGGTGACAGGGCTGCAAGCCTGCGGGGGGGGGGCACAGTGCCAGAACTCCCCCGGCTCTTTCTCCTGCTCCTGCCCCCCCGGGTTCGTCCTGGCGCTGGACGGCAAGACCTGTGTGGatgtgGACGAGTGTGTAGACACCCCTGGTGTGTGCGCAGGGCAGGGAGTGTGTGAGAACACTCTGGGCAGCTACAGGTGTGTCTGTCAGCCGGGGTACCGAGGCAACGGCACACACTgcgaggATGAGAACGAGTGTGCATCGGGGCGGCACGGCTGCGATGCCAATGCGCGCTGTGGCAACATCATCGGCTCTTACTTCTGCCACAACGAGGCCGGCGGCTACCAGTGCCACTGCCACCAGGGCTACCTGCTCGCCACGGATGCACACAGCTGCACAGATGTGGACGAGTGTAAGCTGCAGAATGGGGGCTGCTCCCACAGTTGCTCCAACACAGCGGGGGGGCACGAGTGTGGCTGTCCCGAGCCTCTACTGCTGGACACAGACAACCGTACCTGCGTCAATGTGAGTTCCTGTACCCTGCGGAACGGTGGCTGTGCCCACAGCTGCACTGACCTGAGCGAGGGGCCGCTCTGCAGCTGCCGGCCGGGCTGGACCCTGGGCACTGACCACCGGAGCTGcctggATGTGGACGAGTGCGCTGATTTCACGAACGGCGGCTGTGAGCAGCTCTGTCTGAACCAGCCCGGGGGCTTCAACTGCAGCTGCAGGGACGGGTACGAGCCGCGCACCGACGACCTGACCAAGTGCCAGCCTGTGTGCTCACCCCCCTGTCAGAACTCGGGTGTCTGCACCGCCCCGAACAGCTGTGAATGTCCTGCAGGCTACCCAGGGCCTGGCTGCTCAGCCATGTGTGCCCCCCCCTGCGCTCACGGCGGCTCCTGTATGCGTTGGAACACCTGCCTCTGTCCCCCAGGCTGGACCGGACTGGGCTGCCACACCGCGGTGTGTGAGCTGCCCTGTGCCAATGGGGGGCGCTGCACTGCCCCGGATCTATGCCAGTGTCCTTCAGACTACAGCGGTCCCCAGTGCCTGATCCCGGTGACTGCACCCTGTGTACCCCCCTGCCAACATGGTGCCACCTGCAGCCCCTTCAACAAGTGCAGCTGCCCCGAGGGCACGACCGGCCTGCGCTGCGAGAGACTGACATGTCCCATCGTGACCACAGTGGTGAGCACTACGCGGGCGGTGCGCAGGGGCGTGCAGGAGAGCTATGTGGACCGCTGTGGACCGCTGGGCGTCCAGCTCTGCACCAAGTACAGACGCCTTAGTCAAGCAATGTACCGCAGGGACTGCATGCATCCCAGGGACCAGCCAGCCCTCCCTCCCGCACTGAGACAGCGGCTGTGGGACGGAAAGCCCAGCACACCCACTGCACTCCAGCCCGgaacaggacaggacaggacagaagAGGAGAGGtcatcacagcacagcacaacactgcacaGGACAGAACAACCCAGTCCAGCCCAGTGCCAGATGCAGCAGGGTGGTGTGGAGATGGCTGTCGAAAATAAGAGGCTGACCCTGAGTTTGGTCAATCCCAAGGTCAGGAGCATCATGCTcctgtacagagacatcctgcTTTAA
>TU38506
TGCGTTCAGATCATGTTTTCTGATAGTACCTGTGTAAACTTGTGTTTATGACTCTCTCTACTTCATGCAGACAGATTGCCCATAAAGATTCATGACTCTGCTGTGTGCGTCTGGGTGCTGTGGTTGCATGAGTGTGTGcgttagtctgtgtgtgtttgtaagacTAGACACTCTGTGAAATGCAGAGATCTGGCCAGTTGTAGTTGTGCTGTATTCTGCTGTGACAGAGAGATGAAGAcggagagtgagagggagagtgaggtCAGTGTTGTGACTGTGCTCTCCCCCCCGACAGCCACCTGCACCCCGCCCTGTCTGAATGGAGGGAGGTGTGTGGATGTGAACAAGTGCACCTGCACGGGGGGCTGGCATGGAGCCCGCTGTCAGATCGAACCGGTGCTGTGCCTGACGGGCTGTAAGAACGGCGGGGTGTGTGTGGGGCACAACCGCTGTCACTGTGCCAGCGGCTTCACGGGCAACTTGTGTGAGACAGCGGTGACTGCACCCTGTGTACCCCCCTGCCAACATGGTGCCACCTGCAGCCCCTTCAACAAGTGCAGCTGCCCCGAGGGCACGACCGGCCTGCGCTGCGAGAGACTGACATGTCCCATCGTGACCACAGTGGTGAGCACTACGCGGGCGGTGCGCAGGGGCGTGCAGGAGAGCTATGTGGACCGCTGTGGACCGCTGGGCGTCCAGCTCTGCACCAAGTACAGGTACTGCACACCTGCCCACATG
>TU38514
CCTGTTTCGGGGGAGAGGTGGGGGCTGTCTGAGGAGCAGCGTGTCTGGAGCAAGAGCAGCGCAGGTACACGTGTTATTCAGTCCGTGTCGCTCTGAATCTGTAAGCAGGCGCAAAGCGGCGCTATAATAGAACTGGAAACAAGACACGTCTCCGTTTCCACCGTCCAGCGAGCACACAGCGGATCTCAGCGCAGTCAGGGGTCAGGAGATGCCCGGCCCTCAGGGACCCCTGCTGGTGCTACTGGCCCTGTTGTCCTGCACAGAGCCCCTGCAGCCCCTCCAGGCCAACTCCAATGAGGTTCTGAAGTCCAGTGAGGTGGAGCCCAGCAAAGCCCAGGGCCCGGGGGAGACTGTGGAGAACGCAGTCGAGGGGCTGGATGGGCCGCTTAACACAGCGACCACAGgtcCTCCCCCACATTGCCCTGGAAGCCTGGTGCCCCTGGGGGGAGCCGGGGGGTGCGGCTGCCCTGGAGACCTCATCCAGCAGGGAGAGAACTGCACCTGCCCCCCCGGGTTCAGCCTGCAGGGGGCGATGCTGTGCCAGGACGTGGATGAGTGTGGCGCAGAGAGCAGACACCCCTGTGGTCCCCACGCCAACTGTTCCAACACTCCGGGCTCCTTCCAGTGCCAGTGTCACAGGGGGTACCTGCGGGGGCCGGGGGGCTGCGAGGATGTGGACGAGTGTCAGCTGGCACAGGTGACAGGGCTGCAAGCCTGCGGGGGGGGGGCACAGTGCCAGAACTCCCCCGGCTCTTTCTCCTGCTCCTGCCCCCCCGGGTTCGTCCTGGCGCTGGACGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019007 True 2292 mRNA 0.63 17 614398 633866
TU38506 False 738 TUCP 0.58 4 619039 622075
TU38514 False 798 TUCP 0.66 6 631692 634293

Neighbor

gene id symbol gene type direction distance location
AMCG00019006 NA coding downstream 4751 594775 ~ 609647 (-)
AMCG00019002 foxh1,LOC108431400,LOC106590409 coding downstream 80005 525755 ~ 534393 (-)
AMCG00019001 gpaa1 coding downstream 95551 514803 ~ 518847 (-)
AMCG00019003 maf1 coding downstream 117561 478027 ~ 496837 (-)
AMCG00018994 NA coding downstream 196132 416156 ~ 418266 (-)
AMCG00019010 NA coding upstream 35090 669383 ~ 670387 (-)
AMCG00019015 NA coding upstream 78577 712870 ~ 723666 (-)
AMCG00019014 NA coding upstream 93772 728065 ~ 737692 (-)
AMCG00019018 rhpn1,LOC106584065 coding upstream 350252 984545 ~ 992405 (-)
AMCG00019019 NA coding upstream 368300 1002593 ~ 1012013 (-)
G30760 NA non-coding downstream 90402 522119 ~ 523996 (-)
G30612 NA non-coding downstream 200116 413888 ~ 414282 (-)
G30594 sspo non-coding downstream 346471 266073 ~ 267927 (-)
G30593 NA non-coding downstream 354333 259434 ~ 260065 (-)
G30539 NA non-coding downstream 540248 73888 ~ 74150 (-)
G30784 NA non-coding upstream 78419 712712 ~ 733413 (-)
G30797 NA non-coding upstream 200165 834458 ~ 839109 (-)
G30809 NA non-coding upstream 253356 887649 ~ 894190 (-)
G30823 NA non-coding upstream 416792 1051085 ~ 1053885 (-)
G30871 NA non-coding upstream 592537 1226830 ~ 1232565 (-)
G30729 NA other downstream 114209 498732 ~ 500189 (-)
AMCG00018991 NA other downstream 137302 473449 ~ 477096 (-)
AMCG00018992 NA other downstream 159634 452955 ~ 454764 (-)
AMCG00018988 NA other downstream 276765 225374 ~ 337633 (-)
AMCG00018975 kcnh2b,kcnh2,LOC107713341,LOC106590277 other downstream 459873 144253 ~ 154525 (-)
G30849 NA other upstream 540231 1174524 ~ 1174983 (-)
AMCG00019024 NA other upstream 540738 1175031 ~ 1177566 (-)
AMCG00019031 LOC107567020,LOC106939174 other upstream 605418 1239711 ~ 1260637 (-)
AMCG00019034 NA other upstream 687321 1321614 ~ 1323596 (-)
G31035 NA other upstream 1071606 1705899 ~ 1710543 (-)

Expression


Co-expression Network