AMCG00019021


Basic Information

Item Value
gene id AMCG00019021
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 1098229 ~ 1114219 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019021
TTTCCCTGCTCCGGGGGGGATGGGTTTGGCACATTTCAGGGGGTCAGAGGTGAGGCCAACGGGAAGACACTGATTGGAGGAGGGGGAATCAGAAGGGAGGGGATGGCAGGACCCCCAGCGGCACAGACCACCAGCGGGACAGACCGCCAGTGGGACAGACCACCAGCGGGACAGACCCCCAGCGGCACAGACCACCAGCGGGACAGACCCCCAGCGGGACAGACCACCAGCGGGACAGACCCCCAGCGGGACAGACCACCAGCGGGACAGACCACCAGCGGCACAGACCCCCAGCGGGACAGACCACCAGCGGGACAGACTCCCAGCGGGACAGACCCCCAGTGGGACAGACCCCGGAGCACCCTGCCTCGCTGCGCGTTTACTGTCCCCGGGGACACAGTCCGCCTGTCGCCCCGGTGTGTCAGTGTCGCCCTGGCCCAGCCTCCGTCTGCCTCTCTGTCGCCCCGTACAGCTGTGGCCAAGCTGGGAGAACCAGGAAGCCGAGGCACAGTGCAGGAGTCTAGTGGACGAGGAGCTGCAGAAGAGCGAAGCGGGTCAGTGATCTGCTCTCGGCCGCAgccggacggacggacggacggacggacacGCAGAGGGACAGACAGCTCCTGCACAGCCCTGCCGCCGGACTGCGCTTACGTCACCAATAAGATAATACTCTCGGGCATACTGTACATAGAGGAGAGCCGCTACCTCAGGCTGTTCGAGACTGACCACCTGCCAGCCCACCTGCCCGTCTCACCCATGGGCACATGTGTTTCCTGTGACGTGGAGGTGAGCTGCCTGCACGCCCTGAAGGAGGCAGAGGCCGCCTTGCTGCAGGCGCTTGACACGGACGAGGCCCGGCTTCAGAGTGTCTTGCTCAGGGACGAGCTGGACGCCGCGCTGGCCATCACACTTGGCGCGCCCGTCTCCGTGGAGGTCGGAGAAGACTGGTGCCAGGGCGTGGTGCGGTACGTGGGCAGCATCACGCCCACTGGCTCCTCTATCATGCACAAGCTGCCCGGGGTGTTCTTCGGCGTGGAGCTGCAGgGTAAGGATGAGGGGAAGGGCCAGAATGACGGGAGTTTCGGAGCCACTCAGTTTTTCCGCTGTACCAAGAACTGCGGCATCTTCGCCCCCTTTACCAGGATCAGGCCCCCCCCGGCTCCGCCTGGTGACCTGCCCCTGCCAACCTCCCCCAGGGCCCCTCCCAGCCAGCTAGAGCCGCTGCAGCCCGGGGACAGGGTGCACTGGTTCCTGGAGGGCAACTCGGTTCAGCAGGGGGTGGTGAGGAGGCTGCAGAGGGTCGAGGAGCGCACCAggcatGACGCTGAGGTGCCGATGGACTGGGCAGGCGCAGTGGAGCCGGCAAGGGGCCAGGAGGTGAGCTTCACAGCGGAGGGGCTGCCCCTCAGCCTGAACGCCGTGGTGGAGGTGATGCTGTCGGAGGGACGCACGGTGTACGGGACGGTGCGCTGGATCGGAACCCTGCCCAACACCGAGGGGCTCAGAGAGGAGCCAGTGGGGGTCAGTGACGGGACGTTCAAGGGTCAGAGGCTGTTCCAATGTCCTACGCGCAGGGGGCTGTTTGTCAAGCTGCAGTCCTGCCGGCCTGACTCCCGCTTCCAAGCAaccgggggcggggggggcgcAGCCCCCGGGTCCCACACAGATTGGGATTGTGCAGTGCAAGGCAATGTCGCCCCCTTGTGGGCAGAGAAGGCAGTGCAGGTGCTGACGGGGACAATGAAGGGCATCCAGGGTCACTGCAACTCCTGCTACATGGACTCGGCTCTCTTCAGTCTGTTCTCGTGCTCCTCTGTGCTGGACTCTCTGCTGTTCAAAGCCACCCCTCAGAGAGACGCCCCCATCCAGACGACGCTGCTGCAGGAAATCGTCAACCCACTGCGCACCGTGGGGTTCGTGCCGGCCCGCAGTGTGATGAAGCTCCGCAAGCAGCTGAAGGAGGGAGGCCACTGCGCCAGCTTCACCACCGAGGAGAAAGaTCCTGAGGAATCTGTGGGTCAGAAGTTGCAGGAGGGGTACTGCTACCAGATCTTCCTGGACCAGAACCACAGCCTAGCGCTACCCACTGTGCGCCAGCTCCTGGAGCACTCTTTCCACAGTGCCCAGCTGCAGCTGGCAGAGGTGCCCTCCTGCCTGATCCTCCAGATGCCGCGGTTCGGGAAGAAGTTCAAACTGTTTGACAAGATTGTGCCGTCGCTGGAGCTGGACATCACAGACCTGCTGTGTGACGgccCACGGGACTGTGTGCTGTGCGGGACCCTGGCCACGGTCGAGTGCTCGGCCTGCTTTGGAGACGGCTCCTTCGGTGCCACAGGACTGAAGCAATTCTGTCAGCTGTGCAGCAAACAGGTCCACTCCCACCCCCAGCGACGAACTCACACCCCCTCTGTCCTGCGGCTGCCTGAGGGCTTCTCTCAGGGGAGGTCCCTGCGGCCGCCCCGGGACCTCTTGCAGCTGTTCGCAGTGCTGTGCATAGAGACCAGTCACTACGTATCCTTCGTCAGGCACGGTCCCGGCCCTGAAGACTGGGTGTTCTTCGACAGCATGGCCGATCGGCACGGTGATGAGGACGGGTACAACATCCCGGCTGTGCGTCCCTGCCCAGAGGTGGGCCGGTACCTGCAGATGCCACTGGGCCAGCTGGCGCTGCTGTCCCCGAGAGACATGGATGGCGTGGCCAAGAGGCTCTTCTGTGACGCCTACATGTACCTGTACGAGAGCCCCCGCATGGCCCTGTACCGCTGAGGAGCACCGccggggcaggggcaggggcggCCACAGAAATGGGGGCAGGGATAGACTGATGGACAGAGACAGTCTGGGACTGCGCCCACCTGTCCCGGCACTGACGCCCACTGCACCCTGGGGTGTTGGGAATCCCAATACCTGCTCACCTGCCCCGGATAAAGGTGCAACATAGATTGAGGGACTGAGACACAACACCAAACCCAAAATGGAGCACTCTCAAACAAAGCATGCTACCTCCGGCATGTGCGGTCGGCCCTGGGATTCGGACCGCCTTAGACAAACCCGCCGGCCTGCACTGCGTGACGCTGAAGACTGGCCCTGGACGAGACGCACGCTTTAGACAGCGGTACTTATAACCCACTGTGGGAAAGACACTGAGGCACTTTTCAGCCAGAGTTCAAGTGTGAAGTGTGAGCCTGTATTAAGAAgcaatcatatatttatataaccaAAAAGAATCTTTGCTGGGTGTGTCCATGTGTATCAATTAGTGCCTTGAGGGGGGGAAGCAGTTTTttaaaagtaagtaaataaatgactaaaCTTGC

Function

GO: NA

KEGG:

id description
K08601 CYLD, USLP2; ubiquitin carboxyl-terminal hydrolase CYLD

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019021 True 3323 mRNA 0.63 17 1098229 1114219

Neighbor

gene id symbol gene type direction distance location
AMCG00019016 mafa,LOC107704507 coding upstream 236832 860483 ~ 861397 (+)
AMCG00019017 NA coding upstream 250902 837999 ~ 847327 (+)
AMCG00019013 NA coding upstream 317600 780393 ~ 780629 (+)
AMCG00019011 NA coding upstream 347189 744154 ~ 751040 (+)
AMCG00019009 NA coding upstream 395983 701324 ~ 702246 (+)
AMCG00019020 NA coding downstream 63901 1178120 ~ 1183904 (+)
AMCG00019040 NA coding downstream 300391 1414610 ~ 1428982 (+)
AMCG00019041 NA coding downstream 439854 1554073 ~ 1557865 (+)
AMCG00019042 NA coding downstream 448804 1563023 ~ 1581623 (+)
AMCG00019050 NA coding downstream 514606 1628825 ~ 1641050 (+)
G30700 NA non-coding upstream 44344 1013011 ~ 1053885 (+)
G30699 NA non-coding upstream 71485 1009261 ~ 1026744 (+)
G30619 NA non-coding upstream 601709 443168 ~ 496520 (+)
G30583 NA non-coding upstream 726431 370446 ~ 371798 (+)
G30549 NA non-coding upstream 816085 227976 ~ 282144 (+)
G30723 NA non-coding downstream 24286 1138505 ~ 1139858 (+)
G30857 NA non-coding downstream 72178 1186397 ~ 1187225 (+)
G30866 NA non-coding downstream 81713 1195932 ~ 1196202 (+)
G30869 NA non-coding downstream 112610 1226829 ~ 1228441 (+)
G30874 NA non-coding downstream 123657 1237876 ~ 1238710 (+)
G30698 NA other upstream 97016 995327 ~ 1001213 (+)
AMCG00019012 NA other upstream 354146 739226 ~ 744083 (+)
AMCG00018999 NA other upstream 541325 549516 ~ 556904 (+)
G30589 NA other upstream 699557 395501 ~ 398672 (+)
G30527 NA other upstream 1023998 73792 ~ 74231 (+)
AMCG00019029 NA other downstream 83767 1197986 ~ 1199095 (+)
AMCG00019030 NA other downstream 99457 1213676 ~ 1237637 (+)
G30877 arhgap39,LOC106560380,LOC106584197 other downstream 139147 1253366 ~ 1253735 (+)
AMCG00019033 NA other downstream 204403 1318622 ~ 1321493 (+)
AMCG00019046 NA other downstream 471606 1585825 ~ 1605545 (+)

Expression


Co-expression Network