AMCG00019031 (LOC107567020,LOC106939174)


Basic Information

Item Value
gene id AMCG00019031
gene name LOC107567020,LOC106939174
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 1239711 ~ 1260637 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019031
ATGTATGCCAACCTGCTCACGGGCGAGTGCGTGTGGGACCCTCCCCAGGGCGTGCGCATCAAACGCACCAGTGACAACCAGTGGTGGGAGCTGTTCGACCCCAACACCTCCCGCTTCTACTACTACAATGCAGCGTCGCAGCGCACCGTGTGGCACCGGCCCCAGACCTGCGACATCATCCCGCTGGCCAAGCTGCAGACACTGAAGCAGAACACGGACTCGCCGCGCGCCTCGGCCAGCAACAGCCCCGGGCGCAACAGCAACAGCGCTGTGAGCCGCGAGGGCAGCACCTCGTCCTCGCTGGAGCAGGAGTTGCTGCTGGAGACCGGCGGCAGCACTGGGGCggggaagcagcagcagcagcagcagcagcagcagcagcaaggaCTGAGCAACACACTGGGCAGGGAGGAGCCTGAGAACTTCCTTTCGCACCCGGGCAACGGCTACTCCCCCTGCGAGGGCCCCCCCAGCGGGGTGGGGACGGGGGGGTCCGGGGGGGGCACCCGCTCGCGCCGGTCCTCGGGCAACGCACCCCCCGAGCCCGACAGCCCCTCCGTGTTCTACCCCGAGCGGCGGCAGCAGTCGCCCTTCCTGAAGCGCTCTGAGCTGGGGGGGTCCCCGTTGCTGGGGGGGGTCATCACAGGCGGCGGTGGGGGCGGGGGTCAGCTGCGGCGTGCTTCGGGGGACTCCCAGCCGCCCTCCCCTCGCTATGCCTATGAGCCTCCCCTGTACGAGGAGCCACCCTCGGAGTACCAGGCGCCCATCTACGAGGAGCCGCCCGCCGACATGCACTGCGAGGCGTCCCCCTATGGCAAGGCCTGCTCACCCTCGCCCTCCGCCTCCCCCCAGCAGAAGTCTCCGGCCCGCAAGCCTCAGCTGCCCCTGTTCCACTCCCCCAAGCAAGGCCACCACCACTCGCCCTTCCAGCAGCTCGTCCTCACCAAGCAGAAGTGCCCCGAGAAGTCCCTGAGCCTGGAGTACAGCCCCGCGGGCAAGGAGTACGTCAAGCAGCTGGTGTATGTGGAGCAGTCGGGCTCCACGCCGCGCTTCAAGACCGCCGACCGTCTGCAGCGCTACCAGACGGCCAACCCCGGGGGCAGCGGGGGCAGCTATGGGGGCTACGGCGGCTCCTACACCCTGCAGCACAGCCAGTCTCTCATCAGGGATCCCCGGGTGTGTGAGTACGGACGGGCGGACACGCTTGGGGGGCTGGGGGCAGAGGTGGGGGAGCTGAGGCAGCATCTGCTCTACGAGGACGCCATGTCCTGGTCCAGCAGCAGCCAGCACGACTCGCTGGCCTCCTCCTCAGCTGGCTACTCCCCCGGGGGCAACCGCAAGCGCAAGACCCGCAAGCCCTCGTTGCCCCAGGAGGTGCTGGCTCACTGCGGGGAGGTGGGCCCAGGGGCCGAGGGCGAGGTAGGCGGGCGGGGACCAGACTCGCCCCGCTCAGGATTCCCGGAGAGCTTCCTGGCGCAGGCGCGGCTGGCATGGGAGGCCCAGCAGGTGCACCAGCTCAAGCACCGGAGCAGCTGGGACGCCGCCCAGCAGCAGGGAGCAGGAGGGGGCGTGGGGGCCGGGGGAGGTGGCAGCACGCCGGGCCAGTCGGCACCGGGCGGCACCAAGGACGGGTACGAGAGCGACGGCGCggtgcccctgcccctgcccggGCCGGTGGTGCGGGCGTTCAGTGAGGACGAGGCGCTCGCCCAGCAGGACGGACGGCACTGGAAGCGGAGCACCTTCGAGAGGCTGGGCTTCCCGCAGGTGCTGCTGGAGAAGAGCCTGTCGGTGCAGACCAACCTGGCCTCGCCCGAGCCGTACCTGCACCCCTCACAGtcgGAGGACCTGGGCGCATGTGCTCAGTTCGAACACAGTCGTAATGCTCGCAGCATGATGGCCAGCGCCAGCTGCGTCTTCCCAGAGTTCACCCTGCGAAAGCCGCGCAAGGTGTCCATCGCTAACATGCTGGCCTGGAGCAGCGAGTCAATCAAGAAGCCCATGATTATGACCTCTGACCGGGGCGTCAAGAAGGAAGCGGTAGAGATCTTCAAGCTGATCCAGATGTACATGGGCGACCGGCGGGCCAAGACCGATCCCCTGAACGTGGCCCTGGAGGTGGCAGTCAAGGGCTGGAGCTGCCAGGGCCTGCGAGATGAGCTGTACATCCAGCTGTGCCGCCAGACCACGGAGAACTTCCGATACGACAGCCTGGAGCGCGGCTGGGAGCTCATGGCCATCTGCCTGGGCTTCTTCCCACCCACACCCAAGTTCCACTCCTACCTGGAGGGCTACATCTACCGCCACATGGACCCCCTCAACGACACCAAGGGTGTGGCCATCAGCACCTACGCCAAGTACTGTTACCGCAAACTGCAAAAGGCAGCTATCACTGGAGCCAAGAAGGGTCTGCAGAAGCCGAACCTGGAGGAGATCAAGCACGCGCGCAATGCTGTGTTCAGCCCCTCCATGTTTGGCAGCTCCCTGGAGGAGGTGATGGCGCTGCAGAAGGAGCGCTACCCGGACCGGCAGCTGCCCTGGGTACAGACACGCCTCTCGGAGGAAGTGCTGGGGCTCAACGGGGACCAGACCGAGGGCATCTTCAGggtGCCAGGTGACATCGATGAGGTGAATGCTCTGAAGCTGCAGGTCGATCAGTGGAAGGTGCCCACAGGCTTGGAGGACCCCCACATCCCAGCCTCCCTGCTGAAGCTGTGGTACCGGGAGCTGGAGCAGCCGCTGATCCCCCATGAGTACTACGAGGAGTGTGTCACTCACTATGACAACCCAGAGGCAGCGGTGTTCGCCCTACCTGCCAACGTGTCCATCACCAAGATGGACGTCAACAACCTGGCCATGGTGATGGCACCCAACTGCCTGCGCTGCCAGTCAGACGACCCCCGGGTCATCTTCGAGAACACACGCAAGGAGATGTCCTTCCTGCGAGGGCTGATCCAGCACCTGGACACCAGCTTCATGGACGGCCTACTATAGCCATCGGGgagcagatacacacacagcacacacacagtgtcacacacatagcacacaatctcacacacacacaacctatACTATACACTGAGCCCCCTGCCTTCTCCttccaaccacacacacacacacacacacacacaaactcttaTATAGCTCCCATACTTTTGTATTCTACACTTAccaaacacactcactcactggaATACAGGGTCCCATACTACAAATTCACACGCTGACAGACGCCACAATACAAGACATatggagacaaacacacacacactcatgtgTAAACTTGACAGATGTGGACAGACATAATTTGGGCAAACCAACGCACACACGCACTAGAGACAACTGCCACccataacaaaacacacaaacacacactcactcatactGGCATACAAACGCACGCCtgtgtccacacacacacactgacacgcacagagacgagagagagagagagtacggCTGCAGTACCGCCAACAGACAACAGACAGTCTGTCTCACTGCAGCCACCCCCCCAAGACCAGATCCCCAACtgtcacccccccacctccctcctgTTGTCTTTTGGACCGGGCCAGAGCACCGGGATGCAGGagatgcccccccccccgccacagCGAGCCACGTTCCTGCCACACTGCCCAGCCAGAGTCCGTGTGTGGTGCCACCCAGCAGGGCACGTGTCTGCATTCGTTCACTCTGGACTGTTTCTTGTCTTGAAGCCCTTACCCTCCCGGACTGTGAGGGAGAGTGTCCTGTGTGTGCGGCTTCTGCGTGACAGAGACGACGCACTGGTGCCAAtagcacacgcacacgcacacgctgCCGTACGGGGCCGCCTCTCTCAGCCTTAACGAGCACTACAGCTCCTTTTCTCGGCCTACAGAGGACCGGGCTCTCCGGATCACGGCTTTGCGAGGGGGAAATTGGCGTCCAAAGTGTCTTCCTGTTCCAGTTGCCCCCGGGGGCGCTCTGCCTGTGGGATTGTGGCATGCCTCTGGCGACAGTGGCGTGAAGTGTGCGCAGTGTGGCATCCTCCACTTTGCGACAGCGTGCGTTTTGGTGTTGTCGTCGCTGTGTTGTTTTCGTTCGAGGCCCCCTTGTTGTAAAACAGCCAATGCCAGGCAGTTACACTACACTCTTAGAAAAAATGGTTCTACACAGAACCATAGAGGGTTCTTTGAGTTATAGCTCTGGTGGAACCCTTTGTGGTTCTATGTAGAACCTGTTCAGAGGGGTTACATGAAGAACCCTGAAACAAAGCATTCTATACAGAACCGTTAATTTCTATAAGTTATATATAGAATCCTTTCAAAAGTTGTACACgtaacttaatttgttttccaaatacgaacttttaaatatctatgagtttatatatacaaacacacacacactgtagaaaTGCCCTCACAATTGTATATAACGTCACACTACTAGTGAAGTAACATCAGGTGTGTCCCCAGGGGGGTTAAGGGTACTGACAGAACCCCCCTATGAATAGATCTCCGCATAACCTCTTCTCTTGTGCAGCGCATTGGCGGGGGGTAATGCAATAGAGACAGGCGCTCGGTCTTCAGACAACACCCCCCCTTCAAGTTCGGCTCTCGGTCTTCGTACCCCCCATACAGTATGCTGGGGATGCCAATGAGTAAAATGACcaataatctataaatatattcacagaaaattatatacaatattaaaaaatatatagtttagcaaaaatcagcattttttccacattgaaaGATCTGTGAGATCTGTGCAGAATACCAATAATCTGTTCTACAAGAACAACCTAAAGTTTTAACAAGCAGCAGACAACGAATTGTAGTGAAAAATAGGCAAATGTCATTATCAACATGGGGTTGAAAGGTAGACAACCCCTTGACAGAgtagacacagacagagagtcatcacactacaaacaaataaataataatatacattattattcgCACAGTGACCTGTATACTCTCTTCAGAGTGACAGGCATGTTTTTGCTGTCATTCAACTTAAATATGAACATTTCCaaaaacagcattgttttttaaCCCCTTTGGGTATTCGATGCCAAACACATAATACAGCACAAAGGCAAATGGCAGCCCCCAATTGTAGTCCCGAAAGGCaatatacagaacatatttaaaacacttgGAAATGTTAGTTGCATTTTCTATTACACATCAGAATGTATTTGAGACAGATTATAAGGCTCACTGATCAGAAACATTAACCTTTCTGCTCGTGTTCGTCCAGACAGTATTGAAGAAGGTAAAGACGCTGATCCTTCAGCTCAGATGTCAGCGCTCTGTTCAGGATCTGAGGTGCCGTCTTGTCCAGCTGTGTGACTACCATCCTGTCAGTGTCCACCTGGAAGACCAAAGCTAGtgtttaaattgaacaaaacacacatgtgGCAGAGAATTCCATACATTCCATCAGCAATGACCAATGTTTGAATTCTTGGTCGAGGGAATTTCTCCAGGACTTCACTGGAGTAACTCTAGATTGGGCCTCAGCTGCCATTGCTCTGATATGGCCTGCAA
>TU38644
GTCCTGGTCCAGCAGCAGCCAGCACGACTCGCTGGCCTCCTCCTCAGCTGGCTACTCCCCCGGGGGCAACCGCAAGCGCAAGACCCGCAAGCCCTCGTTGCCCCAGGAGGTGCTGGCTCACTGCGGGGAGGTGGGCCCAGGGGCCGAGGGCGAGGTAGGCGGGCGGGGACCAGACTCGCCCCGCTCAGGATTCCCGGAGAGCTTCCTGGCGCAGGCGCGGCTGGCATGGGAGGCCCAGCAGGTGCACCAGCTCAAGCACCGGAGCAGCTGGGACGCCGCCCAGCAGCAGGGAGCAGG

Function

NR:

description
PREDICTED: rho GTPase-activating protein 39-like

GO: NA

KEGG:

id description
K20649 ARHGAP39; Rho GTPase-activating protein 39

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019031 True 5555 mRNA 0.57 9 1239711 1260637
TU38644 False 297 lncRNA 0.72 1 1256680 1256976

Neighbor

gene id symbol gene type direction distance location
AMCG00019032 NA coding downstream 46184 1191233 ~ 1193527 (-)
AMCG00019022 NA coding downstream 50236 1185228 ~ 1189475 (-)
AMCG00019027 NA coding downstream 68537 1169873 ~ 1171174 (-)
AMCG00019028 NA coding downstream 70596 1160804 ~ 1169115 (-)
AMCG00019026 NA coding downstream 80857 1138221 ~ 1158854 (-)
AMCG00019036 NA coding upstream 54439 1315076 ~ 1315516 (-)
AMCG00019035 NA coding upstream 64226 1324863 ~ 1344760 (-)
AMCG00019037 NA coding upstream 99184 1359821 ~ 1362959 (-)
AMCG00019038 NA coding upstream 166580 1427217 ~ 1432739 (-)
AMCG00019039 NA coding upstream 193914 1454551 ~ 1470419 (-)
G30871 NA non-coding downstream 7146 1226830 ~ 1232565 (-)
G30823 NA non-coding downstream 185826 1051085 ~ 1053885 (-)
G30809 NA non-coding downstream 345521 887649 ~ 894190 (-)
G30797 NA non-coding downstream 400602 834458 ~ 839109 (-)
G30784 NA non-coding downstream 506298 712712 ~ 733413 (-)
G30900 NA non-coding upstream 96671 1357308 ~ 1358163 (-)
G30932 NA non-coding upstream 244927 1505564 ~ 1505917 (-)
G31018 NA non-coding upstream 328942 1589579 ~ 1590721 (-)
G31038 nrbp2,LOC108267406,LOC108413492 non-coding upstream 471948 1732585 ~ 1733587 (-)
G31064 klhl18,LOC107657445 non-coding upstream 588901 1849538 ~ 1851593 (-)
AMCG00019024 NA other downstream 62145 1175031 ~ 1177566 (-)
G30849 NA other downstream 64728 1174524 ~ 1174983 (-)
AMCG00019007 LOC106613553,LOC108443229 other downstream 605418 614398 ~ 634293 (-)
G30729 NA other downstream 739522 498732 ~ 500189 (-)
AMCG00018991 NA other downstream 762615 473449 ~ 477096 (-)
AMCG00019034 NA other upstream 60977 1321614 ~ 1323596 (-)
G31035 NA other upstream 445262 1705899 ~ 1710543 (-)
AMCG00019059 NA other upstream 621817 1882454 ~ 1896432 (-)
G31082 NA other upstream 671704 1932341 ~ 2083271 (-)
G31130 NA other upstream 917343 2177980 ~ 2178650 (-)

Expression


Co-expression Network