AMCG00019046


Basic Information

Item Value
gene id AMCG00019046
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 1585825 ~ 1605545 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019046
ATGGCTGTAgctaatAAGTCTCCCTCCCAGACGTCCAAGGAGCCAGTGGAGACGGTGACATACTCCAGAGTGTCCTGCCAGGTCAAGGAGCCAGCCCTGCCCCTCCAGCCAAGTGTCAGAGAAAGAGGAACTGATGACAGGAAGCGACCTGAAGCCAAACAGGAACTGAACGTCAGTAAAGAGCTGCTGTCCCTGAAGGAAGACATGGCTCTGattgtcttcctcctcctcgctAGTTTTCCAGgtggTGACGCCGTGTCAACACTGAGAAAGACCAGTGTCCTGAGAGGAGCATCAGTCACCATCCCTTGTCACTATGAGGACAAATACAAAAGCCATGTGAAATACTGGTGCTCTGGATATTACTGGACAAGCTGTGAGTCTCTAAAAAGGACTGACTCTCTAATCACACAGAGTGATAAAGTGTCCATCTCTGATGATCCAGCCCAGGGAGTCTTCACTGTGACCATGAGGGGACTGAAGACGGGGGACACAGGCTGGTACTGGTGTGCTGTGGAGATAGGGGGGTACGGCACACCTGATGACAGAGCATCCCTGTACCTCACAGTTACTGAAGTCACGCGAGGGGACACATACGTCACGATGTTATCAACGAACACGGCATCACAACAGCAGGTATAA
>TU38719
CAAAAGCAGGAGGGTAAACACAATTTCCTATTGGTGTGGATGATAATTGATGTTACTCATGTCCCCGTATTTATTTGATGCTGGAACTGAGATTGTTACACTTTAAGACATCAAGtaatattgttttccaaattcCAACATAAAGAAATATCTGCAGAAGAACTGTAGGATAAGaacaatgtcttattttttatttttttatgataaatCTGCTCATTTTCACTTAATGTTGAATTTAGGATTCACTGGCCCGGTCCTTTAAAAAGAGATAAGACATCTAAACAATATGTACAGTGTTTCATATATTTTGGGTTGCtagttataaaatataattacctTCACCACAAGAATTCTTTGCCTAAAACAAGACATAGAAACTTCCTgagatttgtaatgatttaattatTTGTTTCTCGTTTCTTTTCAAGTTTAATTGCTCTCTCATCCCACTCCATGAGCAAGGTTGGAGACGCAGGGCAGCGGCAACCATGATGGCATTCTCAGATTGTCCTCCCCGCTGTTTTAATATGGACACGGACACAGACATGCAAGGGAAACTAAGGGGAAGGGCTTCTAGGAGTGAGAGCAGGTCCCCTTACACAGAGGGACCAGCAGACAGACCATATAAAATGtcccaaagtgctttacaatgAGAAACACGTctaaaacaaccccccccccacacacacacacacacattttcacgCTTGCTGCTCATAGATGGCCCATTGTCTTCTTTCAATACCTGATGGCTTGCAGTCTGGTCTCAGTGAGTCATCCAAGTGAGTTAGCAGTGAGCAAGAGAGGCAGACAAGAGACAGATCTGACCCCGGGTTTAagtaaatttattttttcctgaggAAAATTAATGACAGAAATTAGCCACTTCTTCTGACGTTCAGAACTTGTCAACTGAGCAGAAAATCCTAGACACACCTGTGGGTCGAAACATAAAGTAACTTCTTGTTCANNN
>TU38720
CAAAAGCAGGAGGTTTAATTGCTCTCTCATCCCACTCCATGAGCAAGGTTGGAGACGCAGGGCAGCGGCAACCATGATGGCATTCTCAGATTGTCCTCCCCGCTGTTTTAATATGGACACGGACACAGACATGCAAGGGAAACTAAGGGGAAGGGCTTCTAGGAGTGAGAGCAGGTCCCCTTACACAGAGGGACCAGCAGACAGACCATATAAAATGtcccaaagtgctttacaatgAGAAACACGTctaaaacaaccccccccccacacacacacacacacattttcacgCTTGCTGCTCATAGATGGCCCATTGTCTTCTTTCAATACCTGATGGCTTGCAGTCTGGTCTCAGTGAGTCATCCAAGTGAGTTAGCAGTGAGCAAGAGAGGCAGACAAGAGACAGATCTGACCCCGGGTTTAagtaaatttattttttcctgaggAAAATTAATGACAGAAATTAGCCACTTCTTCTGACGTTCAGAACTTGTCAACTGAGCAGAAAATCCTAGACACACCTGTGGGTCGAAACATAAAGTAACTTCTTGTTCANNN
>TU38721
CAAAAGCAGGAGGagtAAAAGAGCAGGACGAGGAGATATTAAAGATTTCCCCCAGGACACGGCCTTCCTATCGTCCGAGGAGCTGGACCGGAACGTGACCTACACCACAGTGTCCCACCAATGTAAAGATCCGGCCTCAGCTCTACCTAAGTCTCCCTCCCAGACGTCCAAGGAGCCAGTGGAGACGGTGACATACTCCAGAGTGTCCTGCCAGGTCAAGGAGCCAGCCCTGCCCCTCCAGCCAGTAAACTATCTTTTAGCTATTGTTGGTCTTGTTTCTCGTTTCTTTTCAAGTTTAATTGCTCTCTCATCCCACTCCATGAGCAAGGTTGGAGACGCAGGGCAGCGGCAACCATGATGGCATTCTCAGATTGTCCTCCCCGCTGTTTTAATATGGACACGGACACAGACATGCAAGGGAAACTAAGGGGAAGGGCTTCTAGGAGTGAGAGCAGGTCCCCTTACACAGAGGGACCAGCAGACAGACCATATAAAATGtcccaaagtgctttacaatgAGAAACACGTctaaaacaaccccccccccacacacacacacacacattttcacgCTTGCTGCTCATAGATGGCCCATTGTCTTCTTTCAATACCTGATGGCTTGCAGTCTGGTCTCAGTGAGTCATCCAAGTGAGTTAGCAGTGAGCAAGAGAGGCAGACAAGAGACAGATCTGACCCCGGGTTTAagtaaatttattttttcctgaggAAAATTAATGACAGAAATTAGCCACTTCTTCTGACGTTCAGAACTTGTCAACTGAGCAGAAAATCCTAGACACACCTGTGGGTCGAAACATAAAGTAACTTCTTGTTCANNN

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019046 False 642 mRNA 0.52 5 1585825 1605545
TU38719 True 973 lncRNA 0.39 2 1597798 1599229
TU38720 False 558 lncRNA 0.46 2 1597798 1599229
TU38721 False 839 lncRNA 0.48 3 1597798 1599229

Neighbor

gene id symbol gene type direction distance location
AMCG00019042 NA coding upstream 4202 1563023 ~ 1581623 (+)
AMCG00019041 NA coding upstream 27960 1554073 ~ 1557865 (+)
AMCG00019040 NA coding upstream 156843 1414610 ~ 1428982 (+)
AMCG00019020 NA coding upstream 401921 1178120 ~ 1183904 (+)
AMCG00019021 NA coding upstream 471606 1098229 ~ 1114219 (+)
AMCG00019050 NA coding downstream 23280 1628825 ~ 1641050 (+)
AMCG00019052 NA coding downstream 38822 1644367 ~ 1658275 (+)
AMCG00019053 nrbp2,nrbp2a coding downstream 125350 1730895 ~ 1740826 (+)
AMCG00019051 LOC106568618 coding downstream 140177 1745722 ~ 1758318 (+)
AMCG00019054 NA coding downstream 156129 1761674 ~ 1762096 (+)
G30939 NA non-coding upstream 4336 1581271 ~ 1581489 (+)
G30937 NA non-coding upstream 32963 1552644 ~ 1552862 (+)
G30910 NA non-coding upstream 169662 1415951 ~ 1416163 (+)
G30903 NA non-coding upstream 175867 1409471 ~ 1409958 (+)
G30887 NA non-coding upstream 275444 1310106 ~ 1310381 (+)
G30996 NA non-coding downstream 332275 1937820 ~ 1938218 (+)
G30943 NA non-coding downstream 433102 2038647 ~ 2083269 (+)
G31104 NA non-coding downstream 491636 2097181 ~ 2099152 (+)
G31117 NA non-coding downstream 571603 2177148 ~ 2177356 (+)
G31141 NA non-coding downstream 583423 2188968 ~ 2209189 (+)
AMCG00019033 NA other upstream 264332 1318622 ~ 1321493 (+)
G30877 arhgap39,LOC106560380,LOC106584197 other upstream 332090 1253366 ~ 1253735 (+)
AMCG00019030 NA other upstream 348188 1213676 ~ 1237637 (+)
AMCG00019029 NA other upstream 386730 1197986 ~ 1199095 (+)
G30698 NA other upstream 584612 995327 ~ 1001213 (+)
AMCG00019064 NA other downstream 256284 1861829 ~ 1885551 (+)
G31110 NA other downstream 536285 2141830 ~ 2147563 (+)
AMCG00019089 NA other downstream 914559 2520104 ~ 2618052 (+)
AMCG00019096 LOC107727496 other downstream 1488907 3094452 ~ 3100171 (+)
AMCG00019100 crem,crema,LOC105019435,LOC106578540,LOC108428923,LOC103396770 other downstream 1585067 3190612 ~ 3210890 (+)

Expression


Co-expression Network