AMCG00019056 (klhl18,LOC107657445,LOC107733883,LOC107701005,LOC107730797)


Basic Information

Item Value
gene id AMCG00019056
gene name klhl18,LOC107657445,LOC107733883,LOC107701005,LOC107730797
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 1842788 ~ 1852369 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019056
cacaaaaacacaaagtaaatggTGCAATATGGGTGTATATGATGTCTCAGTGCCACTGGGGAGACGACCGAGCGCCGGGGCCTCCTCTCACTTCCTGCACCGGCCGCCAGGCGGATTCCTCGCCCAGGCTGGCGTACGGCGGCCCGTGAGGTTCAGTTCCGTCTGCCGTCCTCGTCGCTGAGTATTCGgtctttccttcttcttctcctttttctctCCCAATGAAGATGGAGGACCTGATATTCGAGGAACTGGAGGACTTGATGCACTTCTCGGTCAGCGACCTGCCGGAGCGGGGCTACGCGGTGATGGAGGAGATCCGCAGGCAGGGGAAGCTGTGCGACGTGACGCTCAAGCGCAGCCGTGCTGTGGGCGCCGCACTGCCGTGTTTCACCTTCCGACTGCCCGCCTCGCCCGGAAGTGAGCCGGCCGTGTCAgtGGGGGATCACAAGTTCAGTGCCCACCGGATCGTGCTGGCCGCCTCCATCCCCTACTTCCACGCCATGTTCACCAATGACATGATGGAGTGCAAGCAGGATGAGATCGTAATGCAGGGGATGGACCCCAGTGCTCTGGAAGCCCTGATCAACTTTGCCTACAATGGCCGTGTGGCGATCGACCAGCAGAACGTGCAGGCGCTGCTGATCGGGGCCAGCTTCCTGCAGCTGCAGAACGTCAAGGACGCCTGCTGCTCCTTCCTGAGGGAAAGGCTCCACCCTAAGAACTGCCTGGGTGTGCGTCAGTTTGCGGAGACGATGATGTGCACCACACTGTACGACGCAGCAAACAGCTTCGTGCAGCAGCACTTTGTGGAGGTGTCCATGTCCGAGGAGTTCCTGGCCCTGGGGCCCGAGGAGGTGCTGGAGCTGGTGGGCCGGGACGAGCTCAACGTCAAGGCCGAAGAGCAGGTGTTCGAGGCGGTGCTGGCGTGGGTGCGGCACCAGCGCGAGGACCGGGAGCCACGGCTGCCTGAGCTGCTGTCCAAGACGCGTCTCCCACTGTGCCGCCCGCAGTTCCTCTCTGACCGCGTCCAGCAGGAGGAGCTGGTGCGCTGCTGCCACAAGTGCAGGGACCTGGTGGATGAGGCTAAGGATTACCACCTGATGCCTGAGCGGAGGCCTCACCTGCCGGCCTTCAAGACCCGCCAGCGCTGCTGCACCTCCATCGCCGGGCTCATCTACGCTGTTGGGGGCCTCAACTCCGCAGGTGACTCTCTGAACGTGGTGGAGATGTTCGACCCCATTGGCAACTGCTGGGAGCGCTGCCAGCCGATGAGCACGGCCCGCAGCCGGGTGGGCGTGGCCGTGGTGAACGGGCTGCTGTACGCCATCGGGGGCTACGATGGCCAGTCGCGGCTCAGCACGGTGGAGGTGTACAACCCCGAGACGGACACCTGGACACGCGTCGCCAGCATGCACAGCAAGCGCAGCGCCATGGGCACCGTGGTGGTGGACGGACAGATCTTCGTGTGCGGCGGCTACGACGGGAACTCGTCCCTCAGCTCTGTGGAGTGCTACTCCCCCGAGGCAGACAGGTGGTCGCTGTCCACTGCGATGAGTGCCAGTCGCAGCGCAGCCGGAGTCACTGTGTTCGATGGCCGGATCTTCGTCTCCGGGGGCCACGACGGGCTGCAGATCTTCAACTCGGTGGAGTCCTACAACCATCACACGGCCACCTGGCACCCAGTGGCAGCCATGATGAACAAGCGCTGTCGGCACGGTGCCGCAGCCCTGGGCAGCAGGCTGTACGTGGCCGGGGGCTACGACGGCTCGGGCTTCCTGAGCGGGGTGGAGGTGTACAGCTCCATCGCCGACCAGTGGAGCCATGTGGTGGCCATGAACACTCGCCGCAGCCGCGTCTCCCTGGTGGCCAACTGCGGCCGGCTGTATGCGGTGGGCGGCTACGACGGCCAGTCCAACCTGAACTCGGTGGAGATGTACGACGGCGAGACCAACTGCTGGACCTTCATGGCGCCCATGGTGTGTCACGAGGGTGGCGTGGGCGTGGGCTGCGTGCCTCTGCTGCCGGCCTAGCCCTGCCCCGGCCCGCCCCCCGCCCTCCTggcctctcctcctccccccgtgtttctcttgtttgttgttgttggtttgtttttacataatgATGTGAAACACAAGtgcagtgggagagagagagaggaaagaaaatcaTTCCACAGACAGCAGGTGTTCCTcagagagggaggtggggggtgtgtTGTTAAATGGGATCTATTAAACTGACAAAGAGGGAGTTGTacacaaacactacacacagagctcctctctctctctctctcctgcccactggtgtgtgggggtggagggTGTGACTGATATCAGAGGCCCACActtggcctgtgtgtgtgtgtgtgNNNNNNNNNNtgtgtgtgtgtgtggtgctgcCATCGCCCTCTGGCAGGGCCTCAGCCTCCCGGCGCCCCCGCAGAACTGACTGGGACATGGGGCTCGGCCAAGGGGGGGTGACTTCAGCGTCTGCCAGAGGCACAGAACAGGAGGATGTGAAGGTCTGCCCGCTGTGGGAGGAGGGATGGGGATTGTGGGGTCTATGACTTGGGGAAGGAAGGCACTGATGTGGTATGGTATCCGATGAGAGTGATTGTGATTGGACGCACACGGCCGACTCCGAGTCCTCTCTGCACTCACGGCAGCCTGCGGTGAAGACCTCCAAACAGTAGCCGGCTGTGTGGCTCTCCCTGCGCTTTTGCCTCCCTGTCCCCTCTGGGTCCTGGTTGTCTCCAGTCGTGCAAAGTGCAGCACACGGTCGTACTGCTCAAGTGCTCAATAGAAGGACAATTGAAACAAAAGCCGCCCCCCTGAGCTTGTTACTCACGTCATGATCCATCCTTTCAGACAACGGATAAAAAcaacagagaagagaaaaagcTATCAACCTCACCTCAGGAAAACCCTCATGCCTGCCGGCCGAGCGGAGACGCACACAGGCACACGAAGCGCTCCACATACACGGCACAGTGTCGGTCTCTTCTTCTCCGACTGGACTGGAGGGGACTTCCATGGCGTGTTCCTCACTGTCCTGCTGCCGGTGTGGGGCCTGGCTCTCCTGTCTGTGGGCTCCCCCTCCTCCCAAGCCTCCAACATCTTctgcaccaaaaataaaacgcaGCACAGGACAGGGGCATTGACAGTGGGCATATCGAGGGGAACAGAggactttgtttttctgtcgGTGAATTGGATGTGTTTTGAGGCAAATCTGAGATCCGGCAAAAAAGATGTGTAACAGGATCCTAGTGGGGAAAGAATACTGTGAAACTTCTAGgaattatcattattgttatcattgttattgttcTAAGTAATTATACATATGTTATGCactgttgttattaataattatttccttGCATTCACAATGATTCCATTATTTTTACTACTCTTTTGGTACTGTACCTCaaactgtaatatttatttttatttccttctctaatgttttttttttctgttgcacaTAACGGTTTGGAATAACCAGCAGCCTGTAAAGatttattattgtgatgattaatatgatgatgactgttgttgttgctgtacgAGTGTGGTATAGTGAGCGGATCAGTCACTGCCCTGTCTGCGCACAGCTCTGTATCTACCTCCTGGGAGAGGAGTgtgaaacattaaacaaatgaactGCAGAACACAAACGTTCATTTTAATACATGATTTAAAGCTCTCCTTAAAGCAAACCGTCGAGCCCCTCCTGACAGTGTGCGTCTTTAAAGGAAGGGTTTGTGGCAGCTGTACTGCTGGCCAGGTTGTCACTGGTGCGGGAGGAGGCAGAAGCTGCTGTTGGGGGGGAGACCGGGGACTATGATCGCCTGGGCCTGTTTGGTTGAGTGACATCTCTCCAGTCTCTCCATTAACTGAGGTTGAGATGCCTGACCCGAGGGGAACACTGATAGGTGAACTTGACTGCGGCTTTTCTACTGAACTAGCTGCTGGAGTGACCCATGGACCCCCGCAACGGCCACTGGAGGAAGCGGTCCCGAAGTGTAGCAGTGCACAGGTGCGAAGACTTGCGGTTCTCCATGCGTCTCCACTGCCCGGTTCAGTGAGGCACAGCTCTGCCACGCGACTGATTGTGTACCTCACTCCGAATCATTGGTACTGTAAGGACTGGGAAAGAGACGGCAGATGAGTAATATAAATGAGTTGGAATTGTGCAGGTCACAGCTCAGAGTGCAACGTGGCACAGCGCCGGGTTTTCTGGCTCCACactgcagctccagctccggctgCTTTTCACCAGCTCCAGCACCAAAGCCACAGAAAACTGTAAACTAGGACGAGATCATTATTTATGAAGTGTTTTTAAGTTGTGTTGCTTTGCTACATTTTTTATGATGATAAAAGACAGAAGAATATAGAATTGTGGTTTTAAAGCctcagtgttttatttacttttgtgtaaATAACTAACAAACACTGCCCGCTGTTtttatgtacttt

Function

symbol description
klhl18 Orthologous to human KLHL18 (kelch like family member 18).

NR:

description
PREDICTED: kelch-like protein 18

GO: NA

KEGG:

id description
K10455 KLHL18; kelch-like protein 18

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019056 True 4490 mRNA 0.56 11 1842788 1852369

Neighbor

gene id symbol gene type direction distance location
AMCG00019057 NA coding upstream 11511 1783777 ~ 1831277 (+)
AMCG00019054 NA coding upstream 80692 1761674 ~ 1762096 (+)
AMCG00019051 LOC106568618 coding upstream 84470 1745722 ~ 1758318 (+)
AMCG00019053 nrbp2,nrbp2a coding upstream 101962 1730895 ~ 1740826 (+)
AMCG00019052 NA coding upstream 184513 1644367 ~ 1658275 (+)
AMCG00019060 NA coding downstream 123221 1975590 ~ 1980497 (+)
AMCG00019063 NA coding downstream 164777 2017146 ~ 2030576 (+)
AMCG00019062 NA coding downstream 178885 2031254 ~ 2034414 (+)
AMCG00019061 NA coding downstream 209348 2061717 ~ 2062756 (+)
AMCG00019068 NA coding downstream 317707 2170076 ~ 2174807 (+)
G30939 NA non-coding upstream 261299 1581271 ~ 1581489 (+)
G30937 NA non-coding upstream 289926 1552644 ~ 1552862 (+)
G30910 NA non-coding upstream 426625 1415951 ~ 1416163 (+)
G30903 NA non-coding upstream 432830 1409471 ~ 1409958 (+)
G30887 NA non-coding upstream 532407 1310106 ~ 1310381 (+)
G30996 NA non-coding downstream 85451 1937820 ~ 1938218 (+)
G30943 NA non-coding downstream 186278 2038647 ~ 2083269 (+)
G31104 NA non-coding downstream 244812 2097181 ~ 2099152 (+)
G31117 NA non-coding downstream 324779 2177148 ~ 2177356 (+)
G31141 NA non-coding downstream 336599 2188968 ~ 2209189 (+)
AMCG00019046 NA other upstream 237243 1585825 ~ 1605545 (+)
AMCG00019033 NA other upstream 521295 1318622 ~ 1321493 (+)
G30877 arhgap39,LOC106560380,LOC106584197 other upstream 589053 1253366 ~ 1253735 (+)
AMCG00019030 NA other upstream 605151 1213676 ~ 1237637 (+)
AMCG00019029 NA other upstream 643693 1197986 ~ 1199095 (+)
AMCG00019064 NA other downstream 9460 1861829 ~ 1885551 (+)
G31110 NA other downstream 289461 2141830 ~ 2147563 (+)
AMCG00019089 NA other downstream 667735 2520104 ~ 2618052 (+)
AMCG00019096 LOC107727496 other downstream 1242083 3094452 ~ 3100171 (+)
AMCG00019100 crem,crema,LOC105019435,LOC106578540,LOC108428923,LOC103396770 other downstream 1338243 3190612 ~ 3210890 (+)

Expression


Co-expression Network