AMCG00019064


Basic Information

Item Value
gene id AMCG00019064
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 1861829 ~ 1885551 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019064
ACGCACACCTGCGCAGCCGCGGTGTGTCCCGCTGTGTGCGCGCATTGCGGGAGGAGCCCCGCACTAGAGGCGCCGCCGGGTGCGCTGTGCGCGCAGTGCACCGTCAGAGCCCCAGCGGACAGGATGCGGGCCGCGCTGCTGCTGAGTGTGCTGGCCGTCGCGATGACCCTGGCGGCGGCTGGACTTGTTCAAAACGGAACCAGGAGCAACACCCAGCCAGTGAGGGCACTAATAAGTACCTACTCTGGCAGTGAACCGGCCCCAGCCTGCAGGTTGCTTGGCCACAGTGAGAGCAGTAAACACGGGGGCCTGGCAGGGGACGTGCTGGCTGGGATTGAGCTGCAGAGCCAGGAGCAGGCTGATCTGCACAGTTCATACGTGTTTGGAGCGACAATTCCATTGGAAGGCGACTCCAGCCAACCCGAAGAAGTGTGGAAGAGATTCCTGAAATCGAATGCTACTGACCCAGagAATCGCACCAATCAGTCAGAGCCGTGTTCGAGCAGCGGAGGGAACGGCACCCGGGCCTGTGAACTGCAGAGACTCAATGGAACCGGACTCAATGAGACGGACCCACAGCCAATCCAGAAAGGACCACCCTGTTTTGGTTGTGCGATTCCCTTTGACGGCAGTGAGGAGCAGGCCAGCAGTGTGCAGGACCGGATCAACAGACTGCTGCAGCTGGAGGGGGAGCAGCAGAATCGGAGCAATCAGTCAGAGCCGTGTTCGAGCAGCGGAGGCAATGGCACCCGGGCCTGTGAACTGCAGAGACTCAATGGAACCGGACTCAATGAGACGGACCCACAGGCTCCACTGCAGAAGGAGGCCGGACACACAGAGGACAAGGACTCCCCACACGAGGAGACTTTGGTTGCCCCACCCACTCCTGATAACCCAGTTACCAAACCAAAGAAGGCCAAAAGGAAGAAAAGCAAGAAGTTAATATTCAGTGTTTCGGTTCCCTTTGACGGCAGTGAGGAGCAGGCCAGCAGTGTGCAGGACCGGATCAACAGACTGCTGCAGCAGCAGGCAGAGCAGCAGGCACCTCTCGGGGCTTCGGGATGGGGCAGGCCACCGTCAGAGCTGCCGGATGCGGGGCGGGAGGAGGGGGCTGCTGAGCCCGGGCCGGTGCGCCACGGGCTGGGCGAGGAGGAGGGCTCCGCAGGGCCACAGGGCCGGGTCCGCAGGGCAGCACAGCCCCTGACGCGGAAGCCCCCACGACCGTGTCCCGGATGCTTTGCCGTCATAGGCGACACCAGTATTGGCGTGGGGCCGATCACGACTAGTAGTGTGACGGTCTTGTGCCAAACCCCTCCCAGTGGAGGTGCCACGAGCTATAAACAGAAGCGTGGAAAAATGCAC
>TU38794
GTGGTCCTCCTGCAGAACCTGACGCACACCTGCGCAGCCGCGGTGTGTCCCGCTGTGTGCGCGCATTGCGGGAGGAGCCCCGCACTAGAGGCGCCGCCGGGTGCGCTGTGCGCGCAGTGCACCGTCAGAGCCCCAGCGGACAGGATGCGGGCCGCGCTGCTGCTGAGTGTGCTGGCCGTCGCGATGACCCTGGCGGCGGCTGGACTTGTTCAAAACGGAACCAGGAGCAACACCCAGCCAGTGAGGcaaaagaaaaggaagaccAAAGTTTTCGGCAACTTAAATCCGCTGACGAATGACAGGGGCCTGGCAGGGGACGTGCTGGCTGGGATTGAGCTGCAGAGCCAGGAGCAGGCTGATCTGCACAGTTCATACGTGTTTGGAGCGACAATTCCATTGGAAGGCGACTCCAGCCAACCCGAAGAAGTGTGGAAGAGATTCCTGAAATCGAATGCTACTGACCCAGagAATCGCACCAATCAGTCAGAGCCGTGTTCGAGCAGCGGAGGGAACGGCACCCGGGCCTGTGAACTGCAGAGACTCAATGGAACCGGACTCAATGAGACGGACCCACAGGCTCCACTGCAGAAGGAGGCCGGACACACAGAGGACAAGGACTCNNN
>TU38795
AGGACTCTTTCCTGATGCCATCCTCATCTGTGCTCTGTTTTTGTTAGCCAATCCAGAAAGGACCACCCTGTTTTGGTTGTGCGATTCCCTTTGACGGCAGTGAGGAGCAGGCCAGCAGTGTGCAGGACCGGATCAACAGACTGCTGCAGCTGGAGGGGGAGCAGCAGAATCGGAGCAATCAGTCAGAGCCGTGTTCGAGCAGCGGAGGCAATGGCACCCGGGCCTGTGAACTGCAGAGACTCAATGGAACCGGACTCAATGAGACGGACCCACAGGCTCCACTGCAGAAGGAGGCCGGACACACAGAGGACAAGGACTCCCCACACGAGGAGACTTTGGTTGCCCCACCCACTCCTGATAACCCAGTTACCAAACCAAAGAAGGCCAAAAGGAAGGGCGAGGAGGAGGGCTCCGCAGGGCCACAGGGCCGGGTCCGCAGGGCAGCACAGCCCCTGACGCGGAAGCCCCCACGACCGTGTCCCGGATGCTTTGCCGTCATAGGCGACACCAGTATTGGCGTGGGGCCGATCACGccttcctctctctctcttgtgaaGTGAGGCTCCGTGACCGAAGAGCAGCTCCACTCAAGCATCCAGACCAACCCAGTGGAGAGAGAATCATTACAGAGAGCCGGCAGAGACCATAGCGACCAGCATATCAATCAATCTGAATTTACGCATTGTTAcactttatacacacacacacatatatatacacgtgtaCTTTCACTTGCATGACAGCTGGGGTGTGGGGCagctttaaatgtgtttctgcaGTGTATGTGGAACCAACCTTCATTATGAGCCTGAGTACCAATCCTTAAGAGCAAGAGGATGGAAAAGCTAAATAACTCCAAAAGGATTTGATTTCAGGGGTAAACACAACAGACCCCAGCATGGTTTGATCTTGATTTACTCAGCTAAAGCTTCACTGGCCTTATCTGTGTCACCGCCCGGCTCCCATCGGTACATTACATACGATGCTCAAGACATGGTGTTATATGTGCTCCCCTCCAGGGGTGGCCAgtcctgttcctggagagccgcacCCCCGCAGGTCTCTTTATATCACCAACCCCCGAGTGAACTTTAACGCCTTTAGACTGACGAAGCTCGACAATCAAATCCATTAATCAAAAGTTATGGTTAACGGTTTGGATAAGACCAGCCCCAGGACACACGGTGGCTCTGCGGGACCAGGGTTGTCCAGCCCTGCTCTACACTTGTCCCATTGTGTCTTTTCTCCCTCGCTGCATCTTCCAGCATTACTGACCCTCTGTGCTTCATTCACACCTGATCTCACTGTTTACTTGACCTGAAATAAGCAGGTCCCAGggtgccccctcccccaccaactaattaaaaagaacacaATCCTTGCCTGATTGCAGctcccctgtgtgtctgtcatttGTGTTGTCCTCTGAAGACTAGTAGTGTGACGGTCTTGTGCCAAACCCCTCCCAGTGGAGGTGCCACGAGCTATAAACAGAAGCGTGGAAAAATGCACGTGGGTGCAAACTCCCTGTCCAGTCCTTAGCCGTTGTATGCAGATGCTCTTCTCACCGCACTGTGTGAAATAATGCTGTTCCGGAGAATATGGAGCATTTCCACATGGGCACATTTATCACACCGTGCACTCAAATCACCAGCCAACTCCAGAAAGGCCAGGCTTTCCCCTCCTCCAGTCACCCTAACTCATAGCTTTGTTTTGATGTTATCAATATCATTCCAGCTTTGCTAAAAGGAGCTTTATAGTGACCAGGTATAGGCAAGTGATTACctgacaaaaaacattaaacaaattgtaGATCGTCTCCCTG

Function

GO:

id name namespace
GO:0030168 platelet activation biological_process
GO:0007596 blood coagulation biological_process
GO:0050817 coagulation biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019064 False 1362 mRNA 0.62 13 1862316 1885238
TU38794 False 623 TUCP 0.61 6 1861829 1871379
TU38795 True 1825 lncRNA 0.51 6 1878331 1885551

Neighbor

gene id symbol gene type direction distance location
AMCG00019056 klhl18,LOC107657445,LOC107733883,LOC107701005,LOC107730797 coding upstream 9460 1842788 ~ 1852369 (+)
AMCG00019057 NA coding upstream 30552 1783777 ~ 1831277 (+)
AMCG00019054 NA coding upstream 99733 1761674 ~ 1762096 (+)
AMCG00019051 LOC106568618 coding upstream 103511 1745722 ~ 1758318 (+)
AMCG00019053 nrbp2,nrbp2a coding upstream 121003 1730895 ~ 1740826 (+)
AMCG00019060 NA coding downstream 90039 1975590 ~ 1980497 (+)
AMCG00019063 NA coding downstream 131595 2017146 ~ 2030576 (+)
AMCG00019062 NA coding downstream 145703 2031254 ~ 2034414 (+)
AMCG00019061 NA coding downstream 176166 2061717 ~ 2062756 (+)
AMCG00019068 NA coding downstream 284525 2170076 ~ 2174807 (+)
G30939 NA non-coding upstream 280340 1581271 ~ 1581489 (+)
G30937 NA non-coding upstream 308967 1552644 ~ 1552862 (+)
G30910 NA non-coding upstream 445666 1415951 ~ 1416163 (+)
G30903 NA non-coding upstream 451871 1409471 ~ 1409958 (+)
G30887 NA non-coding upstream 551448 1310106 ~ 1310381 (+)
G30996 NA non-coding downstream 52269 1937820 ~ 1938218 (+)
G30943 NA non-coding downstream 153096 2038647 ~ 2083269 (+)
G31104 NA non-coding downstream 211630 2097181 ~ 2099152 (+)
G31117 NA non-coding downstream 291597 2177148 ~ 2177356 (+)
G31141 NA non-coding downstream 303417 2188968 ~ 2209189 (+)
AMCG00019046 NA other upstream 256284 1585825 ~ 1605545 (+)
AMCG00019033 NA other upstream 540336 1318622 ~ 1321493 (+)
G30877 arhgap39,LOC106560380,LOC106584197 other upstream 608094 1253366 ~ 1253735 (+)
AMCG00019030 NA other upstream 624192 1213676 ~ 1237637 (+)
AMCG00019029 NA other upstream 662734 1197986 ~ 1199095 (+)
G31110 NA other downstream 256279 2141830 ~ 2147563 (+)
AMCG00019089 NA other downstream 634553 2520104 ~ 2618052 (+)
AMCG00019096 LOC107727496 other downstream 1208901 3094452 ~ 3100171 (+)
AMCG00019100 crem,crema,LOC105019435,LOC106578540,LOC108428923,LOC103396770 other downstream 1305061 3190612 ~ 3210890 (+)
AMCG00019111 phlpp1,LOC106599727,LOC103135813,LOC101477421,LOC106925929,LOC102225687,LOC103479552 other downstream 2434045 4319596 ~ 4368203 (+)

Expression


Co-expression Network