AMCG00019073


Basic Information

Item Value
gene id AMCG00019073
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 2208790 ~ 2234517 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019073
ccccccccccccgcacagCCATGAGCAACTCGCAGGTTTCCACAGAGATCCACGACATCGTGGGGTCCGCCATCCACACTCCGGAGGGAGACCCGCTGTCCCCTCGCAGCCCCCGGGAGCATGAAGTAGAGGAGGAGGCCGACCTGAACAAGGCCCTGGGGGTGGAGCGTTTTGAGCACATCCTGCAGCCCACCCCCCGCGTCCCCGACGACCTGCACCGCAGCTACAATGAGGAGGATTTCGAGTacCACCGCCACTCCTCCCACCACATCCACCACCCCCTGTCCACCCATCTGCCCTTGGATGGGCGCAAGAAGAAGAGCGGCAAGAAAAGGAGGGGAGGAGGCCACAGGAGGGCGGCCGGGGGGGACAGCGGCAACACTGGCGCCCCCACCATTGAGGAAGGGGaagaggaggacgaggacgaggaggaggactCCTGCAGCCCCTCCAATGGAGAGCGGCCCACCCCGACCGCTGACAGCGACCTCGAGGCCCTCCCACAGGGCGAGGGGGTGCAGTTTTTCGTTTCAGACGACGATGCCTTCTTACCGGACGCTGCCCACCGGAGGACAGGTGGCCAGGCACCCCCCCGCAAATTGGACATTGTGCCCGTCTCCGCCCTGGAGATTGTGGGCCGCCAGGCTGAGGACGCCACACCTACCGACGAGAGGGACGCAGTGGCGGCACGCGGAGGAGCAGCCCGCTCAGCACcggaggagagaaggaaaggTAGCAGCAGTTCGGTCACCGGCCCGGCGAGTCCCAGCCCGTCCGGCGCCTCCGCCCGGGCCACTCCCTCGAAGACCCAGCCCGGCGCCCGGAACTACGACCTGCAGGAGCGGCGGCGCATCGGCAGCATGACGGGCGCAGAGGAGGCCAAGTACCAGAGGATCCCCACGGACGAGAGCGAGGCACAGACCCTGGCCTCCTCCGACCTGGACGGTATCAAGAGTGAGTGTGGGgaggctgggggaggggggaggggagaagaaaaagatgtgggggagaaagaggggagagggaagggggtTGGAGGGAGAGGACAGAGGGGTCAGGGAGAAAGGTACCAGGGAAGAGGGGATggggagaaggaagaggagcCAGGGAAAGGGAAGGAGAAGGGATGGATGAAAAGGGGGAGagaagttGATGTCCCCGGCGTGCGCAGACACCTGGTCAGGAAGAGCGCCAAGGGACAGGTGGTCCACATCAGCAAGGACCACAAGGAGCCCAGCACCCGCATCCGCAAACTGGACCGCACCCCCCATGAGGTGTTTGTGGAGCTCAACGAGCTGATCATGGACAAGAACCAGGAGATGCAGTGGAAGGAGACGGCCCGCTGGATCAAGTTCGAGGAGGatgtggaggaggagacggagcgCTGGGGCAAACCGCACGTGGCTTCGCTCAGCTTCCGCAGCCTCCTGGAGCTGCGCAAGACCATCGCACAGGGCGCCGTGCTGCTGGACCTGGACCAGAAGACCCTGCCAGGTATCGCCCACCAGGTGGTCGAGCAGATGATCATCTCGGACCAGATCAAGGCGGCTGACCGCGCCAACGTGCTCCGGGCCCTGCTACTCAAACACAGTCACCCGAGCGATGAGAAGGAGCCCATCTTCCCCCGGAACATCTCTGCCGCCAGCCTGGGCTCCCTGCTGGTCCACCATCACAGCGGCAACCACACAGCTGTCCCACCCCCCGCCAGCCGAGCTGGGGCCCCCGAGCCCTCTGTCACGGAGCCACTCATGGGCGGTGGGCCCCGGCACTCGGACCCCGACACCTGGGTCGACATCGAGAAGTTGGAGaaGGAGGCCACCCCGACCCTGGGCATGCATCGCTCCAAGTCCAAACACGAGCTGAAGCTGCTGGAGAAAATCCCAGAGAACGCAGAGGCCACCGTGGTGCTCGTGGGCAGCGTGGACTTCCTGGAGCAGCCCACCATGGCGTTCGTGCGCCTGCTGGAGGCCGTGCAGCTGGAGTCGGTGCTGGAGGTGCCGGTGCCGGTCCGCTTCCTCTTCGTGCTCCTGGGCCCCAGCAGCACCAACATGGACTACCACCAGATCGGCCGCTCCATCTCCACTCTCATGTCTGACAAGCACTTCCACGAGGCGGCCTACCTGGCGGACGATCGGCAGGACCTGCTGAGCGCCATCAACGCCTTCCTGGACTGCAGCATCGTGCTGCCGCCCTCGGAGCTGAGCGGCGAGGAGCTGCTGCGCTCGGTGGCGCGCTTCCAGAGGGAGATGCTGCGGAAAAGGGAGGAGCAGGAAGGCAAGCTGCTCACCAAGGAGCCGCAGAGCCCAGAGGAGAAGGAGTCTCTACTCACCCCCTTCAAGCCGGGCGACGACCCCCTGCAGCGCACTGGCCGGCTGTTCGGGGGGCTGATCCGGGACGCGCGGCGCCGCTACCCCCTGTACCTCAGTGACATCCGCGACGCGCTGAACGCCCAGTGCATGGCCGCCGTCATCTTCATCTACTTCGCCGCCCTCTCGCCCGCCATCACCTTCGGGGGCCTGCTAGGGGAGAAGACGGAGGGTCTGATCGGCGTGTCTGAGCTCATCGTGGCCACATCCTTGCAGGGGGTGGTATTCTACCTGCTGGGGGCCCAGCCACTGCTGGTGGTGGGCTTCTCTGGGCCGCTGCTGGTGTTTGAGGAGGCCTTCTACTCTTTCTGCACTTCGAACGAGATGGAGTACCTGACGGGCCGCGTGTGGATCGGCTTCTGGCTGGTTCTGATCGCGCTCATCATCGTGGCCTTCGAGGGCAGCTTCCTGGTGCGCTTCGTCTCGCGCTTCACGCAGGAGATCTTCGCTTTCCTCATCTCCCTCATCTTCATCTACGAGACCTTCTCCAAACTGGTCAAGATCTTCCAGGAACACCCCCTGCAGCGCTGCTCCCTGGACAACAGCACAGCGGAGAATGGCACGGTGGGGCCGGTGTGGGGGGGCGGGATGGGATTGAACAGCACGGAACCCCCCCCCACGGCCAAGGTGACGGGCGAGCCCAACACGGCACTGCTGTCGCTGGTGCTGATGTCCGGGACCTTCTTCATCGCCTTCTATCTGCGCAAGTTCAAGAACAGCGCCTTCTTCCCTGGCAGGATCCGCAGGATTATCGGAGACTTTGGCGTCCCCATCGCCATTCTGATCATGGTGCTGGTGGACTACAGCATCAGGGACACCTACACGCAGAAGCTGAGCGTGCCCAGTGGCTTCTCAGTCACCAGCCCCAAGAAGCGCGACTGGTTCATCAACCCGATGGGCTCACAGGGCCAGTTCCCCATCTGGATGATGGTGGCCAGTATCCTGCCGGCCATCCTGAAAGAGAGGATGCTGGTCAAGGGCTCTGGCTTCCACCTGGACCTGCTGATCATCGTGGCGGCGGGGGGCCTGTCCGCCCTGTTCGGCCTGCCTTGGCTGGCGGCCACCACGGTGCGCTCGGTCACCCACACCAACGCCCTGACCGTCATGAGCAAGGCTGTGGCGCCCGGAGACAAGCCCCGCATCCAGGAGGTCAAGGAGCAGAGGGTCACTGGGCTGCTGGTGGCCATCTTCGTGgGTATGTCCATCGTGATCGGGGACCTGCTGCGGAAGATCCCCCTGGCCGTGCTGTTCGGGATCTTCCTTTACATGGGCGTGATGTCCCTCAACGGCATCCAGCTGTACGACCGCATCCTGCTGCTGCTCATGCCGCCCAAGTACCACCCTGACGAGAGCTTCGTGCGCAAGGTGCGCACGCTGCGGATGCACCTGTTCACGGCCGTGCAGGTGGTGTGCCTGGCGGTGCTGTGGGCGGTCATGTCCACCGTGGCCTCCCTGGCCTTCCCCTTCGTCCTCATCCTCACCGTGCCGGTCAAGATGTTCCTGCTGCCGCGCATCTTCTCCGCCCGCGAGATGCAGTGTGTGAGTGACCCGGAGAgggggagcgagggagggaaAAGAGGGCAGGAGGGAGTGGAAAaggtgCTCGACGCAGACGAGGCGGAGCCCACGTTCGACGAGAAGGAGGGCCAGGACGAGTACAACGAGATGCCCATGCCAGTCTGAGCTGGCTCGCCCACCCACGACCCAGGCACTCACCTGCCAGTGGCTACGCCGGCCTGCCAGTCACCCAGCACGGCCAATCAGAGATGGGCACCGGGGATCCGCCTTCCCGGGAAACGCCCTCTTTCAcctctgtacattttttttttttttgtaaatgcatcatattattattatcattattattgttattattattattattattattattattattattattgtttgactCTGATCTTTTGCAAAAAATGattagtaatatatattttttttccttttttttttttgtctatcaGCTGATTcgttaattcaattaatt

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006820 anion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005452 inorganic anion exchanger activity molecular_function

KEGG:

id description
K13855 SLC4A2, AE2; solute carrier family 4 (anion exchanger), member 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019073 True 4368 mRNA 0.63 22 2208790 2234517

Neighbor

gene id symbol gene type direction distance location
AMCG00019074 ubtfl,LOC107718032 coding downstream 4938 2191396 ~ 2203852 (-)
AMCG00019071 NA coding downstream 66837 2140521 ~ 2141953 (-)
AMCG00019069 NA coding downstream 109981 2096984 ~ 2098809 (-)
AMCG00019070 NA coding downstream 159706 2038699 ~ 2049084 (-)
AMCG00019065 NA coding downstream 178556 2020365 ~ 2030234 (-)
AMCG00019078 NA coding upstream 56983 2291500 ~ 2298668 (-)
AMCG00019080 NA coding upstream 69353 2303870 ~ 2312400 (-)
AMCG00019079 NA coding upstream 108081 2342598 ~ 2357855 (-)
AMCG00019077 abcf2 coding upstream 146020 2380537 ~ 2387149 (-)
AMCG00019084 smarcd3,LOC106578675 coding upstream 175423 2409940 ~ 2434075 (-)
G31137 NA non-coding downstream 31824 2176162 ~ 2176966 (-)
G31021 NA non-coding downstream 146829 1975704 ~ 2061961 (-)
G31074 NA non-coding downstream 327607 1870371 ~ 1881183 (-)
G31075 NA non-coding downstream 334442 1872745 ~ 1874348 (-)
G31064 klhl18,LOC107657445 non-coding downstream 357197 1849538 ~ 1851593 (-)
G31218 NA non-coding upstream 169897 2404414 ~ 2409880 (-)
G31234 NA non-coding upstream 240167 2474684 ~ 2474983 (-)
G31236 NA non-coding upstream 245421 2479938 ~ 2480415 (-)
G31244 NA non-coding upstream 259320 2493837 ~ 2494055 (-)
G31245 NA non-coding upstream 260199 2494716 ~ 2496567 (-)
G31130 NA other downstream 30140 2177980 ~ 2178650 (-)
G31082 NA other downstream 125519 1932341 ~ 2083271 (-)
AMCG00019059 NA other downstream 312358 1882454 ~ 1896432 (-)
G31035 NA other downstream 498247 1705899 ~ 1710543 (-)
AMCG00019034 NA other downstream 885194 1321614 ~ 1323596 (-)
AMCG00019109 NA other upstream 1985926 4220443 ~ 4229991 (-)
AMCG00019129 NA other upstream 2697832 4932349 ~ 4940667 (-)
AMCG00019128 gorasp1,LOC103377203 other upstream 2706542 4941059 ~ 4986384 (-)
AMCG00019165 NA other upstream 4446108 6680625 ~ 6684301 (-)
AMCG00019209 LOC106600477 other upstream 6612634 8847151 ~ 8901878 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000082_03793674_03817588 SLC4A2B, SLC4A2 coding CI01000082 null 3793348 ~ 3817588 (-)