AMCG00019074 (ubtfl,LOC107718032)


Basic Information

Item Value
gene id AMCG00019074
gene name ubtfl,LOC107718032
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 2191396 ~ 2203852 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019074
CCGCGCTTTGATCCAGCCTCGCAAACacgtgtattttcatttaaaaacgataaaaagaaaataaccgAGCAGCGCTACACACTTATTCGCCCCCAGCCTCCGCCTTTGTCTCAGGCAGGGTGGGTTTTTTTTCTCGCCTGTTTTCCTTCGGAGTTCCTCCCCCTGCGGCGCTGGGCGGAGTTTCATACCGGACCAGACGCTCCTTTTGTCGGATCCGTTTCGTCCTGACTCCCCGGGGTTTACTGCTGAAAAAAAGACCCGACAAAAGCCCAAATCCAACCCAACACGACACCAAATCCGATTAAAAGCGTCGCCGATTCATTGCGGTGGAGGAAGAGCTGTCGAGGCCCAGCCAGTCCAGGAGGAGCCGCCCACGCGCTTCTCCGCCATGAACGGCAGCAGCAGCCTCTCCAGTGCGGCCCAGGCCGAGCGCCTCACCACCGTGGCAGACGGGGACGAGTGGACGAAAGAGGACTGCCTGACCCTGCTGGAGAGGATCCGCGGCCTGCTGCCCGACGGAGACGCCATGAAGTACAAGACCACAGAGTCGCACTTTGACTGGGAGAAGGTTGGCTTCGGGGCTTTCACCGGGGACATGTGCAAGCGCAAGTGGCAGAAAGTGTCCAACGAGGTGAGGAAGTACCGCACCATGACTGAGCTGATAATGGACGCCATCGAGTACGTGAAGAACCCCTATAAGGGCAAGAAACTCAAGACGCACCCGGACTTCCCCAAGAAGCCCCTGACCCCCTACTTCCGCTTCTTCATGGAGAAACGTGCCAAGTATGCCAAGATACACCCGGAGATGAGCAACCTGGACCTCACCAAGATCCTGTCCAAGAAGTACAAAGAGCTGCCAGAGAAAAAGAAGCTCAAGTACATCCAGGAGTTTCAGCGAGAGAAGGAGTCCTTCGACAAGAACATGGCCCGCTTCAAGGAGGATCAcccggagctcatggaggagaggaagaagtcaGACCTGCCAGAGAAACCCAAGACGCCCCAGCAGCTCTGGTACAACCACGAGAAGAAGACCTACATGAAGCTGCACCCAGACGTCAGCCAGAAGGAGCTGAAGGAGGCCCTGCGCCGACAGTGGTCTCAGCTCTCCGACAAGAAGCGCCTCAAGTGGATCAGTAAGGCGCTGGAGCTGCAGAAGGACTACGAGGGCACTATGAGAGTGTACCACGAGACGCACCCCGACGCCAACCCAGACGAGCACACGAAGTCCGTCCTGACCAAGGCAGAGCGCCAACTCAAAGACAAGTTCGACGGACGGCCAACCAAACCCCCTCCGAATGGCTACTCCCTGTACTGCGCCGAGCTGATGGTCAACATGAAGGACGTGCCGAGCACTGAGCGCATGGTGCTGTGCAGCAAGCAGTGGAAGATGATGACCCAGAAGGAGAAGGACATGTTCCAGAAGCGCTGCGAGCAGAAAAAGAAGCAGTATGAGATGGATCTGCAGAGGTTcctggagAGCCTGCCGGAGGAGGAGCGCGACCGCGTGCTGACGGAGGAGAAGCTGGGGGGCTCTCGACTGGGCATGGGCGCCACGGGCAGCCCCCTCAGGGCCAAGTCCCCCTCAGCCAAGGAGAGATTGCGGGAGGCCGACCGCCCGCTTGACCAGCGGCTGCACACCCCGCCCAAGGAGAAGCGCGACAGCAAGAGGAAGACGCGGCTGCCAGAGACGCCCAAGACCGCCGAGGAGATGTGGCAGCAGAGTGTGATCGGGGACTACCTGACCAAGTACAGGAACGACCGGAAGAAGGCGCAGAATGCCATGGAGTCCACCTGGAGGGCCatggagaagaaggagaagatcCCCTGGATTAAGAAGGCTGCAGAGGACCAGAAGAGATATGAGAGGGAGCTGGTGGAGATGAGGACCCCACCGTCTGCCCAGGCCCAGAGGAAGCCCAAGTTTGATGGGGAACCCAAGAAACCCCCCGTGAGCGGCTACCAGATGTTCTCCCAGGAGCTGCTGACCAATGGTGAGCTCAACCACTTCAGCCTGAAGGAGCGCATGGTGGAGATTGGCAAGCGGTGGCACAAGCTGAGCCAGGGCCAGAAGGACAAGTACAAGAAGCTGGTGGAGGAGCATCAGATCGAGTACAAGGCCGAGCTGGAGGCCTGGGTGAAGTCCCTGTCTCCTCAGGAGCGCGCCGTCTACAAAGAGTTCTCCACTGTGaagCGACGCAGCTCGGTGAAGGCGGGTGGCCCCGGGGCAAAGGTGCAAGTGACGGGAAAGGGGAAGGCGGTAGGTGCGACTGCCGGAGGACTGGGGGCCGGGGGGGGGCAAGAAGCGATGGCGTACAGGGCACAGGACACCTCGGactctgaggaggaggaggaggagaagacagACTCCTCAGActcagaggaagaggaggatgaggaagagTCCTCAGGCAGCTCGGACAGCGAGGACGAGGAGAACGACGACGAGGAGGACGAGGAAGACGAGGAGGGCGAAGATGACGAGGACCAAtcagagggcagcagcagctcaTCCACAGAAGAGACCAGCGACTCGGACTCGGACTAGCCCCGCCCACTGCGGAGGGTGGGGGGCTTGCAGGACACGCccactcccctccctctccatgGCTGTGGGGGGAGGAGCCTTTCAGAAAGTGAACTCGCCCCCAGAAGGGCCACCCAGCCAACTGGAGCACCTGACGGACTGAGGCCTGGGGTCGCGACCCCCAGGGACTTTTACTCACTCAATGACCTTTTAAAGGAGTGGTGttacatgtgtttattatgattttttttaattattactaccTTTCTATAGGTGTGTTACTGAAGATATGTTgcgtgttcattttttttttttttggaatacaaatgaaactaaa

Function

symbol description
ubtfl Predicted to enable DNA binding activity. Predicted to be located in nucleus. Is expressed in adaxial cell; cephalic musculature; hypaxial myotome region; myotome; and pectoral fin musculature. Orthologous to human UBTF (upstream binding transcription factor).

NR:

description
PREDICTED: nucleolar transcription factor 1-B-like isoform X4

GO:

id name namespace
GO:0003682 chromatin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019074 True 2864 mRNA 0.58 20 2191396 2203852

Neighbor

gene id symbol gene type direction distance location
AMCG00019071 NA coding downstream 49443 2140521 ~ 2141953 (-)
AMCG00019069 NA coding downstream 92587 2096984 ~ 2098809 (-)
AMCG00019070 NA coding downstream 142312 2038699 ~ 2049084 (-)
AMCG00019065 NA coding downstream 161162 2020365 ~ 2030234 (-)
AMCG00019066 NA coding downstream 180239 1986105 ~ 2011157 (-)
AMCG00019073 NA coding upstream 4938 2208790 ~ 2234517 (-)
AMCG00019078 NA coding upstream 87648 2291500 ~ 2298668 (-)
AMCG00019080 NA coding upstream 100018 2303870 ~ 2312400 (-)
AMCG00019079 NA coding upstream 138746 2342598 ~ 2357855 (-)
AMCG00019077 abcf2 coding upstream 176685 2380537 ~ 2387149 (-)
G31137 NA non-coding downstream 14430 2176162 ~ 2176966 (-)
G31021 NA non-coding downstream 129435 1975704 ~ 2061961 (-)
G31074 NA non-coding downstream 310213 1870371 ~ 1881183 (-)
G31075 NA non-coding downstream 317048 1872745 ~ 1874348 (-)
G31064 klhl18,LOC107657445 non-coding downstream 339803 1849538 ~ 1851593 (-)
G31218 NA non-coding upstream 200562 2404414 ~ 2409880 (-)
G31234 NA non-coding upstream 270832 2474684 ~ 2474983 (-)
G31236 NA non-coding upstream 276086 2479938 ~ 2480415 (-)
G31244 NA non-coding upstream 289985 2493837 ~ 2494055 (-)
G31245 NA non-coding upstream 290864 2494716 ~ 2496567 (-)
G31130 NA other downstream 12746 2177980 ~ 2178650 (-)
G31082 NA other downstream 108125 1932341 ~ 2083271 (-)
AMCG00019059 NA other downstream 294964 1882454 ~ 1896432 (-)
G31035 NA other downstream 480853 1705899 ~ 1710543 (-)
AMCG00019034 NA other downstream 867800 1321614 ~ 1323596 (-)
AMCG00019109 NA other upstream 2016591 4220443 ~ 4229991 (-)
AMCG00019129 NA other upstream 2728497 4932349 ~ 4940667 (-)
AMCG00019128 gorasp1,LOC103377203 other upstream 2737207 4941059 ~ 4986384 (-)
AMCG00019165 NA other upstream 4476773 6680625 ~ 6684301 (-)
AMCG00019209 LOC106600477 other upstream 6643299 8847151 ~ 8901878 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000034_03890532_03897571 UBTF coding CI01000034 null 3890438 ~ 3899195 (+)
mexican tetra (Astyanax mexicanus) G140481 ubtfl,LOC108267581,LOC108437253 non-coding NC_035912.1 CM008315.1 10531169 ~ 10552536 (-)