AMCG00019086


Basic Information

Item Value
gene id AMCG00019086
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 2491498 ~ 2501639 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019086
GACGGAAAGTGTGCGGAGACCCTGACAGCGACGCACACCGCGCTGGTTGTCTGAAGCCCTGGCGACACAGCAGCAGCTGGGGTTGTTTTCCATCCCAAAGCGAGTGCATTTCCTGCTTCCCATGTCAGCAGTGAAAGTGCATTTCCTGTGAACCGTCTCGAATGTGCAGAACTAATGGCGGATCGCGTTTGCAGCTCCGTGTAGAGGGGAGCCAGCAGCGTCGCCGTATCGCGCCCGGACGAGCGGCCAGTGAGGGCAAGGGTCTCTGTGTTGAAGAATCTGGATCCTCATGAACACTGCAATGGTACGCGTCTGGAGTCCGGATCGCCGTACGGTTTTCACGAGAAGATGTCCAATGGGAGTTTCTCTTTCAGCCACTACAAGCCACAGATCAACTTGAAGAAGGCAAGGATGGACACACAGTTGCTTCCCCCCGCCTCGCTGAGTGGCCTCAGGGGCTCGGCCTCCACCCTGGACCCAGCACTGCTCTACAACCGCTGGTCCGTGTTCACCGATGACGCCAAGCCCTACGCTGCCTTTCCAGATGGTGGTCGACCCAGGAATTCGTCCTCCAAGTTGTTCCCCTCGTGGCCGGCGGAGAGCGATGGTTACGCGCACCACCCGGAGAAGACCAAGCTCGGGAGAAACGGCTCCTCGGATTTCTCGGACGTGAACGGCTTCTATCAAGACCGCGTGCAGAAGATGCCGGAGAACCACACGGAGAGCCTGTATCAGGGTTTCCAGGGCCTCAGCCTCGTGGACTCCTGGCTCTGTGACGGCAAGAAGGAGCCCGACGGCCCCGCTGGCCCTCAGTCCTCTCGCTTTGCGAAGTGCTCCTACGCCGAGGAGCCCGTGTACAAGGGCAATTCTTTCGTGCACCGGGAGGACTTCGGCTGTGGCGAGAAGGGGTTCGACCCGTGCCGGCGGGAGTGCGGGAAGGAGAGCCTGCAGGCCGGCGGCTATGAGAAAGGGCTGGGGGATTTCAGCGCATTCGCGTCTCCCAACCGCAGCAATGGCAGCAACGGGCGGATGCAGTTCAGAGCGGAGCAGGGCCGAGAGAAGTTCTCCGGTCAGGGTGGGCCCGCGGATCCCGGAGGCTTCTGCGCGGATCTGAGCGGCCCGTCCGCCGGGGACAGCTGGGCGCAGGTGCCGCCGCGGAGGCAACACTCCTTCCAGGGGTACGAGGACTATAACTCCCCCTTGTCTCTGAAGAAGTCCTTCCCCCCACCTCGGCACTACTTCGGTCAGCAGCGCAGCAAGCTGAGCGGGGGCAGGAGCTGGCAGCCGCCTCCCGATCTCAACCTTGGCGCTCAAGATGCGTATCTTCCCTCGCGGAAACCCAGCGATCAGGTCCTGCCCGGGGCATTGGATCTGCCTTCTGACTTTGCCCGGGCCATGAGTGCCATGCTCCAGAATGGGGACTACCCGCAGCCAGCGAAGAAcgggcccgtgtggtctgacgGGGGTATGCTGAGCCCATCGGGGAAGCCGGCCTCGCGGTACGGGGGGCAGAAGAGCTCGGTGGGCAGCCTGCAGGTTTCCCTCTCGGGTGTGCCCAACCTCTCGAGTGAAAACCCCGTCGGCCTTTTCCACCCACCGCCGTATTCCTCGCAGACGTCCCCGGTGTCTCCAGGTGGGAAAACGGAACGGAGGGGCAAACCGGGAGAGATCCGCCCTGGGTGCTGGCCAGGAAACGCAGGGTCCGAACACACGAATCAGAGCCCGCCTGGCGGCCACTCCAGACTAGACCCGGCAGCGACCAAAGAGCACCCGTATGGCAACCAGTCCGGCTTTCCCAGCAACTGGGGGCCCCCGCCGGCCCAGACTTCTCCGGGGGAAGAGCCAGACCGAGGCTACCCGCACCGTGGCCGGCCCTGCTGGGAGAGCCGCGATGACAGGAAGGCTGCGAGGAAgaacaaccacaaccacaacaataacaaccacTGGTTCCCTCCGCCCCAGTATGGAGGCCCCGGCCGCCAACAGTACAACAGCTACCGCAGGAAGCAGGACCCGGATGGGGGCCACGTGTCCGACTATGTCaactcccagttcctgccgcccTTCCCCCTCGGGATGTCGGACCTGAAGCGGAGCCACGGCTTCTCCCAGTTCAGCCCCCACAGCGGCAGCGGGGGGGGCGGCGGGGGCGGCGGGGGTGGTTTCCCGTTCCCCCCCTCCGGGTTCCCCTTCCCTGACCTCATGGACCTCCTGCAGTATGAGGACTTTGGCCGCCTGAGCCCCTTCGTTGGTGAGGTGTTCTGTGGAGACGTGCCCCCCCCCTATTTCGGCTTCCCTCCCCCTTTCAACAAGTACCGGCCCATGAGGAACCGCAGCGGCCCGGCCAACGAGCTGCACACGCAGTTGGAGGTGTGCTACGAGCAGTGGAGGGCGCTGGAGAAGGAGCGCAAGAAGACTGAGGCGGACCTGGCACGAAACTTTCCGGGAAAACGGGTGTCCAGCTCGAACAACACTCCCATCCCTCGCCTGCCAGCCAACCCCTCCCGAGTGCTAACGCTGATCGGGAAGATGGAACGCCTGCGCGGTGCCCCCGTCCACGCCAACATATCGACCACTCTGGAGCGGCACTTCGAGTTCATCCAGGTCACCCAGGCACGCCGCAAGGACGAGATCGTGAACGCGGCCAACCGGCAGAGGCAGGGGGCCCCGCGGTATAACGACGACAAAGATGTCCTGGCCCTCGCGGCGGCCATCAAGGAGCTGGGCGGGATCACCCGTAAAGCCCGCACAGCCCTGTGGTGCGCCCTGCAGATGACCCTGCCCAAGAGTAGCGTGGGGGCGCCAGCCAGGCAGGCGGAGCTGGAGAGGGCGCTGCGGGAGCTGTGCAACCCCGTCGAGGGAGAGGTGCAGGGCCGGGGGGGCGACGAGACGCCCCTGAGAGCTTTGCTGCAGCCGGAGAGAACGGAGGAGGAGCGTCCGGGGCCAGGCAGGGAGGGCCAGGGAGAGCAGGATTCCAGGGTGTCCGGCGAGTGACACCTGTGGGCTTGGGATCTGGCGGTGCATCATGGGAAATCTCCTGGTTATCTAGAACAAtcgtaaacacacacacacaaggaggAGGTGAGAGGTGGGAGGTGCATGTCGTGCCTCCTGGTGTGAAAGGGTCTTTGGGAGACGCCTGTCCTGCAGCTCGAGGTACAGACGTCGTGCCGTCGCTCCGCCAGGTCCACTCCGTGTCGCACAATTGGTGTCTCCGTTTCCTGTCCGTCTCTGTGTTCGCTCcgtttacaatttacaatagttctttatgttctttttcttcccccaagGTGCTATTATGGGGAGGTTAGGGCGTGCTCCTTACTGCTGAATCACCTGCTGTAAGGACCGCTCTTAACATGGTCAGTTATCTTCACCTTCTCCAGTAGTTCATACTTCCATGGTGTCTAttgtagattgttttttttctctaaacagCAGAAGTGActaataactaaaaataacaaGTCGGTGTAACTCCTGTAGCGATCGTGGTTGGGGGTGGGATCGCAGTTCTGTCAGTTGCTCTGGAGCGGGTCATGGGTTCAACTCTCTTTACTTTCCTTCTATATACGTTTCTTAGCAAGTCTTCTTCCGCAGTGTTAAAAAGCGAGGGATGGAGGCCGGCAGTTAGATCGCTGCTAGCCTCCGCGAGTTCCCCTACATCCAAAGACCGCGCCGTACTGTAGGGTGCAGTTCTCCATGCTCAGCCCACCGTCAAGTGCCAAAAACAAGGTGTCTGCAATCTCTCGTACCCTGAATGTTACTCCTGATCACATTTCAGtagtttgttgtgttgttgttgtttactaaatgcatttatattcatGTTGCACTTTTCTGTAGCCTGTTAGTCCTTCCAAGCAACTGCAGAACTGTTTTCCTCTCCCGATCTTTTGGGTGTATTAAGTGACATTTCCCATGATGCAGTGGGCTAAGTTGCAGGTAGCCTTTGTTCAGTGCGAATGTCTCGACTACAGAAGAGCTTTTAAAGCCGTAGCAGAAGATCGATACCGAGttgtttgaattgtatttttattgactTACACGTGGTATTACTTTAAATGTTAGAAGAGCTGTTTCTCAGGATTAGTATTTTGACATACTAACACCTTTTGGTGGCTAAATATAAGTAAATCTGAACTTAGTATGCacttaaatctatattttatgacattaagggaattataattttc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019086 True 4196 mRNA 0.59 7 2491498 2501639

Neighbor

gene id symbol gene type direction distance location
AMCG00019083 NA coding upstream 2510 2487342 ~ 2488988 (+)
AMCG00019082 chpf2,LOC106590171 coding upstream 89369 2391707 ~ 2402129 (+)
AMCG00019081 abcf2,LOC106590172 coding upstream 113124 2375995 ~ 2378374 (+)
AMCG00019076 NA coding upstream 122256 2365606 ~ 2369242 (+)
AMCG00019075 NA coding upstream 199827 2280642 ~ 2291671 (+)
AMCG00019090 NA coding downstream 117596 2619235 ~ 2636403 (+)
AMCG00019088 NA coding downstream 156914 2658553 ~ 2665864 (+)
AMCG00019095 wnt9a,LOC106599874 coding downstream 343741 2845380 ~ 2850000 (+)
AMCG00019101 ccny,LOC107739127,LOC107588043,LOC108431590 coding downstream 756022 3257661 ~ 3275357 (+)
AMCG00019099 NA coding downstream 780521 3282160 ~ 3285119 (+)
G31217 NA non-coding upstream 81611 2404126 ~ 2409887 (+)
G31141 NA non-coding upstream 282309 2188968 ~ 2209189 (+)
G31143 NA non-coding upstream 299290 2191421 ~ 2192208 (+)
G31117 NA non-coding upstream 314142 2177148 ~ 2177356 (+)
G31104 NA non-coding upstream 392346 2097181 ~ 2099152 (+)
G31351 NA non-coding downstream 575277 3076916 ~ 3077156 (+)
G31380 NA non-coding downstream 638048 3139687 ~ 3165672 (+)
G31430 NA non-coding downstream 843116 3344755 ~ 3345244 (+)
G31432 NA non-coding downstream 851701 3353340 ~ 3388685 (+)
G31461 NA non-coding downstream 1362550 3864189 ~ 3864604 (+)
G31110 NA other upstream 343935 2141830 ~ 2147563 (+)
AMCG00019064 NA other upstream 605947 1861829 ~ 1885551 (+)
AMCG00019046 NA other upstream 885953 1585825 ~ 1605545 (+)
AMCG00019033 NA other upstream 1170005 1318622 ~ 1321493 (+)
G30877 arhgap39,LOC106560380,LOC106584197 other upstream 1237763 1253366 ~ 1253735 (+)
AMCG00019089 NA other downstream 18465 2520104 ~ 2618052 (+)
AMCG00019096 LOC107727496 other downstream 592813 3094452 ~ 3100171 (+)
AMCG00019100 crem,crema,LOC105019435,LOC106578540,LOC108428923,LOC103396770 other downstream 688973 3190612 ~ 3210890 (+)
AMCG00019111 phlpp1,LOC106599727,LOC103135813,LOC101477421,LOC106925929,LOC102225687,LOC103479552 other downstream 1817957 4319596 ~ 4368203 (+)
AMCG00019154 ghrhrb,LOC107704523,LOC106560417,LOC107717144,LOC107556991 other downstream 3429065 5930704 ~ 5939597 (+)

Expression


Co-expression Network