AMCG00019088


Basic Information

Item Value
gene id AMCG00019088
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 2658553 ~ 2665864 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019088
GCAGATTAACCCCTGAGCCGCGGATCCCGCACAGCGACACTCAGCACCGGCGCAGACGGGGGGGCGGGATACCACGGCCGTACAGGAAATAAGCCGCTTTTACTTTAAACTCTCTCCTATGCCCAGTGCGTGTTTGTTGGTTTCATACCAGTAAACCCACAATCCTTTCTTGTCGTTTCTGCATCGCGGTCCGCACCACGGCAGCGTTACCCGGCGGGCGCTCGCCTCTCTGAGTGAAGCCACCCGGGGCACGCTGCTCAGGAAAGTCCCCGGATTGGACAGGCCGCGCAGCGAAACGCACATGTGGCACAAGGGCTCGTTTTCATAACAACTTTGActcagttttgttatttgtttaccGGTGAGCAAAACATGTTCGGCTCTTCGCGGTCGGGCGGCGTGAGGGGCGGCCAGGACCAGTTCAACTGGGATGACGTGAAGGGCGACAAGCACCGAGAAAACTACCTGGGGGATGCCGCCCGCTGCTGCGCTGCGCCTGAACCCGGGGCACCAGGCTGCCAGTTACAGGCAAAGGGCCGCGACCTGAGCTGGTACGCCAAGGATAAGAAGAGCGGAGCGGCGCAGTCGCGGGAGGAGGAGCTGGCGGCCGTGCGGCAGGCGGAGCAGGAGGCTCTGATGTCGGCCCTGGGCTACAAGAATGTGAAAAGACAACCTACCGGCCTTACCAAAGAGGACCTGGCTGACGTTTGCCGCAGGGAGGGGGCTGAGCGAGACGTTCGGGACGTGGACAGGGTCTCTGGACTGGGGAGCTCCAGCTCCGGTGCCAGTAAAGTCATGCTGTCCAAACAAGACAAGGAAGCTGCAAAGATGGGCCTAGCGGTTTTCACACATCACAAAGTGCAAGGCCAGCAAGAGGCCTCCGCCCAcaagggggagacagagagcagagaggacAACACGCAGAGCCAGAGGACGGagagcaaaaagaaaatgaaaaaggaaaagaagagcaaaaaggagaaaaagaagaagaaagataaaaagaagACGAAAAAACACCACAAGAGACGGTCGTCTTCCTCGGAGTCGGAATCGGAGGATGACGGCAGAAGGAGCAGAGAGGCTGCTCATCCATCATGCGGGCGTCAGAGCGGTGCCGGCCGCCGTGACAGCTATTCTTCGGGGGAGGCGGGGGCCGAGCGGCACGGCCCCCCCCGCGGCAGGCAGCAGCGCCACGACAGGGACTCCTCCTTgggctgcccccccccccaccaccaccaccaccaccaccaccaccgcgACAGCCGGCATCCAGCCCGGTCCCCTCCCGCACACGGCCACAAGCGCCGCCACGACACCGACTCGGACGATtga

Function

GO:

id name namespace
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006260 DNA replication biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0006269 DNA replication, synthesis of RNA primer biological_process
GO:0046483 heterocycle metabolic process biological_process

KEGG:

id description
ko03440 Homologous recombination
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019088 True 1335 mRNA 0.61 9 2658553 2665864

Neighbor

gene id symbol gene type direction distance location
AMCG00019090 NA coding upstream 22150 2619235 ~ 2636403 (+)
AMCG00019086 NA coding upstream 156914 2491498 ~ 2501639 (+)
AMCG00019083 NA coding upstream 169565 2487342 ~ 2488988 (+)
AMCG00019082 chpf2,LOC106590171 coding upstream 256424 2391707 ~ 2402129 (+)
AMCG00019081 abcf2,LOC106590172 coding upstream 280179 2375995 ~ 2378374 (+)
AMCG00019095 wnt9a,LOC106599874 coding downstream 179516 2845380 ~ 2850000 (+)
AMCG00019101 ccny,LOC107739127,LOC107588043,LOC108431590 coding downstream 591797 3257661 ~ 3275357 (+)
AMCG00019099 NA coding downstream 616296 3282160 ~ 3285119 (+)
AMCG00019104 LOC107588097 coding downstream 965871 3631735 ~ 3635688 (+)
AMCG00019107 NA coding downstream 1582529 4248393 ~ 4249743 (+)
G31217 NA non-coding upstream 248666 2404126 ~ 2409887 (+)
G31141 NA non-coding upstream 449364 2188968 ~ 2209189 (+)
G31143 NA non-coding upstream 466345 2191421 ~ 2192208 (+)
G31117 NA non-coding upstream 481197 2177148 ~ 2177356 (+)
G31104 NA non-coding upstream 559401 2097181 ~ 2099152 (+)
G31351 NA non-coding downstream 411052 3076916 ~ 3077156 (+)
G31380 NA non-coding downstream 473823 3139687 ~ 3165672 (+)
G31430 NA non-coding downstream 678891 3344755 ~ 3345244 (+)
G31432 NA non-coding downstream 687476 3353340 ~ 3388685 (+)
G31461 NA non-coding downstream 1198325 3864189 ~ 3864604 (+)
AMCG00019089 NA other upstream 40501 2520104 ~ 2618052 (+)
G31110 NA other upstream 510990 2141830 ~ 2147563 (+)
AMCG00019064 NA other upstream 773002 1861829 ~ 1885551 (+)
AMCG00019046 NA other upstream 1053008 1585825 ~ 1605545 (+)
AMCG00019033 NA other upstream 1337060 1318622 ~ 1321493 (+)
AMCG00019096 LOC107727496 other downstream 428588 3094452 ~ 3100171 (+)
AMCG00019100 crem,crema,LOC105019435,LOC106578540,LOC108428923,LOC103396770 other downstream 524748 3190612 ~ 3210890 (+)
AMCG00019111 phlpp1,LOC106599727,LOC103135813,LOC101477421,LOC106925929,LOC102225687,LOC103479552 other downstream 1653732 4319596 ~ 4368203 (+)
AMCG00019154 ghrhrb,LOC107704523,LOC106560417,LOC107717144,LOC107556991 other downstream 3264840 5930704 ~ 5939597 (+)
G32005 NA other downstream 4754637 7420501 ~ 7421083 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015142 C2H1orf35 coding NC_007113.7 CM002886.2 3044992 ~ 3062793 (+)