AMCG00019090


Basic Information

Item Value
gene id AMCG00019090
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 2619235 ~ 2636403 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019090
AGCAGATTCTGAGAGCTGCAGCACCCCCGACCGAGATCTGGGGCCAGAGGGGGTTTCCAGTGTGCCGGTCAAGAAATGGTATgagatcgagttcagcccgaCCACCTTCCGCAAGAGGAGCTTCACAACAGAAGCATTTGATGTTCCTCCGTGTAGAAGTGAGTACAGGGTAGCAGAGCTCGTCCCAGATGTGCGAGAGGGGGTGTCCTGGGACTTCAGGAGAGAGGTGGAAGTGGAAACCCGGGAGCAGTCCTACTTCTATGTCACTGGAGAGGAGGACACAGAAGGCCCTCCCTACATTCAGGAGACCGTGGAAGACCTCCAGGTCCAGATGGGTGCAGCAGCCACCTTCAGCACGCTCATCACCGGACGCCCTGCCCCAGCCGTCTCCTGGTACAAGGACGGAGAGCTGCTGTCAGCCAGTGAGAGGATCGTCCTGGAGCAGCAGGGAGCCCGGTTCTGCCTCACAGTGGTCCAGGCAGAGACGAGGGACGGCGGCATCTATACCTGCACGGCCAGGAATGCCTGGGGGGAGGCATCCTGCAAGGCTGAGCTCGCCATGGAGAAAGGAGCTGAGGATGATGACCAGGGCCGTGAGAGAGCGCTGGGGAGGAGCGGGCGGCTGCACTCGCTGTACGAGGTCCACGAGGAGATTGGGAGGGGCTGCTTTAGCTACGTGAAGCGAGTGACCCACAAAGGGAGCGGGGAGGCCGCCGCCGCCAAGTTCATCCCCCTGCGGAGGGGCACCAAGACCCAGGCCTTCCAGGAGAGGGCCCTGCTGTCCCAGCTCAGCCACCACAGAGTGGTCTGTCTGCTGGGGGCCTTCTACACGCGGAGGACCCTTGTCCTGGTCACTGATCTATGCTCCAGCCAAGGGCTTCTCGAGCATCTACTGTCACAGGGATCTGTCCCAGAGAGTGAGGTTCGGATGTACATTAAACAAATCTTAGAAGGCCTTGATTATATCCACGGGAGGAACATTCTGCACCTGGACATCAAGCCAGCCAACATCCTCATGGCCCTGCCCGAGAGAGATGGGGTCAAGATCTGTGATTTCGGTTTTGCTCAAGAAATCGACGTGGCCAAACCTCAGTACAGCAGGTTTGGGACCCCCGAGTTCGTGGCCCCCGAGGTCGTGTGCCAAGGCCTGGTTTCCAAGGCAACGGACATCTGGTCCCTTGGTGTCTTGTCTTTCCTGTGTCTGACAGGCGGCTGTCCCTTCTCTGGGGAGAACGACCGTGCCACCTTGCTGAGTGTCCAGGGGGGCCGTGTGGCCTGGGACGCCCCTGACGTCACCTGCAGAAGCGGGGAGTCGCGGGACTTCCTCCAGAGCATCATACAGCTGTCTGCAGAGAAGCGTCCGACTGCTTCCGAGTGCTTGGGGCATAACTGGTTTCAGcTGGATCTCCCAGATGctgaattaatcaatacaaagaAGTTGAAATTCTTTGTATCCAGGAGCAAATGGCAGCGCTCGCTCATGTGCTATGGATCTGTGCTGGCGATGAGGTCCATCGCCGAGCTCCTGGCTGGTGTTCCCAAGGACACCTCTCTGACCATCACCCGGGACCAGCAGGAGCACAGCAGCTCCTCGCCCAGCAGCGCATCCTCTTCTGATTACGAAGACGTCTCCCAGCAAGGAGAGACGCTCTCCTTGGGGGGCCCCGAAGCCCTGGCTGCAACTCGGCAACTGGGCCCTGTGTGGGACTGGCAGGAGAAGGGCACACAAGAAAGTGGAGAAGGGGTACGAGTGGATGCACGTGCAGAGCTTTCCACATCCAGCGCCTCCGCAGGGGTTCTGGGCAAAGGACCAGAGAAGGAGCGTTCTGAGTGGGTCCCGCCGAGACTGGCAGCAGCCGAGCTGGGCAGCATTAGCAGTGAGTTCCGGCTCACGGTTTGTAAAGCGGAGGTGGCAGATACGCCAGACTCCTGGGTGAAGTCAACGGAGACCCCTGGCCGACTGAGTCGTGAGGGCTCTGCAGACAGCTCTGTGTCCTTGTGCGTCTCAGAGGATGAGAGCACCGGCTCGTCCAGCGGGCGCATCCCTCGTGAGAGTGTCATCAAGAGCACGTTCTACAGCAGCTCCTCCGAACTGTCCCCTCTGTCTGCCCGACGTCTCCTGCTACAGGGGAAGAAATTCATGAAGAGGCACGAGAGGACGAGAAAGCACCTGCTGACATCTGGGCTCTCCAGCAGACTGAGAGAGCCCCTCCTGGAACATGCGGAGGACAACCAGAATGAGACGGACGACAGCAGGAACCAGGGGAGTGACCAGCTGGTTATGGCTAAGTCAAGTTCTTTTGATAGTGGAGTCAGAGTCTCCTCTTACGATGTAGCTAAGAAAAGACGGAGCAGGTCCTTGGACGAATACAAGACGAGAACACCAACACCGTCCGATTTGATAGAAGCGGGAGAAGATATTGAAGGACCTGAAGATTTTAGTTCCAAGGATGTTTTGGAAGTTGAAATGCAGATTAAACCTGTAGATATTCTACCTGAAGGAGTAGCAGGGACCACTCAGGAAGAAACAGTAGATGAAGAGGCAGAGCTGGCAGAGGTGGCCTCACTTGAAGTGCTAACCCGAGGGGAAGAGAGAGCGCAACGTTCAGAGGTCACCCCTGAGAAGACCGCAGAGGAAGAGACTTCAGATGAAAGCAAGATGGAAGCTGCCATTCTAGAGTGCATCCTGAGTGAAATGGTTTGCCTCTCTGAAGAAATTAATGTTATCACTGCTTCCAAATCGGCTCCAGAAAGACTTGATATTGCAGGAGCCTCCCCCACAGCAGAGACTGCGATACCTGAGGAATGTTCTCCAACGGTTAGTGATTCACAGTTGTTTGTAGACGAGCCCTTAGAGCTGAAGCCCATATTTGTGGAGTCCACCACACCAATGTCTGCCGTCCAGGAGGTTTCAGAGTTACTAACTTCACAGTATGGTCTTTCGCAGTTTGAGAGACCCCAGAGCTTTCACCTGTCTTTCAAGGCTCTGGAAAGATTagaactggaaaacaaaacccatttcCCAAAGCTGCATATAACAAGATCTGAAAGTGGGATCAGAAAATACAGTGATCCTGCTCTCCCGCCTCTGGGTGCAGAACCAGTGGAAAGTCGTTCTCACAGCGCCACGTGTGAACCTTTCACTTCCGCAGAGCCGTGCGGCTTTGAATTGGCTTCACAGTATTCTTTGACTGAACTGGAGGCTCTGGCTGGTCCAGAAGAGTCTTACTACCACAAGGCAGAGTCACCCCAAGAGCTCTTTCTAGGCCACCGCCCTGAGGAAGAGTATGACCGCCTCGATGTGCACATGCCGGAGGACGCGTCAGCCCAGGCTTCCCCGTATGTTTACCTGGAGGCTTCAGAGGCGGAACTGGAGCCAGAACTTCTGGACCTCCTGGAGGAAGTGCACATGTATGAGAACCTTCAGTTGGCGCAGGCTGAATGGTCTGAAAGCGACATCAGAATCCCGGGTGAGGACACTCCCTTCCCAGTGAAGTCTGCGTCTTCAGTGGAAGTTTCTCGGGGAGAACCACACGAATCCTTCAGGGAGCGAGTGCACCGACCTGCCTCAGCCCCGGAGTCCAAACGCCAGCCCAATAAATCGGGAAAATATGGCCTGTTAAGATTCTTCCGAAAACATGCGTCGACGGACCAACCGTCCACGTCGGCCGTGAAGGCACCGCAGAAGGAAACTCCAGAGGAGAAGTGGGGCGACTCGGCAGCACAGCATCAGCAGCACCAAAGAGCGCCAGATTCAAGCTTAACGAAGAAGGTGAAGGCCTCGGTTTCCAGCATCTCCAAGGCTGTCTGGGGGAGGCAGGCCAGCgagaaagagaagaaggaaGGAGAGACAGCTGCAGGGGATCAGTCCAGTCCCGAGTCCCCGACAGAGTCGAGTTGTGTAACCGCGGGATCTCTGAAGAAGAAGAGTGGTCTGTTCTCCTTCAAACTGCCCAGCTTCAAGAGGAGCAAAGAACCCGTGTTCTTGGAGGAGCTCCCAGACCAGGCGGTGTCCCTAGGCCAGTCGGTCTTGCTGTCCTGTCGGCTCGCGGGACACCCACCCCCTGACGTGCGCTGGTATAAAGaGGGCCGTCAGATCCAGAGCAATGGCCGTATCTGTATGTCGGTGAAGGACAGGGAATCGCACTCTCTCGTCATCAGCTCGGCTCGGGAGGAGGACCTGGGGAGCTACCGCTGCGTGGCCAGCAACGCCCTGGGCCAGGCCTCCAGCTCCTGCACGCTCATCGTGTCGGATCTGCCCACCTGCCCTGCCAGCCCAGAGCCCACTCAGGTGGACGGTAATGGGGTGCTGCTCACATGGAAGCCAGTCGAGTCCATTCAGCCGCTCACCTACAGCATCCAATACAGCATAGACGGAGAGGAGTGGAGTTTGCTGGCGGAAGGGGTGACTGACAGCTGCTACACCGTCAGTGGCCTGCCCAAGGGCTCAGTGTGTGTCTTCAGGGTGGCCTGCGTCAACGGAGCGGGCATGGGACCCTATAGTCACCCCTCCACTGCCACCACCATCGGAGCAGAGCAAGAAGACTCACTCATTCCCCTCATCCATTCTGTTCTCCCCGGGGCGGAAGGGGGCGAAGTCCCAGCACAGTCTCCGTTCCCCTTCTTTCCGATGCACAAGAGCTATACGTTTCTCTCTGAGATCAACAGGGGACGCTTCGGCATCGTCAAACAGTGCCGGGAGGACGTCAGCGGGAAGATGTTCGCTGCCAAGATCATCCCATACAAGGCGGACAAGCGCCAGGGGGTGCTGAGGGAATACCAGGTGCTGAAGAGGCTGCGGCACACCCACCTGGTGCAGCTCCACGCCGCTTTCATCACCCCGCGCTTCCTGGTGCTCGTGGAGGAGCTGGACTCTTACTCGGAGCTGGAGGTGCGCGAGTTCCTGCAGCAGATCCTCAGCGCGGCCGAGTACCTGCACTGCCGCCGGGTCCTGCACCTGGACCTCAAGCCCGACAACATGCTGGTCACCGAGTGCAGCCTGCTCAAGGTGGTGGACTTTGGCTCTGCGCAGACGTTCACGCCTGGGGTGGCCCTCGTGGTGGAGCGGCTCAGGGACCTGACGGAGAACAAAGCCCCGGAGATCCTGGAAGGGCAAGGCGTAGGACCGGAGACAGACGTGTGGAGCATCGGGGGGGTGGCCTTCACCATGCTGAGCGCCGATAACCCCTTCTACTCAGACATGCACTGCGAGAGGGACAGGAACATCAGGAAAGGGAAGATCCAGTTTGGCCGGTGCTACCCTGGCCTCTCAGAGGGTGCGCTCCACTTCGTGAAACAGACTCTGAACCACAAGCCCTGGGTGAGGCCATCAGCCGCCGAGTGCCTTCGCTTACCGTGGATACAGGGCGTCCCCGCCTCTAAGCACCGGCACTCCGTGGTCTATTTCTCCACCGACAAGCTGCAGGGCTACCTGCAGGGCTACGTCCAGGAGCGGGAGAGGAAACGGGCACACCTCCGCACCAAGCTAGAGGTGCCCGTCTTCTTGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019090 True 5509 mRNA 0.58 27 2619235 2636403

Neighbor

gene id symbol gene type direction distance location
AMCG00019086 NA coding upstream 117596 2491498 ~ 2501639 (+)
AMCG00019083 NA coding upstream 130247 2487342 ~ 2488988 (+)
AMCG00019082 chpf2,LOC106590171 coding upstream 217106 2391707 ~ 2402129 (+)
AMCG00019081 abcf2,LOC106590172 coding upstream 240861 2375995 ~ 2378374 (+)
AMCG00019076 NA coding upstream 249993 2365606 ~ 2369242 (+)
AMCG00019088 NA coding downstream 22150 2658553 ~ 2665864 (+)
AMCG00019095 wnt9a,LOC106599874 coding downstream 208977 2845380 ~ 2850000 (+)
AMCG00019101 ccny,LOC107739127,LOC107588043,LOC108431590 coding downstream 621258 3257661 ~ 3275357 (+)
AMCG00019099 NA coding downstream 645757 3282160 ~ 3285119 (+)
AMCG00019104 LOC107588097 coding downstream 995332 3631735 ~ 3635688 (+)
G31217 NA non-coding upstream 209348 2404126 ~ 2409887 (+)
G31141 NA non-coding upstream 410046 2188968 ~ 2209189 (+)
G31143 NA non-coding upstream 427027 2191421 ~ 2192208 (+)
G31117 NA non-coding upstream 441879 2177148 ~ 2177356 (+)
G31104 NA non-coding upstream 520083 2097181 ~ 2099152 (+)
G31351 NA non-coding downstream 440513 3076916 ~ 3077156 (+)
G31380 NA non-coding downstream 503284 3139687 ~ 3165672 (+)
G31430 NA non-coding downstream 708352 3344755 ~ 3345244 (+)
G31432 NA non-coding downstream 716937 3353340 ~ 3388685 (+)
G31461 NA non-coding downstream 1227786 3864189 ~ 3864604 (+)
AMCG00019089 NA other upstream 1183 2520104 ~ 2618052 (+)
G31110 NA other upstream 471672 2141830 ~ 2147563 (+)
AMCG00019064 NA other upstream 733684 1861829 ~ 1885551 (+)
AMCG00019046 NA other upstream 1013690 1585825 ~ 1605545 (+)
AMCG00019033 NA other upstream 1297742 1318622 ~ 1321493 (+)
AMCG00019096 LOC107727496 other downstream 458049 3094452 ~ 3100171 (+)
AMCG00019100 crem,crema,LOC105019435,LOC106578540,LOC108428923,LOC103396770 other downstream 554209 3190612 ~ 3210890 (+)
AMCG00019111 phlpp1,LOC106599727,LOC103135813,LOC101477421,LOC106925929,LOC102225687,LOC103479552 other downstream 1683193 4319596 ~ 4368203 (+)
AMCG00019154 ghrhrb,LOC107704523,LOC106560417,LOC107717144,LOC107556991 other downstream 3294301 5930704 ~ 5939597 (+)
G32005 NA other downstream 4784098 7420501 ~ 7421083 (+)

Expression


Co-expression Network