AMCG00019091 (arf1,arf3,LOC103038497,LOC102781726,LOC107671731)


Basic Information

Item Value
gene id AMCG00019091
gene name arf1,arf3,LOC103038497,LOC102781726,LOC107671731
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 2676315 ~ 2686173 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019091
ATGGATCACTGCACTAACCAGCGCCCCGCTGCACCGATGTCTATGGTCGCGCCGGCCGGCACTGGGGCCGAGGCGGGCGGAGGTGTTGCCAAATTCACCCCCCTGCGCCGCCGCGCTGTCGGAAGATCCGGCGCACTGACGTGGCCGCTGGAAGCCGCCATCTTAGGAAGCGAGAGGAGCACCGCGCTAAGACACAAAGCGGACATTTTCACCAGCGATATTAGCGAGAGTCGAGCCGCTGTGAAGTCCCTCAAGACACCGGATCACGCCGCCGCCGAGCACCGCTCAGCCCGGGAACCAGGAATCGCACGGAGCTCCATTTTTGACGAGATGCGGATCCTCATGGTGGGGCTCGATGCTGCCGGAAAGACCACGATCCTGTACAAACTCAAGCTTGGCGAGATTGTAACCACTATTCCCACAATAGGCTTCAACGTGGAAACTGTAGAATACAAGAATATAAGTTTCACTGTGTGGGACGTAGGCGGTCAGGATAAAATCCGACCTCTATGGCGTCACTACTTCCAGAACACGCAGGGTCTGATCTTCGTGGTGGACAGCAACGACCGGGAGCGCGTGAACGAGGCCCGAGAGGAGCTGATGAGGATGCTGGCAGAGGATGAGCTGAGAGATGCCGTCTTATTAGTATTCGCGAACAAGCAGGACCTGCCCAACGCCATGAACGCGGCGGAAATCACAGACAAGCTGGGACTGCATTCCCTGCGCCACCGGAACTGGTACATCCAGGCCACCTGCGCCACCAGCGGCGACGGGCTCTATGAAGGACTGGACTGGCTGTCCAATCAGCTCCGAACCCAGAAATAactcctctccctctgctcctgcaccccctctcctcctcctcctcctcctcctcctcctcctcctcctctcctcccgctctcctctcctcccgcTTTACTCTCTGATGTGGCAGACCGTGCTACTTTGTGGTCTGGAGTGCTGGCAGCCGTCCTCGTTTCATTTTGTCATGATGTATAATAACGCCACACTATTTTTTAGttgtggggcgggggggcgggggtggggaaCAAGCTGGAAGCCGACTGGTttcttatttaatgtaaatagtCCTTTTGTTGTAATGAGGAAGTTTCTGGCACTCCTATGCAATATTTACtcagccttttcttttcttctctctccccagcCCCCAACCCTCCTTTTCTTCcctcttcttttcatttttctacaAATTTTGACTGTACATGTATGTAGTACTGGATACCAGAAACTCACGAATGCTTATTTACAGGAGTCCGCCGGACCCTGCGGTGGGGCCCCGGGGGTCTCCTCCCTCTCGCCTGCGGTCGGCGTGGGCGgggggttttctttttaatcggATGGTGGTTTTTAATCCGTAGTACTGTACGAGTGGTGCAGCCCGTATGTATCGTCCAACACTTGAAGCAAACGAAGCCAGCGTAAACGCACAGATGCACTACCGCCGGCAGGACGAGGGGCGCGGTGGGACCCCGTAGGTATTATTCCGGCCCCGAAGCCCCAGCCGCCGCCGCCGTCCACGTTTGCATACCGCGTGTTACTATGTAATGAACTACAGTCTGTGATGCTCGTGCAGCAAGCGTCCACCCCGAAGGCCTGTCCTTCCGCAGACATCTGCAGTGTTTCCGTGTGAAGGAAAGCTTAGTTTTCCTGTCCGATGCCTTTTTTTGGAGTCGATTGAGATCCGGTTTGGACTGGCTTGCTGTGTTAGTCCTCGAAGTCCACGTGAGCCTCCCGTCCTAAACCGAGGCTGGAGACCGCGTTGTCCCCAGGGGGATTCGTTTCCCCCAGCAGATCTCTCGGCTGACATTGAGCCGAGTCGTTTTCAGAAGAAGCCGGTACTGTTGAGAGCTACCCTTTAAAGATGCCTGGCGGCTTTCCGTCTGTCTGTGCGGTTTTTGTTCTGTGGAAAGCATGTTTGCGAGTCATTCCATTCTAGTATTAAGCAGAAGAATGCGTGACGCGTCTCCGGGAGGGGCAGTGGACGAGCGCACCCGCCTCGCTGCGACGTCACGTCAGCCATTTCCgccaagagaaacaaaatgcctcctactcttgtttgtttttctctttttgatcAACActgaagattttgtttttctgaaatcGATTTTGTGAGATTCTCTCAGTGGGTTTTGTTTCatagtgtgatttattttcattactcatctagtttttttttttttttttaaatgtaaacttgttttcattttgacagaCAAGCACTGTAATTAAAGCTattagaataaaatatgaaagataCACCCGATGCTGTTTTCTTCTATGATTTGTAATGACTTTTGTGGTCTCCAATGAAAAGGGCAACGCATAGGAATGTTAGTTCTACTTGAAATGGTGGACGTCTGTCAGATAAATGAATACACAGCCAGGTGTGGCTAGGTCTGGAGTTTTGAGATCTCTGCAGTGTGGTTCACCTAAAGCAAAGCGGTTGTAGAGACTGCCTCCCTGCCTCGTCTTTCCGGCAACGGGTGAGGCGACCCGTTAGACCTCAAGGCTCGAGGTCTTCGGACTCTTGAGGGTGTGAGATTTACACCTTTCTAGAGGTCTGCGATCTCCAGCCACATGTCCGACATCCTGCTGTCCGTGTTTGTGGTATGTGCCGGTGCTTCACTTGCCGTGCCCAGCATCGCGGGGCCGTGTGGAGACATGTAAGCTTTGAGATCTGACTTCAGTAAAAGATGACAACAAAAGCAAGTCCTCAGGTTATTGAACTTTGTcaatgcacttttttgtttttcttcctgctgCACAACTGTCCGTAGCTCCCATCTCTCACGTGTAAAGGAAACCCGCGCTCGTTTGACACAGACTAGTTGCAGACTCGTACCTTTTGGGGACTGGATGACGCTTGTGACCGGGCTGGTGGCCCAGCACTTGGTGCAAGCAGCATGTGCATGACTGTCCCGAAGTATGCATTCACTACTGTATGATAGatgttcctgtttgtttgtttctgatctGAATAAAAGGAAGTCCACCGAGACTGATCTGCTTTCGGTTTTGTCAATGTGCTTGGGATGAAGTGTTTTGTTTCGTTTCAGTTACAAAAATTTGAATCCACAAAGCCCCTGCAGACATGATTTGAAGATTTCCTAGAGCTGATCACAGATATTTGATGCTGCATTATCAGTTCTGTAATGAAATGGGTATGTGACTAATTTATGAACTAAGGTCACtaggctttaaaataaacccaCCATAATGTTGACTAATAATCTTCAATCCACAGTTATGGGTAAGTTACTTGGTGGCTGTTTCTGTTCAATGTTCTAATATGTCTACATTTGAACATTCTCCCAAATGATTAAACTGATG

Function

symbol description
arf1 Predicted to enable GTP binding activity. Acts upstream of or within semicircular canal development. Predicted to be active in cytoplasm and plasma membrane. Is expressed in brain; head; pharyngeal arch 3-7; and semicircular canal. Human ortholog(s) of this gene implicated in periventricular nodular heterotopia. Orthologous to human ARF1 (ADP ribosylation factor 1).
arf3 Predicted to enable GTP binding activity. Involved in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Located in extracellular exosome.

NR:

description
PREDICTED: ADP-ribosylation factor 1

GO:

id name namespace
GO:0060872 semicircular canal development biological_process
GO:0006661 phosphatidylinositol biosynthetic process biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07937 ARF1_2; ADP-ribosylation factor 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019091 True 3360 mRNA 0.50 6 2676315 2686173

Neighbor

gene id symbol gene type direction distance location
AMCG00019092 NA coding downstream 18771 2638500 ~ 2657544 (-)
AMCG00019087 NA coding downstream 151186 2520913 ~ 2525129 (-)
AMCG00019085 NA coding downstream 191576 2471464 ~ 2484739 (-)
AMCG00019084 smarcd3,LOC106578675 coding downstream 242240 2409940 ~ 2434075 (-)
AMCG00019077 abcf2 coding downstream 289166 2380537 ~ 2387149 (-)
AMCG00019093 wnt3a,LOC107661901 coding upstream 71927 2758100 ~ 2759745 (-)
AMCG00019094 wnt3a coding upstream 82607 2768780 ~ 2785358 (-)
AMCG00019097 NA coding upstream 391717 3077890 ~ 3094196 (-)
AMCG00019098 NA coding upstream 464657 3150830 ~ 3168130 (-)
AMCG00019102 NA coding upstream 485575 3171748 ~ 3173436 (-)
G31329 NA non-coding downstream 38195 2635184 ~ 2638120 (-)
G31300 NA non-coding downstream 105027 2566801 ~ 2571288 (-)
G31296 NA non-coding downstream 113521 2561475 ~ 2562794 (-)
G31246 NA non-coding downstream 167121 2500133 ~ 2509194 (-)
G31245 NA non-coding downstream 179748 2494716 ~ 2496567 (-)
G31346 NA non-coding upstream 168275 2854448 ~ 2856659 (-)
G31363 jmjd4,LOC107727496,LOC107661892 non-coding upstream 410536 3096709 ~ 3097340 (-)
G31390 NA non-coding upstream 502554 3188727 ~ 3190187 (-)
G31399 NA non-coding upstream 525231 3211404 ~ 3211605 (-)
G31431 NA non-coding upstream 658684 3344857 ~ 3345240 (-)
G31130 NA other downstream 497665 2177980 ~ 2178650 (-)
G31082 NA other downstream 593044 1932341 ~ 2083271 (-)
AMCG00019059 NA other downstream 779883 1882454 ~ 1896432 (-)
G31035 NA other downstream 965772 1705899 ~ 1710543 (-)
AMCG00019034 NA other downstream 1352719 1321614 ~ 1323596 (-)
AMCG00019109 NA other upstream 1534270 4220443 ~ 4229991 (-)
AMCG00019129 NA other upstream 2246176 4932349 ~ 4940667 (-)
AMCG00019128 gorasp1,LOC103377203 other upstream 2254886 4941059 ~ 4986384 (-)
AMCG00019165 NA other upstream 3994452 6680625 ~ 6684301 (-)
AMCG00019209 LOC106600477 other upstream 6160978 8847151 ~ 8901878 (-)

Expression


Co-expression Network