AMCG00019096 (LOC107727496)


Basic Information

Item Value
gene id AMCG00019096
gene name LOC107727496
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 3094452 ~ 3100171 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019096
ATTGCAGTTCCGCGTTAGCCAGAGTCTCGTAGATATCTAATGAATTAGAGGTTTAAATGAAGATAACACAACACACTAGTCCGGTACAAGCCTGCGTGGTGTCTGTATGTCAGCTGCTCATGATAATAGTAGATCAATtgatagatttaaaaaaaacgaaacgATTTCAGTAACTTTATATGGTAAAGCAGCTGACACATACGaggttatttatatttataaacacgTGGATGTCATCAGCAGGGTGCAGATGCAGTTTCCTAGTCAAtatgtttctgttattgtttaatacaaacacaGATCAACTGTAAGCGGGTGGCACTCATGCAGTAAAAGGCGCTGCATTGTGCATTATGATCTTGAGCACTTTATGACATTTGAGTTCACTTGCATGTATTCGCATCGTGTCCAGCGCTTGACTTGTTCAGATGAGCTTTTCACATCATAATGGACAAGGAGACATTTCTCGCGGTTTGCAGTGCAGTCCGGGTCCCCAGACCATCATACGACCAGGCCTGTGTTGCTGACTACATGGAGGCGGACGGTCTCAGCTACTCCAGCTTCTTCAGGAGATACCTGCTGCCAAACTGCCCGTGTGTGTTGGCGGGGAGCCTGACGCAGGAGTGGCCCTGCAGGAAGCTCTGGGTCACCGGGGAGGGGAAGCCTGACTTTCAGCGCCTGCTGCATGATTTTGGAGACGCACAGGTCCCAGTGGCAGACTGCAGTGTGAAGGAGTACAATGCCAATCCAAAGCAGATCCTCCCTTTTAGAGACTACATTGCCTATTGGAAAGAGTACATTCAGCTTGGACACTCATCTCCCAAGGGATGCTTGTATCTCAAGGACTGGCATATGCACAGGCAGTTTCCTGAGCACAGTGTTTACAGAACTCCTGTGTATTTCTCCTCTGATTGGTTGAATGAATACTGGGACAGCATTGAGGTCGATGACTATCGCTTTGTCTACATGGGACCTAAAGGCTCTTGGACTCCCTTCCACGCCGATGTCTTCCGCTCCTACAGCTGGTCAGCTAACGTCTGTGGGAGGAAGAAGTGGCTCCTCTACCCTCCAGGTCAGGAGGAATACCTCAAAGACTGCCACGGCAACCTCACTTTTGACGTCACCTCACCCGTCCTCCAGGACGAGAAGCTGTACCCCCAATACCACAAGGCCTGCCAGCCTCTGGAAGTCATCCAGGAAGCAGGCGAGGTCATCTTTGTGCCCAGTGGGTGGCATCACCAGGTCTATAACTTGGAGGACACCATCTCCATCAATCACAACTGGCTGAACGCCTGTAACCTGGACATCGTGTGGCAGTTCCTGCAAGGGGAGCTGTCGGCAGTGCAGAGCGAGATTGAGGAGTGGAGGAGCACCATGGAGAACTGGCACCAGCACTGCCAGGTGATCATGAAGTCATGCACTGGTATTGATTATGGGgaattttacacatttctgaaGATCATCGCTGAGAACCGTCTGTCAGTCCTGGGCATCCACGCAGACTGCACATCCTCTGGCTCCTGCAGGAGAACACCAGACACTGTGGCAGCTCTGGGTCCCCACCACGCGACCTTTGACCTGCAGAGAGTGGCACACATCTTAGAGTGCCTGCTCAGCGACCAGGACTTTCAGAGGCTGGACACCGATTCCCTGCCTTCGGAGCCAGCCAGCCTGCTGGGGCAGATCACAGAGGCCGTGGCGTTGGCACTGTGACGATACCGACTGCAATTTGGGAACCAAGATGCTGAAGTACTGATGATGGAGTACTTTGTGCCACACATTATATTCTTTTAATCTCTGCCTCTTGCAGTCCAGGACTATATCGCATGTAAAGCCTGCAGCAGACATCAGTCTTCAGGgtgatcttttttttcttgtcctggttttgatttttttctgtttatgcCAATGATTAGGCAAATGTGGACTGACCAAACTGTCcgtgctgttttatttatttttagaagggAGGATTGCAAATCCTTGGGTTTGTTCATCTTGTATGATTGCtcttgttatatataaatattcagcCTTGGTTTAATAAGTGCAGATTAAAGATATTACAAAACTTTACACTCGATACACAACTTAAATGTTATTCATGTGCAGGGGGTTTGATCAGAACTAACACACAATCGTGATTATGTGATGGCAATGCccccacacctctctctctgtagtgGACACATAGTCTCAAAACTAAACCTCTTTTTTGAGGATATTATGATGTTACTTCCATCAGTAacagaacaacaacataatGTGCCGTCCCCcctctaaaatattaaacaaacaacacacgATACGATGAATGAGGAAACTGAGACACAAGTAATGAAAGCTTTTTGGTGAGAGGTGCCTTTTAGACCTCGAACTTCAGAGTTTGTCATAATAAAAGTCAGACTTACTGTATGTAGAGAACATATATGGTACAAGAAACTAATTGTCAACTAATCTCTTCGGTATCCATAGAGACTGaatttctctcttttccttcCTGCTTTTTTTGCTGTTTGGTTTTTCTCTAGATTGATCTGAAATTGTAGCTGGAGGCACTTCAATTTCTTCATCATCTAATTTTGCTTTATACTACTATTCAACGAGCTTAGTAAATACACTGCGGATGAtcatatttgttattaaatataaaagtcaATAAAAAGCACTTAGGAACTGCTAGTTCATAAGTGGAAAACACTGAG
>TU39281
TCGTAGATATCTAATGAATTAGAGGTTTAAATGAAGATAACACAACACACTAGTCCGGTACAAGCCTGCGTGGTGTCTGTATGTCAGCTGCTCATGATAATAGTAGATCAATtgatagatttaaaaaaaacgaaacgATTTCAGTAACTTTATATGGTAAAGCAGCTGACACATACGaggttatttatatttataaacacgTGGATGTCATCAGCAGGGTGCAGATGCAGTTTCCTAGTCAAtatgtttctgttattgtttaatacaaacacaGATCAACTGTAAGCGGGTGGCACTCATGCAGTAAAAGGCGCTGCATTGTGCATTATGATCTTGAGCACTTTATGACATTTGAGTTCACTTGCATGTATTCGCATCGTGTCCAGCGCTTGACTTGTTCAGATGAGCTTTTCACATCATAATGGACAAGGAGACATTTCTCGCGGTTTGCAGTGCAGTCCGGGTCCCCAGACCATCATACGACCAGGCCTGTGTTGCTGACTACATGGAGGCGGACGGTCTCAGCTACTCCAGCTTCTTCAGGAGATACCTGCTGCCAAACTGCCCGTGTGTGTTGGCGGGGAGCCTGACGCAGGAGTGGCCCTGCAGGAAGCTCTGGGTCACCGGGGAGGGGAAGCCTGACTTTCAGCGCCTGCTGCATGATTTTGGAGACGCACAGGTCCCAGTGGCAGACTGCAGTGTGAAGGAGTACAATGCCAATCCAAAGCAGATCCTCCCTTTTAGAGACTACATTGCCTATTGGAAAGAGTACATTCAGCTTGGACACTCATCTCCCAAGGGATGCTTGTATCTCAAGGACTGGCATATGCACAGGCAGTTTCCTGAGCACAGTGTTTACAGAACTCCTGTGTATTTCTCCTCTGATTGGTTGAATGAATACTGGGACAGCATTGAGGTCGATGACTATCGCTTTGTCTACATGGGACCTAAAGGCTCTTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019096 True 2705 mRNA 0.46 6 3094452 3100171
TU39281 False 961 TUCP 0.46 3 3094478 3096426

Neighbor

gene id symbol gene type direction distance location
AMCG00019095 wnt9a,LOC106599874 coding upstream 244452 2845380 ~ 2850000 (+)
AMCG00019088 NA coding upstream 428588 2658553 ~ 2665864 (+)
AMCG00019090 NA coding upstream 458049 2619235 ~ 2636403 (+)
AMCG00019086 NA coding upstream 592813 2491498 ~ 2501639 (+)
AMCG00019083 NA coding upstream 605464 2487342 ~ 2488988 (+)
AMCG00019101 ccny,LOC107739127,LOC107588043,LOC108431590 coding downstream 157490 3257661 ~ 3275357 (+)
AMCG00019099 NA coding downstream 181989 3282160 ~ 3285119 (+)
AMCG00019104 LOC107588097 coding downstream 531564 3631735 ~ 3635688 (+)
AMCG00019107 NA coding downstream 1148222 4248393 ~ 4249743 (+)
AMCG00019106 NA coding downstream 1168080 4268251 ~ 4282752 (+)
G31351 NA non-coding upstream 17296 3076916 ~ 3077156 (+)
G31217 NA non-coding upstream 684565 2404126 ~ 2409887 (+)
G31141 NA non-coding upstream 885263 2188968 ~ 2209189 (+)
G31143 NA non-coding upstream 902244 2191421 ~ 2192208 (+)
G31117 NA non-coding upstream 917096 2177148 ~ 2177356 (+)
G31380 NA non-coding downstream 39516 3139687 ~ 3165672 (+)
G31430 NA non-coding downstream 244584 3344755 ~ 3345244 (+)
G31432 NA non-coding downstream 253169 3353340 ~ 3388685 (+)
G31461 NA non-coding downstream 764018 3864189 ~ 3864604 (+)
G31566 NA non-coding downstream 1647377 4747548 ~ 4747749 (+)
AMCG00019089 NA other upstream 476400 2520104 ~ 2618052 (+)
G31110 NA other upstream 946889 2141830 ~ 2147563 (+)
AMCG00019064 NA other upstream 1208901 1861829 ~ 1885551 (+)
AMCG00019046 NA other upstream 1488907 1585825 ~ 1605545 (+)
AMCG00019033 NA other upstream 1772959 1318622 ~ 1321493 (+)
AMCG00019100 crem,crema,LOC105019435,LOC106578540,LOC108428923,LOC103396770 other downstream 90441 3190612 ~ 3210890 (+)
AMCG00019111 phlpp1,LOC106599727,LOC103135813,LOC101477421,LOC106925929,LOC102225687,LOC103479552 other downstream 1219425 4319596 ~ 4368203 (+)
AMCG00019154 ghrhrb,LOC107704523,LOC106560417,LOC107717144,LOC107556991 other downstream 2830533 5930704 ~ 5939597 (+)
G32005 NA other downstream 4320330 7420501 ~ 7421083 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other downstream 5245284 8345455 ~ 8384592 (+)

Expression


Co-expression Network