AMCG00019100 (crem,crema,LOC105019435,LOC106578540,LOC108428923,LOC103396770)


Basic Information

Item Value
gene id AMCG00019100
gene name crem,crema,LOC105019435,LOC106578540,LOC108428923,LOC103396770
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 3190612 ~ 3210890 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019100
GTCGGTATTACCTGAGCGCCGCTGCCTTCATGGTTTGAAACGGACACTTACTGGCGGATTTAGCGCGCAACTGGGAAGTTGTTTTGCActcatgctttgtttttgtctggTGACATTTTTATGATATGGGGTCATTAGTTAACAATTGTGCACACTAGTCTGTTGTGtaaattgcaattaaattaGTTTGCATGCTTTTACCTTGCACTGGACTGgattaaatgcaatattattttgcattttcgCATTTCAGTAATGGGCTTAAAGCGAAGCTGCATTCTTTAATTAAACAGCCGCTTGCTTATCAAGTCTgtgtaaaacaattattttattcacatgctttgaaataaaaccttttttattgtcttatttTCTCCCTTTGATGTCACAGTATTAATTAGGCGCCTTCGCTTGTAACATTGTTGCGTCTCAGAGGGCTTGAGTGCCGACGTTTATACACAAATGCACCCTGACGGGAGGCGGCTCCGCTTTCCCCGGCGATCCCGCAGAGCAGGGCCGCTGACACGGCCGGGGCATCTGAAATGGGCTGCTGCCCTGTCCGTGTCCCAGTCGCTCCCGCCCTCCAGTGTCCCGCACGGCCCAGCCAGCGGCCATTCGGAGAAGTGCGTCTGCCGGCCCGGGTCGCAGGCGGCGCACAGCTGTTACTGCCCCGCCGGACAGGCGCTGAGGGCAAACCAGTGCCGGTGTGTTCAGTCCGGACGGTGTGGGCGCACCTGTCTGTCTCTTGCAACACAACCCCAGTTTGGCGCCGCACACACCGGCGGTGGCGCAGTGATCCGAGGCGTCTCTGTAGGCCCAATGACCATGGAAACTGTGGTCGAGTCTAAACAGGATGGAAGTGTTGACGATTCTGTAGCTGATGGAGAAGCCATTCAAATGCAGAACCAGTCTACCCACTCTCCAGTCTCGAAACTTGCACAGGTAGCTGCAATAGCAGAGTCAGATGATGCAGAATCTACAGAAGgtgtcacagacacacagaaaaggagagaaatTCTCTCCAGGCGACCATCTTACAGAAAAATTCTTAATGAATTATCTTCTGATACACCGGCTGTGCCAAAGATCGAAGAAGAGAAGGCCGAGGAGGAGGGAAGCGCTTCCAGTGTTGCACCCATAAGCGTGCCCTCCATCTATCAGACCAGCACTGGCCAATACATTGCCATTTCCCAAGGTGGAGCAATCCAGATTGCCAGTCCGGGAGGTGATGGCATCCAGGGGCTACAGACGTTGACCATGACAAACTCGGGCACACCCCAGCCGGGGGCCACCATTGTGCAGTACACTGCGCAGTCCAGTGATGGCACCCAGCAGTTCTTTGTCCCAGGCAGCCAGGTGGTTGTCCAAGCCGCCACTGGTGACATGCCTACCTACCAGATCCGCACCCCGACATCGAGTTTGCCACAAGGGGTTGTGATGGCGGCGTCGCCCAGCTCCCTGCACAGCCCACAGCAGCTGGCCGAGGAAGCGACACGGAAGAGGGAACTCAGGCTCATGAAAAACAGGTACGGCCATTAACGCCTGCAGAAATCTTCTGGTAAAGTGAGACGAATCTCACAGCGTCTTCAATTGAACTTTTAATGAAAGTTCAGTTTACGGTCAGTACATTTCATCGGCATGACCACATACCCTgtcaattgaaaatgtatagaaCTCGTCTTTGGAAGACGTCTTATCCGTTTGTGAAAGTGAAGCTCTGAGAAGAAGCATACAAACAGAGAGGTTCATGGTCTCCACTATAGTATATGTTCATTAATCATGCGTCCTGTCCACCCTTTGCCTGCCATTCATGCCTTATTCTTGGACACTTCCTGTCATGCCTTTAACGTGCAATTCGTTCATGCTTTTGGATAATTGTTCCCACTTTGTCATATTGCATGGCTGCCTCTCTCCCTTGTTTAATGCTGCTGGAcctttgttgttgctgtatgCAGTGCCCTTCATGCGTTTGGTTTCTCCCCTTCCCTTACTTGTACACTTGCGCCTGCTGTAGTGTTTAGCGCATGTTGGTTCTTGGACTGTTGAAGCCTCTGACTCATTAGAAATTAATTCTGCAACTATACCTTCTTTGTAAATTATTGGTCTGTTTCAAATCAATGTCCCGCTGAAAGCCTTTATTGAGCAGTTTTCTACATTTCTGTGAATCGAAATGTTGGCATTTCATGAGATATTAAAAACTTGTCTTTAAGTGACTGTTTTTTCAGATTATACTTTCTACACTCTCTGGTCTCCGAGGGACTTGCTTAGTCTTGCATTTTGGATACTATACAATGGAGAGTAGGACATGAAGCTGCCAGCGTGGCTGGATGTGTGAATGGTCTTTTTATTCTGCTTCTTGATGCTTTGAAATCCATTTTTTTATGGGAGTTGTTTGTTGTGTTGGTTCCAGGGAGGCTGCTCGGGAATGCCgcagaaagaagaaagaatacGTCAAATGTCTTGAAAATCGTGTGGCGGTGcttgaaaatcaaaacaagactCTCATTGAGGAACTTAAAGCTCTCAAAGACCTGTATTGCCATAAAACAGAATAACTACCACCTTGGTCTGGGAACCAAAAGACTTATAATAAAGGCATGAGAGGGTTCATTTTACAGACTGCTGTAAAGATTTGGGGCGAAAACAAATCTTCGTGTTGTGCTCCAGCTCGGCTTTTGGCTTAATACTTTTAAGAACTTTGTGAATTCTGTCCCAGCTCTTGGAAAGCAATTATGTCCATGTCCATCGTGAGAATCATGTCCAGCACTTTCTTTCACAGAGTTATTTAGCATGTGAATATTGCGTGTTGCCCCTGTCGCTTCTGCTCTTGCAGGCAGGCTGCCAAAGCGTGCCGCCGTCGGAAGAAGACCTATGTAAGCTGTCTGGAGAGTCGTCTTGAGATACTTGAAGTCCAGAACAAGAAGTTGACCGCTGAGCTTCAAAACCTGAAGAACATTTATTGtggaaaattgtattaatgtatccAAAATGGAATACAAGTTCAAACACTCTTTTGTTAACTGTTTAAATCAGACCTGCTTGTTTTGCGATGCTTTTCtcaactgcattattattattattattattattattattgttattattacattccTCTGTGTGGTTTTCAACTCCTGTAGAATATAAGATGTAAAGAACTAGTAGCTATAACACAAGAATGCCCaagttaatgcatttaaatgtgtccCATTGTCAAACACCAttatctgttttatatatacctTTTCAATGGACATTCTACagaccttttattatttttcaaagcagcCAGAAAAGTTGAAGCCAGTTTGACACGTGCTAGTGTGAATCGAACCCCAGCTTTTCTTTACACCCCAGTGCATCTCCTTTTATGTAAATGGGAAAGATCTGTTCTCTACCCCCCCACAGGCCTGGGTAGAGCATTTCAGGTCAGTACGGGATCTGAACAGAGACAGGTAAATGAGTGTCTAAGTACTGGCCTGCGGTAGATTTAAGATAAATCTATTTTGTGTACGACCAGCCAATTATATGTACCTCTGAGAGGATTTTTCTATTAAAGTGTTATTGacaatttattaaatatttagtttatatattttttggggggagatAATgttatacacactcacacacatacacataaagtgtgtatttatatatatgtagctGTACCTATTTTTGCTGATATTTCATATTGATGTTTCAGTCAggtataatgtaaatgtttgcaGAGTGGACGTGTTGTGGAAGAAAAGCAAGATGGTTAACCTGACTCCAGCTTAGCGTGAGTGTACAGACGTTTTGCGCCCCAATTAGAggcatttatattataataatacagagaaatgcagaaatgttCTTTGCTGCCTGAATAATGGCTGGGTTTTGCAGCCTTGTGTATCACATTGCTCTCGGTATGTCtctttgatttatgtttttaaaactgcatttctaTTAGTCTGATAAATCTGTTATGAAAAATGTGCCATTTCAGAAACCACTAGCATACGCTGGGAagactgaaattaataaaacattgaataagCCTTTAGGATTTACATTTATTCACCTTTCAAAGCTGGAGTGCTTTCAGCTGTTATGTTCAGATGCGATCAACTGGGGAATTTCACCAAAACAGTACCTGACATATTAGGAAATGCATActagagaaattaaaaaatgcacatcttggtgtgtgtgagaaagGACTGAGTTTGTACATACACTACATCCTTAAACTCTTACATTACCAT
>TU39314
TATTATAGCCCTGCACTTACACACCACAGTTTACCTTGAATGCAGTCTTTAGACATTACTCAACTGTTTTAGTGTTGATTATTTCACAGAGGATAATCTTTAAATTATGTTATGAAAATGTAGAGGATGCATCAGTGGCTGTGGTTTGATACTTTTCACTTTATCtattctgtattgtattataaacaTGATATCATATAAGCCACAGCTATCTACAGAAATGTAGTTCTGGCAACCAGCAGGTTTGGGCACAAGTGGAGTTTTAATAGTACCTCAGTGTTTCACAAACATGACAATAAGTGTAGGGGCTGCTTCTGCGTCCTGCTGGTTACTATAGAGTCTGAACAAAAGCAGTTGATTTAAGCACAGGGGAATGGCTCCAGCGACAAACCATGTTATTGACTCTGGGAAGCCAATGATGTCATTGTGATGTCAATGCCCTTAATTGTAATCCTACACATAGTTGCTGATTGGGGATCATTTCATGTTGAAAGCAGAGCGAGTGGGTTCCTCTTGGATTAACAAAAAAGAATATACATGGCTGTAACTGGGGATGAGACAGAGTCAGCCGCCACTGGTGACATGCCTACCTACCAGATCCGCACCCCGACATCGAGTTTGCCACAAGGGGTTGTGATGGCGGCGTCGCCCAGCTCCCTGCACAGCCCACAGCAGCTGGCCGAGGAAGCGACACGGAAGAGGGAACTCAGGCTCATGAAAAACAGGGAGGCTGCTCGGGAATGCCgcagaaagaagaaagaatacGTCAAATGTCTTGAAAATCGTGTGGCGGTGcttgaaaatcaaaacaagactCTCATTGAGGAACTTAAAGCTCTCAAAGACCTGTATTGCCATAAAACAGAATAACTACCACCTTGGTCTGGGAACCAAAAGACTTATAATAAAGGCATGAGAGGGTTCATTTTACAGACTGCTGTAAAGATTTGGGGCGAAAACAAATCTTCGTGTTGTGCTCCAGCTCGGCTTTTGGCTTAATACTTTTAAGAACTTTGTGAATTCTGTCCCAGCTCTTGGAAAGCAATTATGTCCATGTCCATCGTGAGAATCATGTCCAGCACTTTCTTTCACAGAGTTATTTAGCATGTGAATATTGCGTGTTGCCCCTGTCGCTTCTGCTCTTGCAGGCAGGCTGCCAAAGCGTGCCGCCGTCGGAAGAAGACCTATGTAAGCTGTCTGGAGAGTCGTCTTGAGATACTTGAAGTCCAGAACAAGAAGTTGACCGCTGAGCTTCAAAACCTGAAGAACATTTATTGtggaaaattgtattaatgtatccAAAATGGAATACAAGTTCAAACACTCTTTTGTTAACTGTTTAAATCAGACCTGCTTGTTTTGCGATGCTTTTCtcaactgcattattattattattattattattattattgttattattacattccTCTGTGTGGTTTTCAACTCCTGTAGAATATAAGATGTAAAGAACTAGTAGCTATAACACAAGAATGCCCaagttaatgcatttaaatgtgtccCATTGTCAAACACCAttatctgttttatatatacctTTTCAATGGACATTCTACagaccttttattatttttcaaagcagcCAGAAAAGTTGAAGCCAGTTTGACACGTGCTAGTGTGAATCGAACCCCAGCTTTTCTTTACACCCCAGTGCATCTCCTTTTATGTAAATGGGAAAGATCTGTTCTCTACCCCCCCACAGGCCTGGGTAGAGCATTTCAGGTCAGTACGGGATCTGAACAGAGACAGGTAAATGAGTGTCTAAGTACTGGCCTGCGGTAGATTTAAGATAAATCTATTTTGTGTACGACCAGCCAATTATATGTACCTCTGAGAGGATTTTTCTATTAAAGTGTTATTGacaatttattaaatatttagtttatatattttttggggggagatAATgttatacacactcacacacatacacataaagtgtgtatttatatatatgtagctGTACCTATTTTTGCTGATATTTCATATTGATGTTTCAGTCAggtataatgtaaatgtttgcaGAGTGGACGTGTTGTGGAAGAAAAGCAAGATGGTTAACCTGACTCCAGCTTAGCGTGAGTGTACAGACGTTTTGCGCCCCAATTAGAggcatttatattataataatacagagaaatgcagaaatgttCTTTGCTGCCTGAATAATGGCTGGGTTTTGCAGCCTTGTGTATCACATTGCTCTCGGTATGTCtctttgatttatgtttttaaaactgcatttctaTTAGTCTGATAAATCTGTTATGAAAAATGTGCCATTTCAGAAACCACTAGCATACGCTGGGAagactgaaattaataaaacattgaataagC
>TU39316
TATTATAGCCCTGCACTTACACACCACAGTTTACCTTGAATGCAGTCTTTAGACATTACTCAACTGTTTTAGTGTTGATTATTTCACAGAGGATAATCTTTAAATTATGTTATGAAAATGTAGAGGATGCATCAGTGGCTGTGGTTTGATACTTTTCACTTTATCtattctgtattgtattataaacaTGATATCATATAAGCCACAGCTATCTACAGAAATGTAGTTCTGGCAACCAGCAGGTTTGGGCACAAGTGGAGTTTTAATAGTACCTCAGTGTTTCACAAACATGACAATAAGTGTAGGGGCTGCTTCTGCGTCCTGCTGGTTACTATAGAGTCTGAACAAAAGCAGTTGATTTAAGCACAGGGGAATGGCTCCAGCGACAAACCATGTTATTGACTCTGGGAAGCCAATGATGTCATTGTGATGTCAATGCCCTTAATTGTAATCCTACACATAGTTGCTGATTGGGGATCATTTCATGTTGAAAGCAGAGCGAGTGGGTTCCTCTTGGATTAACAAAAAAGAATATACATGGCTGTAACTGGGGATGAGACAGAGTCAGCCGCCACTGGTGACATGCCTACCTACCAGATCCGCACCCCGACATCGAGTTTGCCACAAGGGGTTGTGATGGCGGCGTCGCCCAGCTCCCTGCACAGCCCACAGCAGCTGGCCGAGGAAGCGACACGGAAGAGGGAACTCAGGCTCATGAAAAACAGGCAGGCTGCCAAAGCGTGCCGCCGTCGGAAGAAGACCTATGTAAGCTGTCTGGAGAGTCGTCTTGAGATACTTGAAGTCCAGAACAAGAAGTTGACCGCTGAGCTTCAAAACCTGAAGAACATTTATTGtggaaaattgtattaatgtatccAAAATGGAATACAAGTTCAAACACTCTTTTGTTAACTGTTTAAATCAGACCTGCTTGTTTTGCGATGCTTTTCtcaactgcattattattattattattattattattattgttattattacattccTCTGTGTGGTTTTCAACTCCTGTAGAATATAAGATGTAAAGAACTAGTAGCTATAACACAAGAATGCCCaagttaatgcatttaaatgtgtccCATTGTCAAACACCAttatctgttttatatatacctTTTCAATGGACATTCTACagaccttttattatttttcaaagcagcCAGAAAAGTTGAAGCCAGTTTGACACGTGCTAGTGTGAATCGAACCCCAGCTTTTCTTTACACCCCAGTGCATCTCCTTTTATGTAAATGGGAAAGATCTGTTCTCTACCCCCCCACAGGCCTGGGTAGAGCATTTCAGGTCAGTACGGGATCTGAACAGAGACAGGTAAATGAGTGTCTAAGTACTGGCCTGCGGTAGATTTAAGATAAATCTATTTTGTGTACGACCAGCCAATTATATGTACCTCTGAGAGGATTTTTCTATTAAAGTGTTATTGacaatttattaaatatttagtttatatattttttggggggagatAATgttatacacactcacacacatacacataaagtgtgtatttatatatatgtagctGTACCTATTTTTGCTGATATTTCATATTGATGTTTCAGTCAggtataatgtaaatgtttgcaGAGTGGACGTGTTGTGGAAGAAAAGCAAGATGGTTAACCTGACTCCAGCTTAGCGTGAGTGTACAGACGTTTTGCGCCCCAATTAGAggcatttatattataataatacagagaaatgcagaaatgttCTTTGCTGCCTGAATAATGGCTGGGTTTTGCAGCCTTGTGTATCACATTGCTCTCGGTATGTCtctttgatttatgtttttaaaactgcatttctaTTAGTCTGATAAATCTGTTATGAAAAATGTGCCATTTCAGAAACCACTAGCATACGCTGGGAagactgaaattaataaaacattgaataagC

Function

symbol description
crema Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of ATF4-CREB1 transcription factor complex. Is expressed in brain. Orthologous to human CREM (cAMP responsive element modulator).
crem Enables DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II. Predicted to be located in cytoplasm and nucleus. Predicted to be part of ATF4-CREB1 transcription factor complex and chromatin.

GO: NA

KEGG:

id description
K09052 CREM; cAMP response element modulator

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019100 True 4250 mRNA 0.44 6 3190612 3210890
TU39314 False 2358 TUCP 0.40 3 3203787 3210683
TU39316 False 1935 TUCP 0.39 3 3203787 3210683

Neighbor

gene id symbol gene type direction distance location
AMCG00019095 wnt9a,LOC106599874 coding upstream 340612 2845380 ~ 2850000 (+)
AMCG00019088 NA coding upstream 524748 2658553 ~ 2665864 (+)
AMCG00019090 NA coding upstream 554209 2619235 ~ 2636403 (+)
AMCG00019086 NA coding upstream 688973 2491498 ~ 2501639 (+)
AMCG00019083 NA coding upstream 701624 2487342 ~ 2488988 (+)
AMCG00019101 ccny,LOC107739127,LOC107588043,LOC108431590 coding downstream 46771 3257661 ~ 3275357 (+)
AMCG00019099 NA coding downstream 71270 3282160 ~ 3285119 (+)
AMCG00019104 LOC107588097 coding downstream 420845 3631735 ~ 3635688 (+)
AMCG00019107 NA coding downstream 1037503 4248393 ~ 4249743 (+)
AMCG00019106 NA coding downstream 1057361 4268251 ~ 4282752 (+)
G31380 NA non-coding upstream 24940 3139687 ~ 3165672 (+)
G31351 NA non-coding upstream 113456 3076916 ~ 3077156 (+)
G31217 NA non-coding upstream 780725 2404126 ~ 2409887 (+)
G31141 NA non-coding upstream 981423 2188968 ~ 2209189 (+)
G31143 NA non-coding upstream 998404 2191421 ~ 2192208 (+)
G31430 NA non-coding downstream 133865 3344755 ~ 3345244 (+)
G31432 NA non-coding downstream 142450 3353340 ~ 3388685 (+)
G31461 NA non-coding downstream 653299 3864189 ~ 3864604 (+)
G31566 NA non-coding downstream 1536658 4747548 ~ 4747749 (+)
G31622 NA non-coding downstream 1762082 4972972 ~ 5030095 (+)
AMCG00019096 LOC107727496 other upstream 90441 3094452 ~ 3100171 (+)
AMCG00019089 NA other upstream 572560 2520104 ~ 2618052 (+)
G31110 NA other upstream 1043049 2141830 ~ 2147563 (+)
AMCG00019064 NA other upstream 1305061 1861829 ~ 1885551 (+)
AMCG00019046 NA other upstream 1585067 1585825 ~ 1605545 (+)
AMCG00019111 phlpp1,LOC106599727,LOC103135813,LOC101477421,LOC106925929,LOC102225687,LOC103479552 other downstream 1108706 4319596 ~ 4368203 (+)
AMCG00019154 ghrhrb,LOC107704523,LOC106560417,LOC107717144,LOC107556991 other downstream 2719814 5930704 ~ 5939597 (+)
G32005 NA other downstream 4209611 7420501 ~ 7421083 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other downstream 5134565 8345455 ~ 8384592 (+)
G32286 NA other downstream 6050484 9261374 ~ 9539211 (+)

Expression


Co-expression Network