AMCG00019101 (ccny,LOC107739127,LOC107588043,LOC108431590)


Basic Information

Item Value
gene id AMCG00019101
gene name ccny,LOC107739127,LOC107588043,LOC108431590
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 3257661 ~ 3275357 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019101
ATGAATGATTCGATTCACATaagttttatttcatatttgccAACTGGATCACCCTACATTGTCACGGGACAAGACAAACTAGCCTTGTTCAAGCTTCATTTAAacctctccttttctttttacacagATTTAAACATGGAGTACAATCCTTCGGATCATCCACGAGCAAGCACGATATTCCTCAGCAAGTCGCAGACAGACGttgctGTTCCCAACAAAAAAGtgagggaaaaacgGAAGAGCCTCTACATTAATCATGTTGACACTGTTCTTCTGCAGCATCCGCCCGGGCAAATTAGAAGGAAGTACAGCTCCTGTTCCACTATTTTCTTAGATGACAGCACAGTTAGTCAACCCAACCTCAAGTATACCATTAAATGTGTAGCTCTTGCAATATATTACCACATAAAAAACAGAGACACCGATGGACGAATGTTGTTAGACATCTTTGATGAGAAACTCCATCCGCTTACGAAATCTGACGTGCCCTCAGACTATGACAAGCACGACCCGGAGCAGAAGCACATCTACCGCTTCGTTCGGACCCTCTTTAGTGCTGCGCAGTTGACTGCAGAATGTGCCATTGTAACGCTGGTATATCTTGAAAGACTCTTGACATATGCAGAGATTGACATCTGTCCCGCGAACTGGAAGCGAATTGTCCTGGGCGCCATCTTGCTAGCGTCTAAAGTGTGGGATGATCAGGCGGTCTGGAATGTGGACTACTGTCAGATCCTGAAGGACATCACAGTGGAAGACATGAATGAACTGGAGCGACAGTTTCTGGAGCTGCTGCAGTTCAATATTAACGTCCCCTCGAGTGTTTATGCAAAGTATTATTTTGACCTGCGTTCCCTTTCAGAGGCGAACAATTTGAGCTTCCCCTTGGAACCGCTCAGCAGGGACAAGGCACAGAAGCTGGAGGCTATCTCCCGGTTGTGTGATGACAAGTATAAGGACTTGAGGAAAGCGGCGAAGAAGCGCTCTGTAAGTGCGGACAATCTGACTGTGGTGAGGTGGTCTCCTGCCATCTTATCCTAA

Function

symbol description
ccny Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Acts upstream of or within response to yeast. Predicted to be active in cytoplasm and plasma membrane. Orthologous to human CCNY (cyclin Y).

NR:

description
cyclin-Y isoform X1

GO:

id name namespace
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0019901 protein kinase binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019101 True 1041 mRNA 0.46 10 3257661 3275357

Neighbor

gene id symbol gene type direction distance location
AMCG00019095 wnt9a,LOC106599874 coding upstream 407661 2845380 ~ 2850000 (+)
AMCG00019088 NA coding upstream 591797 2658553 ~ 2665864 (+)
AMCG00019090 NA coding upstream 621258 2619235 ~ 2636403 (+)
AMCG00019086 NA coding upstream 756022 2491498 ~ 2501639 (+)
AMCG00019083 NA coding upstream 768673 2487342 ~ 2488988 (+)
AMCG00019099 NA coding downstream 6803 3282160 ~ 3285119 (+)
AMCG00019104 LOC107588097 coding downstream 356378 3631735 ~ 3635688 (+)
AMCG00019107 NA coding downstream 973036 4248393 ~ 4249743 (+)
AMCG00019106 NA coding downstream 992894 4268251 ~ 4282752 (+)
AMCG00019113 rheb,LOC106579659 coding downstream 1134626 4409983 ~ 4423443 (+)
G31380 NA non-coding upstream 91989 3139687 ~ 3165672 (+)
G31351 NA non-coding upstream 180505 3076916 ~ 3077156 (+)
G31217 NA non-coding upstream 847774 2404126 ~ 2409887 (+)
G31141 NA non-coding upstream 1048472 2188968 ~ 2209189 (+)
G31143 NA non-coding upstream 1065453 2191421 ~ 2192208 (+)
G31430 NA non-coding downstream 69398 3344755 ~ 3345244 (+)
G31432 NA non-coding downstream 77983 3353340 ~ 3388685 (+)
G31461 NA non-coding downstream 588832 3864189 ~ 3864604 (+)
G31566 NA non-coding downstream 1472191 4747548 ~ 4747749 (+)
G31622 NA non-coding downstream 1697615 4972972 ~ 5030095 (+)
AMCG00019100 crem,crema,LOC105019435,LOC106578540,LOC108428923,LOC103396770 other upstream 46771 3190612 ~ 3210890 (+)
AMCG00019096 LOC107727496 other upstream 157490 3094452 ~ 3100171 (+)
AMCG00019089 NA other upstream 639609 2520104 ~ 2618052 (+)
G31110 NA other upstream 1110098 2141830 ~ 2147563 (+)
AMCG00019064 NA other upstream 1372110 1861829 ~ 1885551 (+)
AMCG00019111 phlpp1,LOC106599727,LOC103135813,LOC101477421,LOC106925929,LOC102225687,LOC103479552 other downstream 1044239 4319596 ~ 4368203 (+)
AMCG00019154 ghrhrb,LOC107704523,LOC106560417,LOC107717144,LOC107556991 other downstream 2655347 5930704 ~ 5939597 (+)
G32005 NA other downstream 4145144 7420501 ~ 7421083 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other downstream 5070098 8345455 ~ 8384592 (+)
G32286 NA other downstream 5986017 9261374 ~ 9539211 (+)

Expression


Co-expression Network