AMCG00019104 (LOC107588097)


Basic Information

Item Value
gene id AMCG00019104
gene name LOC107588097
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 3631735 ~ 3635688 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019104
ATGGGCGAGCGGGACCCTTCACACAAACGCGCCAATCGGCAGGCCGGAGAGAGCGAGTGCAGGTCAGGAGACGCCGCTGATTGGCGGACGacatGCTTGGAGTTAGAAAGGTATCTTCAGAGCGAACCTTATGTCTCTGCCTCAGACATCAAATTTGACAGCCAGGAGGATTTGTGGAGTAAACTCATCTTGGCTTGTGGCGACAAGGGGGAGGCTGATCCAAAGATCGCTCGCATAAAAGAAGAGGACAATCAGGATAACCAAAATTTGGAGACCAACAGCTTGAACTCAGATGCCAGCAGTGAAGCCTCTGACAGCTCAGAGGAGCTCTCTCCTACTCTGAACTTTACCTCAAATCCTTTAAATGATGTTTTGGTCAATTCTGGACACTTGAGCTCTTCGGTTATTACCACGCCACCATCTTCTCCAGAGCTCAGCAAAGAGCCCATCATCCCACAGGTGTGGAGCGGGATACAAACTGAACTGCACTCCCCTGGGAAGGTCCGTGCTGGCAGTGTTGGAAAGACTACAGAAAAGACTAGCCCTGCAAATGGGGAGACTTCACCCGATGGCAGAAGACGGGTGCATAGGTGTCATTTCAATGGCTGCAGAAAGGTTTACACAAAAAGTTCTCACTTAAAAGCACATCAGCGCACTCATACAGGTGAAAAGCCGTACCGGTGTTCTTGGGAAGGTTGCGAGTGGCGCTTTGCAAGAAGCGATGAGTTAACCAGACACTTCAGAAAGCACACTGGTGCAAAGCCATTTAAATGCAGTCACTGTGACAGGTCTGACCACCTGGCTCTTCACATGAAGAGACACCTCTGA

Function

NR:

description
PREDICTED: Krueppel-like factor 6

GO:

id name namespace
GO:0035265 organ growth biological_process
GO:0031016 pancreas development biological_process
GO:0048565 digestive tract development biological_process
GO:0021634 optic nerve formation biological_process
GO:0001889 liver development biological_process
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K09207 KLF6_7; krueppel-like factor 6/7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019104 True 828 mRNA 0.50 4 3631735 3635688

Neighbor

gene id symbol gene type direction distance location
AMCG00019099 NA coding upstream 346616 3282160 ~ 3285119 (+)
AMCG00019101 ccny,LOC107739127,LOC107588043,LOC108431590 coding upstream 356378 3257661 ~ 3275357 (+)
AMCG00019095 wnt9a,LOC106599874 coding upstream 781735 2845380 ~ 2850000 (+)
AMCG00019088 NA coding upstream 965871 2658553 ~ 2665864 (+)
AMCG00019090 NA coding upstream 995332 2619235 ~ 2636403 (+)
AMCG00019107 NA coding downstream 612705 4248393 ~ 4249743 (+)
AMCG00019106 NA coding downstream 632563 4268251 ~ 4282752 (+)
AMCG00019113 rheb,LOC106579659 coding downstream 774295 4409983 ~ 4423443 (+)
AMCG00019114 crygn,LOC102796340 coding downstream 795208 4430896 ~ 4433550 (+)
AMCG00019115 NA coding downstream 802744 4438432 ~ 4452436 (+)
G31432 NA non-coding upstream 243050 3353340 ~ 3388685 (+)
G31430 NA non-coding upstream 286491 3344755 ~ 3345244 (+)
G31380 NA non-coding upstream 466063 3139687 ~ 3165672 (+)
G31351 NA non-coding upstream 554579 3076916 ~ 3077156 (+)
G31217 NA non-coding upstream 1221848 2404126 ~ 2409887 (+)
G31461 NA non-coding downstream 228501 3864189 ~ 3864604 (+)
G31566 NA non-coding downstream 1111860 4747548 ~ 4747749 (+)
G31622 NA non-coding downstream 1337284 4972972 ~ 5030095 (+)
G31663 NA non-coding downstream 1458193 5093881 ~ 5127629 (+)
G31690 NA non-coding downstream 1542246 5177934 ~ 5183039 (+)
AMCG00019100 crem,crema,LOC105019435,LOC106578540,LOC108428923,LOC103396770 other upstream 420845 3190612 ~ 3210890 (+)
AMCG00019096 LOC107727496 other upstream 531564 3094452 ~ 3100171 (+)
AMCG00019089 NA other upstream 1013683 2520104 ~ 2618052 (+)
G31110 NA other upstream 1484172 2141830 ~ 2147563 (+)
AMCG00019064 NA other upstream 1746184 1861829 ~ 1885551 (+)
AMCG00019111 phlpp1,LOC106599727,LOC103135813,LOC101477421,LOC106925929,LOC102225687,LOC103479552 other downstream 683908 4319596 ~ 4368203 (+)
AMCG00019154 ghrhrb,LOC107704523,LOC106560417,LOC107717144,LOC107556991 other downstream 2295016 5930704 ~ 5939597 (+)
G32005 NA other downstream 3784813 7420501 ~ 7421083 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other downstream 4709767 8345455 ~ 8384592 (+)
G32286 NA other downstream 5625686 9261374 ~ 9539211 (+)

Expression


Co-expression Network