AMCG00019110


Basic Information

Item Value
gene id AMCG00019110
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 4175475 ~ 4176838 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019110
ATGGAAAACACAAGTCTGACAACCCTTCTGCCCACCACCACCATTACTTACTACTATGATGACTACAACACCAGTGATGATTTTGTGTACCTCTGTGACAAGACAGATGTCAACAGGTTTGGTGCGAGAGTGATGCCACTCTTCTACTACTCTATCTTCATGCTGAGCTTGTTCGGGAATGGCTTGGTCTTGTATATCATTTTTAAGTTCGAGAAAATGAACACTGTCACCAACATCTTTCTGCTCAACTTAGTAATTTCAGATTTGGTGTTTGcctcttcccttcctttctgGGCTGTGTACCACTCGTCTGAATGGATCTTCGGCAGGGCAATATGCAAAATAGTAGGCAGCGTGTATTTTATTGGGTTCTACAGTTCAATCCTGTTCTTGACGCTGATGACCTTCGATAGGTACCTGGCTGTGGTGCACGCCATCACCGCTGCCAAGAAAAGACGGACTCTGTATGCCTTTGTCTCGAGCGCAGTAGTGTGGTGCGTTAGCTTTGTAGCCACAGTGAAGGAGTTCATACTGTATGACGTTCAAGAAAACGGCACCTATGGGACGCTCTGTGAGGAGACTGGATATTCTCCAGAGATCATGGCTAAATGGCAGCTCGTGGGGTACTATCAACAacttattttgttctttctgtTCCCGCTGGTGGTGGTTCTGTATTGCTACATCCGAATCACCATGAGAGTGGTCCAGActaaaatgaaagagaaatgcaGAGCAGTAAAGCTCATATTCATCATTATAGTCACATTCTTCATCTGCTGGACACCCTACAATGTAGTCATCTTTTTAAAAACCCTACAGACATCAGTGAAGCGTACCTCTGATTCATGCAACAATGACATTGACTACGCCATTTATGTCACACAGCAGTTGAAATCCCTGTGA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0006935 chemotaxis biological_process
GO:0070098 chemokine-mediated signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004950 chemokine receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019110 True 906 mRNA 0.44 2 4175475 4176838

Neighbor

gene id symbol gene type direction distance location
AMCG00019105 NA coding downstream 109531 3878696 ~ 4065944 (-)
AMCG00019103 fzd8,fzd8a,LOC106578536,LOC102789550 coding downstream 875389 3298338 ~ 3300086 (-)
AMCG00019102 NA coding downstream 1002039 3171748 ~ 3173436 (-)
AMCG00019098 NA coding downstream 1007345 3150830 ~ 3168130 (-)
AMCG00019097 NA coding downstream 1081279 3077890 ~ 3094196 (-)
AMCG00019108 NA coding upstream 8902 4185740 ~ 4207481 (-)
AMCG00019112 NA coding upstream 192309 4369147 ~ 4383176 (-)
AMCG00019117 NA coding upstream 280622 4457460 ~ 4468048 (-)
AMCG00019116 NA coding upstream 295318 4472156 ~ 4475867 (-)
AMCG00019123 LOC108436082,LOC106579582 coding upstream 590631 4767469 ~ 4791923 (-)
G31471 NA non-coding downstream 179352 3995888 ~ 3996123 (-)
G31470 NA non-coding downstream 239352 3935900 ~ 3936123 (-)
G31454 NA non-coding downstream 537234 3633856 ~ 3638241 (-)
G31444 NA non-coding downstream 572864 3602400 ~ 3602611 (-)
G31431 NA non-coding downstream 830235 3344857 ~ 3345240 (-)
G31516 LOC106599727,LOC103368950 non-coding upstream 155333 4332171 ~ 4332577 (-)
G31517 NA non-coding upstream 158413 4335251 ~ 4335497 (-)
G31518 NA non-coding upstream 164571 4341409 ~ 4341653 (-)
G31519 NA non-coding upstream 173849 4350687 ~ 4350990 (-)
G31520 NA non-coding upstream 176580 4353418 ~ 4353620 (-)
G31130 NA other downstream 1996825 2177980 ~ 2178650 (-)
G31082 NA other downstream 2092204 1932341 ~ 2083271 (-)
AMCG00019059 NA other downstream 2279043 1882454 ~ 1896432 (-)
G31035 NA other downstream 2464932 1705899 ~ 1710543 (-)
AMCG00019034 NA other downstream 2851879 1321614 ~ 1323596 (-)
AMCG00019109 NA other upstream 43605 4220443 ~ 4229991 (-)
AMCG00019129 NA other upstream 755511 4932349 ~ 4940667 (-)
AMCG00019128 gorasp1,LOC103377203 other upstream 764221 4941059 ~ 4986384 (-)
AMCG00019165 NA other upstream 2503787 6680625 ~ 6684301 (-)
AMCG00019209 LOC106600477 other upstream 4670313 8847151 ~ 8901878 (-)

Expression


Co-expression Network