AMCG00019118


Basic Information

Item Value
gene id AMCG00019118
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 4479433 ~ 4491005 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019118
ATGACGTCAGGCCCGGAGTCCCGCCCTGCCGTGCACATGATGGCTGCGGCTGCCGACGGCTGCTACCTGGGCTTGGACTTCAGCACTCAGCAGcTGAAAGTGATTGCTGTTGATCACAATCTGAACGTCATCTATCAGAACAATGTACAGTTTGACGATGAACTTCCTGAATACAAGGTAACAGTGTCTTGTGTCTTGGCCAGGACCCAGGGTGGCGTTCATGTCCATGGTGACAAGCTGACGGTCACCTCCCCCGTGCTGATGTGGGTTCAGGCCCTAGACATTCTGCTTGAAAAGATGAAGAATGCTGGGTTTGATTTCGGACGTGTGAAAGCCTTATCTGGGAGTGGGCAGCAACATGGCAGTGTTTATTGGAGAGCCGGTGCCAGGCAAGTTCTCCAGAACCTTGCGTATGATAAACCTCTACATGAGTTGTTAcagGGTTGCTTTGCAGTGGCAGACAGCCCAGTGTGGATGGACTCCAGTACCACAGAGCAGTGCCAGCTTCTGGAAAAAGCCGCAGGAGGAGCACAAGGCCTGGCTGAGATCACGGGCTCTCGGGCGTACGAGAGGTTCACAGGAAATCAGATCGCTAAGGTTTTCAAGACAAGCCCTGGACTTTACAACGAAACAGAGAAAATCTCCCTGGTGAGCAGTTTCGCTGCTTCCCTTTTCCTCGGGGACTACGCCGCCATCGATTATAGTGATGGTTCAGGGATGAATTTAATGGACATTTTTGCAAAGCAGTGGGCCCAGCCGTGTCTGAGAGCCACAGCACCCCAGCTGGAGGAGAAACTCGGCCCTCTGGTACCTTCCATGACAGTTCTGGGCTCTGTGTCTCCCTACTTCGTCCGGCGCTATGGGTTCTCCCCAGACTGTGGAGTCGTGGCTTTCACGGGGGACAACCCAGgTTCCTTAGCTGGGATGAGACTGCAGGAAGGAGACATTGCTGTGAGTCTTGGGACCAGTGACACTGTCTTCCTCTGGATCCAGGACCCAAAGCCCGCTGTAAAGGGACATATATTCTGTAACCCAGTGACTAGCCAGGCTTTCATGGCTTTGTTATGCTTCAAGAATGGGTCTCTGACGCGCGAGAGGATCAGGAACGAATGCGCCGAAGGATCATGGGAAGAGTTTTCTAAAGCACTTCGGGCGGTTCCTATGGGGAATGAGGGGAACATAGGAATGTATTTTGATGCGATGGAGATTACGCCGGCGGCAGTGGGGGTGCACCGATTCGACAAAGACGACAACAAGGTTGAGGGATTCCCCAAGGAGCGGGAAATTCGAGCCGTGATCGAGGGCCAGTTCCTGGCGAAGAGAGTACATGCCGAGCAGCTGGGCTATAAAATCAGTGAGTTCCCCGCTTCTGTGCACTCCTCTCGGGCTCTGGGCAGGTTGGCTTTGAtatctcccctctcctctcttctctcttcccgTTGA

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function

KEGG:

id description
K00854 xylB, XYLB; xylulokinase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019118 True 1443 mRNA 0.54 15 4479433 4491005

Neighbor

gene id symbol gene type direction distance location
AMCG00019115 NA coding upstream 26997 4438432 ~ 4452436 (+)
AMCG00019114 crygn,LOC102796340 coding upstream 45883 4430896 ~ 4433550 (+)
AMCG00019113 rheb,LOC106579659 coding upstream 55990 4409983 ~ 4423443 (+)
AMCG00019106 NA coding upstream 196681 4268251 ~ 4282752 (+)
AMCG00019107 NA coding upstream 229690 4248393 ~ 4249743 (+)
AMCG00019119 NA coding downstream 29052 4520057 ~ 4551901 (+)
AMCG00019121 acvr2b,actriib,LOC108436077 coding downstream 224957 4715962 ~ 4723781 (+)
AMCG00019120 NA coding downstream 242548 4733553 ~ 4743233 (+)
AMCG00019125 wdr48 coding downstream 421526 4912531 ~ 4930234 (+)
AMCG00019126 NA coding downstream 459022 4950027 ~ 4963233 (+)
G31461 NA non-coding upstream 614829 3864189 ~ 3864604 (+)
G31432 NA non-coding upstream 1090748 3353340 ~ 3388685 (+)
G31430 NA non-coding upstream 1134189 3344755 ~ 3345244 (+)
G31380 NA non-coding upstream 1313761 3139687 ~ 3165672 (+)
G31351 NA non-coding upstream 1402277 3076916 ~ 3077156 (+)
G31566 NA non-coding downstream 256543 4747548 ~ 4747749 (+)
G31622 NA non-coding downstream 481967 4972972 ~ 5030095 (+)
G31663 NA non-coding downstream 602876 5093881 ~ 5127629 (+)
G31690 NA non-coding downstream 686929 5177934 ~ 5183039 (+)
G31799 NA non-coding downstream 1081767 5572772 ~ 5577699 (+)
AMCG00019111 phlpp1,LOC106599727,LOC103135813,LOC101477421,LOC106925929,LOC102225687,LOC103479552 other upstream 111230 4319596 ~ 4368203 (+)
AMCG00019100 crem,crema,LOC105019435,LOC106578540,LOC108428923,LOC103396770 other upstream 1268543 3190612 ~ 3210890 (+)
AMCG00019096 LOC107727496 other upstream 1379262 3094452 ~ 3100171 (+)
AMCG00019089 NA other upstream 1861381 2520104 ~ 2618052 (+)
G31110 NA other upstream 2331870 2141830 ~ 2147563 (+)
AMCG00019154 ghrhrb,LOC107704523,LOC106560417,LOC107717144,LOC107556991 other downstream 1439699 5930704 ~ 5939597 (+)
G32005 NA other downstream 2929496 7420501 ~ 7421083 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other downstream 3854450 8345455 ~ 8384592 (+)
G32286 NA other downstream 4770369 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other downstream 4838474 9329479 ~ 9348819 (+)

Expression


Co-expression Network