AMCG00019120


Basic Information

Item Value
gene id AMCG00019120
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 4733553 ~ 4743233 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019120
CCCCAGGCAAGATGGCGTCCAGAGTGCGCTGGTTTCGCTCCAGGTTTGTGGGGGGGTTCGTCCTGGGCGCCGCTGTGAGCGCGGCCTCATGCGTCACTTGCGTCAAACTGTACCTGCAGGACATCCGGGACACGGAGAGCCCCGAACACAGCGAGGAACCGGCCTACACAGACTTGGGACGGTTTGGGTTTCCTTTGACTGGGGCAGAAATAAGACAATACACCAGCCATGCATTATCCTATGACCAGGTCAAGAGGACACCCAGGTGGGTGGCTGAGCACCTGTCCAAAGAGAAATTATTAGGGAAAGCCGACCGAAAACACTGCAAGTTCAAGCCAGACCCCCGTGTGCCCGCTCTCTTCACAGCGGTGAATGAGGACTACCTGCACAGCGGCTGGTCACGGGGACACATGGCACCTGCAGGCGACAACAAGCATTCAGAGCAGTCCATGATGGAAACATTttacctgtctaatattgtacCACAGAACTTTGAAAACAACGCTGGCTTCTGGAACAGGCTGGAAATGTACTGCAGAGAGCTCACCAAAAGATTTGACGATGTCTGGATTGTTTCAGGGCCTTTAGCTTTGCCTGAGGTGGGGCCTGATGGGAAGAAAACTGTTTCATACAAGGTGATTGGTCAGGACGACGTCGCTGTCCCCACACACCTCTACAAAGTCGTCCTGGTGCAAAGAAACCAGTCGTCCTTTGCACCCCTAGCACTGGGTGCCTTCGTGGTGCCCAACCGCCCGATTGGCTTCGACCACCCTCTCACCCGGTTCCAGGTGGGCCTCGAGGACCTGGAGAAGATCTCGGGCCTGACCTTCTTCCCCAAGCTCGAGCGACCCGTTCAGAGCCTGTGTGAGGCAGACACGTGCCGATTGATGGACTTCAGGGAATTCACGCTGTACATCACGGGCCGCAAGGTGAGCGGCGCCAGGACTCTGCCCAGGCTGGAGAAGTTCATGTCCGAACTGAAGGAGGCCGGGATCGAGCCCGATGACTATCTGCTCCGGCTGTAcgaggagaagaggagggaaCTGGGATCGGCGGCTGCCCGTGAGAGCAAGTCAGGATAATGTTTGGAGAGAAGGGCTTCGTCACATAAGACACCGGAGAATCATTTCAAACCCATTTGAATGTGTCCTCTGAGCATCGAGGGAGTGTCGTTTTTGAGTTATAAATAGGTAAATAGGTTTGTGCTGCAGTTCTCCAGAGTATTGGGGTTGTCGTTGTCTCTACTTTAGACATTTAcctcttttttactttttcttcgTTGCATAATCCAGCTCATTGGGTTTTCCCTGcacttttattaaattgttttaattgtttttagaaAAGGAGCATTGACTAAGAATCGGGAATAGGTGTGATACAGTATGTTCCCCAGTACAGTATGAACTCCTGTCGTTAGTACTTTCCGTAGGAAGGACTCGTTTTGCCTCATTGATTGATCATTTGCATGCATTTGCATTCCCTGTGGGTGGCTGTGCTAACGACACCACAAGCTGTGATGTGCAATCTCTGTGAAAACCAAGGCCACTCAGCTGTGTAGAGCTGCTCAGatgtgctttcaaaacaaacaattcctGCTATTTAGGCTTGTGCATAGAAAAGTTAAACCCAGATGTTTTGTGTGGAAGTTTTTTGCTGTGAAAGTGACGTATTACTCGGTGCTTAAGAAGTTACAGAGCTATGACACTGCCACTGGATTTCCAGGCTAATTGAATTCTTCTaatcaatatgtattacttGGCCTTCACCCTCACAATGGGCAAGACTCTGCTGGATGTGTAGTAATAGGAATCGATATCTCGGCTGAACTCGGGTCCAGGTCACACGTCAGAATAAAGTCTGGGAACAGCAGTTGTTAGGCTGATTAATGGATATCTAAGTGACACTTTGCCAATttgaaagataaatattttacttaaacagACAAATAGCAAACAGATTAGGCCCTAAGGTAGATAACAGCCCACTAACAACAAGATTGTGTTGTTGAGGGGACAGTTGTAAAGCCCTTAAGTCGTTGGATAAAGCAACCAGATATGAAAACAACTTTGGcacatttttgttgtgtgaTGTAGTTCATTTTAATCAATCAGTATGTgcttaattactttttatagggaaagtatataatttttttattcttcttttgtttaaattccTGAATCTCATTTCTTTGAATATGGTTTGGAGGAACCCAAGATGCAAAACTTTCATACATGGAGgacaaaccaaaaatattataaaaatattctgGGCAGAAGTTAATTCTGAGCCAGTCCAAAGTTGAGTGTTTCTGAATGTGATTAGTCTTTACTCTGCTGGAGCAGTGCAAGAAGCATTTTGTAAAACGTTCACAATATGAGGATCTGTTTCTAATGTGTGAGACCTGTAAGAGACATACGTAAACACTTGCACAACAAAGGGAACGTACCAGACATAAATAGGATTTACAGATCGATACGACCTTAAATGACcatattcgttttttttttttatgcccaCATTTCTTTCTGTCAAACTTTCACTTGTACACAAATCCTTTTCCATTGAGTTTGGGTGTGCTTCACTCTCCCTGTGCGCGCTTTGAAACCATTTCCTTCGTAATAACGGTCTTCCCGTGATCATTACCTCATGCTAAGTTGCAGAGATGTAATCAGTTTAAAGGAGATGACCTTGTTTTTGTAGCACAGACCTGCCATTTACCGCTCTCCTGAGAATCTCTCGAACAGATACTTCCTCTGTCGGTGGGTTAATCGAGTTAGAGCGACGTCTTTCTTTTCGGTCTTCGGCAGGGTGGCAGTGACTCAAAGGGAAGTGCACTCGTGATCATGTTTGTTAACCGACTAAATCCTTCCGGAGAAACACCTGGTCGTCTGCTTTCTTTAGTTGCAGGACGTTAGTATTCACTGAATGGGCAATTATCGGTGGCTGCCATCCATACTGTGATCAATGCGTCATTTCCAGCCCATGTTCAGGTTTTTTATGCTGTACAGATTCCTGTGATTTGTGCTTACTGTCGTACTGGAGTCATTTCATGCCATTTCCCTATCTGTGGACATTTCTGAGTTTAATTTGAGTTAAAGGACGGATTGTAACGGTGCCGCCTGTAAAGATATATTAATGTACGTCTCCTGTGTAGCTTGGTAAGGTTTAGTGAGTTGCCTTTATTGATTTGAATGCATCCCCTTATAAATATTGATTGTAGTATGCCTGGGTAAAACCACAGACAAGCTTTGGAAAATGAACGGTGAAGTATAGTGTGCTCCCGGAAAGCAAATACAACTAAATGCATGGTAAAACTAACCTTATTGTGCAACTTTAGTACAACGTTATTGTAGGTAGAGGTAGTCTATATAATCTATATAGAGATAAACCTGTTCATTATAACCATCCCTTGAAATATAAgccaattcatattttacagtgtTCCTTCCTGCCATTTCACGGGGAGAACTCAAAGCTCAGTGTTCGGGAGGTAAACTGGTTATTCCACAATAGTGATGGAGTAAAAGGagagcattttttgtttgtttgtttgttttgttttaaacatttcgACAACAGTAAACCATTTTGTGCCATAAAATGACATCATGTAACATCTTGTGAATTGCATTAAAGAGACTAATGAACTGAAA

Function

GO: NA

KEGG:

id description
K15050 EXOG; nuclease EXOG, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019120 True 3659 mRNA 0.44 6 4733553 4743233

Neighbor

gene id symbol gene type direction distance location
AMCG00019121 acvr2b,actriib,LOC108436077 coding upstream 9772 4715962 ~ 4723781 (+)
AMCG00019119 NA coding upstream 181652 4520057 ~ 4551901 (+)
AMCG00019118 NA coding upstream 242548 4479433 ~ 4491005 (+)
AMCG00019115 NA coding upstream 281117 4438432 ~ 4452436 (+)
AMCG00019114 crygn,LOC102796340 coding upstream 300003 4430896 ~ 4433550 (+)
AMCG00019125 wdr48 coding downstream 169298 4912531 ~ 4930234 (+)
AMCG00019126 NA coding downstream 206794 4950027 ~ 4963233 (+)
AMCG00019127 NA coding downstream 224888 4968121 ~ 4977890 (+)
AMCG00019131 NA coding downstream 382373 5125606 ~ 5139208 (+)
AMCG00019133 LOC103360316 coding downstream 397327 5140560 ~ 5142326 (+)
G31461 NA non-coding upstream 868949 3864189 ~ 3864604 (+)
G31432 NA non-coding upstream 1344868 3353340 ~ 3388685 (+)
G31430 NA non-coding upstream 1388309 3344755 ~ 3345244 (+)
G31380 NA non-coding upstream 1567881 3139687 ~ 3165672 (+)
G31351 NA non-coding upstream 1656397 3076916 ~ 3077156 (+)
G31566 NA non-coding downstream 4315 4747548 ~ 4747749 (+)
G31622 NA non-coding downstream 229739 4972972 ~ 5030095 (+)
G31663 NA non-coding downstream 350648 5093881 ~ 5127629 (+)
G31690 NA non-coding downstream 434701 5177934 ~ 5183039 (+)
G31799 NA non-coding downstream 829539 5572772 ~ 5577699 (+)
AMCG00019111 phlpp1,LOC106599727,LOC103135813,LOC101477421,LOC106925929,LOC102225687,LOC103479552 other upstream 365350 4319596 ~ 4368203 (+)
AMCG00019100 crem,crema,LOC105019435,LOC106578540,LOC108428923,LOC103396770 other upstream 1522663 3190612 ~ 3210890 (+)
AMCG00019096 LOC107727496 other upstream 1633382 3094452 ~ 3100171 (+)
AMCG00019089 NA other upstream 2115501 2520104 ~ 2618052 (+)
G31110 NA other upstream 2585990 2141830 ~ 2147563 (+)
AMCG00019154 ghrhrb,LOC107704523,LOC106560417,LOC107717144,LOC107556991 other downstream 1187471 5930704 ~ 5939597 (+)
G32005 NA other downstream 2677268 7420501 ~ 7421083 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other downstream 3602222 8345455 ~ 8384592 (+)
G32286 NA other downstream 4518141 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other downstream 4586246 9329479 ~ 9348819 (+)

Expression


Co-expression Network