AMCG00019121 (acvr2b,actriib,LOC108436077)


Basic Information

Item Value
gene id AMCG00019121
gene name acvr2b,actriib,LOC108436077
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 4715962 ~ 4723781 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019121
ATGACGCGGCCAGGCCATGGGGAGGCGGAGACCAGAGAGTGCATCTTCTACAACGCCAACTGGGAGCTGGAGAAGACGAACCAGAGTGGCGTGGAGCGCTGCGAGGGCGAGAAGGACAAGCGGCTGCACTGCTATGCTTCCTGGCGCAATAACTCGGGCACCATCGAGCTGGTGAAGAAGGGCTGCTGGTTGGACGACTTCAACTGCTACGACAGacaAGAGTGCGTCGCCACCGAGGAAAACCCCCAAGTCTTTTTCTGCTGCTGTGAGGGGAACTACTGCAATGAGAAATTCATCCATTTACCCGACGTAACTGCAAGTGTGAACATCGAGCCCCCTCCTCCGACGCCGTCGCTGCTCAACATCCTGGTGTACTCCCTGCTTCCGGTCACGGTCCTGTCCATGGCCATGCTGCTGGCCTTCTGGATGTATCGCCACCGCAAACCTCCGTATGGCCACGTCGACCTCAATGAGGATCCAGGTCTGCCCCCCCCTTCGCCTCTGGTAGGCCTGAAACCATTACAGTTACTAGAGATTAAAGCTAGGGGGCGCTTTGGCTGCGTGTGGAAGGCTCAGCTCATGAACGAATACGTGGCTGTGAAGATCTTCCCCATTCAGGACAAGCAGTCTTGGCAGAACGAGCGCGACATCTTCGTGACGCCGGGGATGAAGCACGACAACCTGCTCCGCTACATTGCGGCGGAGAAGCGAGGGACAAACCTGGAGATGGAGCTGTGGCTCATCACGGAGTTTCATGAGAAGGGCTCGCTGACGGACTTCCTGAAAGGCAACGTGGTGAGCTGGAACGAGATGTGTCATATCGCGGAGACCATGGCCCGCGGGCTGGCCTACCTCCACGAGGATGTGCCTCGGTACAAAGGAGAGGGTCCCAAGCCTGCCATTGCACACAGGGACTTCAAGAGTAAGAATGTGATGCTGAAGAATGACCTGACGGCTGTAATAGGAGATTTTGGACTCGCGGTCCGGTTTGAGCCTGGGAAGCCCCCAGGTGACACGCACGGTCAGgTGGGAACGAGGAGATACATGGCCCCTGAGGTGTTAGAGGGGGCCATTAATTTCCAGCGAGACGCCTTTCTGAGAATAGACATGTACGCTGTGGGCCTCGTGCTGTGGGAGCTGGCAACACGGTGCAAAGCTGCTGACGGCCCTGTTGATGAGTATATGTTGCCGTTCGAGGAGGAGATCGGCCAACACCCGTCCCTGGAGGATTTACAGGAAGTGGTTGTCCACAAAAAGATGAGGCCCATATTGAAGGACTGCTGGCTCAAACACGCTGGATTGGCCCAGATGTGCGAGACGATCGAGGAATGCTGGGACCACGACGCGGAGGCCCGTCTGTCAGCAGGGTGTGTCGAGGAGCGCATCTCGCAGATCCGGAGACTGACGAACGGCACTACCTCGGACTGCCTGGTCTCAATGGTGACCTCGGTCACCAATGTGGACTTGCCACCCAAAGAGTCCAGTATCTGA

Function

symbol description
acvr2b Enables growth factor binding activity and protein serine/threonine kinase activity. Involved in several processes, including positive regulation of activin receptor signaling pathway; positive regulation of osteoblast differentiation; and transmembrane receptor protein serine/threonine kinase signaling pathway. Located in cytoplasm. Part of receptor complex. Implicated in visceral heterotaxy.

NR:

description
PREDICTED: activin receptor type-2B

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0001755 neural crest cell migration biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0051216 cartilage development biological_process
GO:0023014 signal transduction by protein phosphorylation biological_process
GO:0006468 protein phosphorylation biological_process
GO:0030902 hindbrain development biological_process
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004702 obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity molecular_function
GO:0005024 transforming growth factor beta-activated receptor activity molecular_function

KEGG:

id description
K13596 ACVR2B; activin receptor type-2B

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019121 True 1491 mRNA 0.57 11 4715962 4723781

Neighbor

gene id symbol gene type direction distance location
AMCG00019119 NA coding upstream 164061 4520057 ~ 4551901 (+)
AMCG00019118 NA coding upstream 224957 4479433 ~ 4491005 (+)
AMCG00019115 NA coding upstream 263526 4438432 ~ 4452436 (+)
AMCG00019114 crygn,LOC102796340 coding upstream 282412 4430896 ~ 4433550 (+)
AMCG00019113 rheb,LOC106579659 coding upstream 292519 4409983 ~ 4423443 (+)
AMCG00019120 NA coding downstream 9772 4733553 ~ 4743233 (+)
AMCG00019125 wdr48 coding downstream 188750 4912531 ~ 4930234 (+)
AMCG00019126 NA coding downstream 226246 4950027 ~ 4963233 (+)
AMCG00019127 NA coding downstream 244340 4968121 ~ 4977890 (+)
AMCG00019131 NA coding downstream 401825 5125606 ~ 5139208 (+)
G31461 NA non-coding upstream 851358 3864189 ~ 3864604 (+)
G31432 NA non-coding upstream 1327277 3353340 ~ 3388685 (+)
G31430 NA non-coding upstream 1370718 3344755 ~ 3345244 (+)
G31380 NA non-coding upstream 1550290 3139687 ~ 3165672 (+)
G31351 NA non-coding upstream 1638806 3076916 ~ 3077156 (+)
G31566 NA non-coding downstream 23767 4747548 ~ 4747749 (+)
G31622 NA non-coding downstream 249191 4972972 ~ 5030095 (+)
G31663 NA non-coding downstream 370100 5093881 ~ 5127629 (+)
G31690 NA non-coding downstream 454153 5177934 ~ 5183039 (+)
G31799 NA non-coding downstream 848991 5572772 ~ 5577699 (+)
AMCG00019111 phlpp1,LOC106599727,LOC103135813,LOC101477421,LOC106925929,LOC102225687,LOC103479552 other upstream 347759 4319596 ~ 4368203 (+)
AMCG00019100 crem,crema,LOC105019435,LOC106578540,LOC108428923,LOC103396770 other upstream 1505072 3190612 ~ 3210890 (+)
AMCG00019096 LOC107727496 other upstream 1615791 3094452 ~ 3100171 (+)
AMCG00019089 NA other upstream 2097910 2520104 ~ 2618052 (+)
G31110 NA other upstream 2568399 2141830 ~ 2147563 (+)
AMCG00019154 ghrhrb,LOC107704523,LOC106560417,LOC107717144,LOC107556991 other downstream 1206923 5930704 ~ 5939597 (+)
G32005 NA other downstream 2696720 7420501 ~ 7421083 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other downstream 3621674 8345455 ~ 8384592 (+)
G32286 NA other downstream 4537593 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other downstream 4605698 9329479 ~ 9348819 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_07316335_07346664 ACVR2A, ACVR2AA coding CI01000009 null 7316335 ~ 7346664 (+)