AMCG00019126


Basic Information

Item Value
gene id AMCG00019126
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 4950027 ~ 4963233 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019126
ATGGCAGAGACGGATCCAACATATCTGgcCTCAATAGCCTACTTCTTCCAGGAGGAACACTACCGCCAAGTCATCAATATCTCAAATGAATACTTACAGAACTACAGTGATCCAGTGTCCCAGTTTTTCAAAGCCTGTGGAATCTTAATGGAAGGTCGTGTCCAAGAAGCACTGAGAGAGCTGGAAAGGGTGAAGGACAAACTGGATATAGCCCTGTGTTGTACTATGGCACTTATCtatgcacacaaacaaagccAAACCATTGATCAAGAGGCTCTGGCGGAACTGGACACTCAGCTGAAGACCAGCAGGAAATCAGCGGGAGAAAAGGCGCTTTATTATGCTGGGATGTTTCTTTGGCTCATGGGGCACAGTGACAAAGCCAAAGACTATGTTGGCAGGATGCTGAAGATATCAAACTCCTCAAGAGAGGGTCTGATACTAAAGGGATGGATAGAGCTTGATTCAGACAAGGAGTATAACAGAAGCAAGTCCATCAAATACTTTGATGACGGCATACAGGACTCCACACATGTGCTGGGCTTGATGGGAAAGGTGAGGTACTTCATTAAAAGACAGAACTTTTCTGGCGCCATTGAAATTGTGAACCAGATCATTGTGGCACAGCCTGGTTTTCTGCCAGCCTTGATCGTTAAGATGAATCTGTTTCTAGCTCAGCAGGACTGGGAGCAAACGATGGAGACGGGTCAAAGAATTCTCCAGAGAGATAAATTCAGCTTAAAAGTCCTTCAGATCATGACAGTGCAAGCTTTAGCGAAGGAGGGCGATTTATCTAAGgGGATGGATTGCTTACAACGGCTTATTAGCGCAGCACAGACGACCGAGCCTTGCAACCCAGCTCTGCATCTCAGTCTGATGAGGCCTGTTAGCAGACTGTGTGGAAACAACAAAGAGATCCTGCAGAAACTATATGACTTTGCCGAGTGTACCTTCAGGCTGGCACCTGCAGATGCCAGGATCGCCAATGAAATCGGTCACCTGCTTGTTCTACAAGAAAGGTTTCCAGAGGCTGCAAAATGGTACTCGAACGCACTCAACCTTGATGGAAGCAGTGTCCCAGCGCTGGCAGGAGTCATAAAATGTCAGCTTTTGGAGGGGAAACTTCTCGAGGCGGAGCAGCAACTGGAATTTCTCAAGGAAGTGAACCAGTCCATTGGCAAGTCAGGGGAGCTGTCACTGCTCCAGGCTATGCAGGTTTTTAAGAGAGGAGCGGGCCAGGAGGCGGTGAGCGCCCTCCTGAAGGAAGCCGCTGAGCTGCACTTCCTGGCCATCGAGGGCCTGCCGCTGGGAGTGGAGTACTTTGAGCGGCTCGACCCCGCCTTCCTCTTTGAGATTGTGAAGATACACCTGGCTTTCTGCCTCAGCAAGCCCAGGTCCCCCAGTCAGCCCCTCTCCTTTGGGTTGAAGCACTCATCTATGATCTTAGATCCCGTGATTAAAACAGCCCCTGGTCTGTTGCCTGCCGCGTTTCTCATGGCCAAAGTGAAGTTTTACTCAGCTCGAGGTTTCTTGACTCGCTGTCTAGAGCTGGATCCCACTATGGCCGATATTCACCTTCTGCAGGCCCAGGTTTACTTCTGTCTGGAGGATTACAAAAAGTGCTTCCAGAGCCTGGAGACAGGAGTGAGCCACAACTTCCAGGTTAGGGAGCTTCCTCTGTACCATCTCATCAAAGCCAGGGCCCTCAAGAAGACTGGCAGCCTCCCAGAAGCCATCCAGACCCTGAAGATGGCCATGGGCCTGCTCGGGGTGCGTAGAGGAGCCAAGGGGAAAGACGCCGCCATCAGCATGAGTGACCGAGTTTCCGTGTATCTGGAGCTGGCCGAGGCTCTGCGTCTGAACGGGGAACAGCATGAAGCTACAAAGATTATGCAGGACGCCATTGTGAACTTTGCAGGAACTCCCGAAGAGATCCGTATTACTGTCGCCAATGTGGACTTGGCTCTGGCCAAAGATGACACAGAGACAGCATTGGCCATGCTTCGAAATATCAATCCCAGTCAGCAGTATTACAGCGAGGCTAGAGAGAAGATGGCCGCAATTTACCTTGAGAAACGTAAAGATAAACAACTATACATAGCCTGCTACAGGGAATTATGTGAGGACGAACCAGGTCCCCATACTAGTCTCCTCCTTGGGGACGCTTACATGAAAATACAGGAGCCCGAAAAAGCCATCGAAGTGTATGAAGAGGCACTGAAGAGGAACAAGAGAGATGCGACTCTGGCAAGCAAGATAGGGCAAGCTTTTGTAAAAACCCACCAATATAACAAGGCTTATGATATTCAGATAAGAATCCTGAAACGGCTTCCACTAGAGCAACCAGACATATTACCAGCGCAGCGACACGTGGCGGCTGAGATCTGCAGGCACGTTGCCCAGCTGTACCAAGAGCAGGGCGACTTCGAGAAGGCAGTGAAGTCCTATAAGGAAGCTCTGTCTTTCTCTGATGGAGATAGCAAAGTGATGCTTGAGCTGGCACACATATACCTGGAGCAAGGAGATGTGGACGGATGTCAGCATCAGTGCGAGATGCTGCTCCAAACAGACCAGGACAGTGAAGACGCAGCTATGGTAATGGCAGGTGTGATGTTCAGAAGACAGGAGTTTGAGAAatcaacactgcactgcacacagctGATGGAACGGTCTCCAGGTAACTTCGGTGTCCTGGCTCGGGTCATTGACTTGCTGAGGAGGACTGGCAAACTCGATAATGCGCCGACCTACCTGGCCATGTCAGAAAATCACTCTAGCAGGGCAGCGATGGAACCAGGGTACAATTACTGCAAAGGCCTTTACCTGTGGCATATGGGGCAGCCCAATGAGGCTCTGAAGCATTTCAACAAGGCCCGTAAAGACACCGACTGGGGTGAAAAAGCCGTTTTCAACATGATTCAGATATGCCTCAATCCTGACAATGAAACGATAGGAGGGGAAGTGTTTACAGCTTCTGACGAGGAGACCAGCAGCAACACCAGCTATGAAAAGGAAAGGAGGGAATTAGGGCAGCTGGCAGTGAGGACGGCAGAGAATCTACTGAGGGAGTATCATCCTCGAACGAACCTGGGGCGGGCGCAACTGATGCTGCTGAAGAATCGCTGCTTGCTGGCATCCAAGGACCCCAAGCAAGTGGAGACGGCCCTCCTCGCCTTCACTGGAATGGCGGCATCGGAGCTGAAGAGGCTTTCCAAGATGGAGTGGACTGAGACCAACGCCGAAGAACTGGAAAAGGGTTGGCTGCTTCTGTCCGACATTTATATCAGCGCCGGCAAATACGACATCGCAACAGACCTGCTGAAAAGGTGCTTGCTCTACAATAAGTCCTGCTGTAAAGCGTTTGAATACCTGGGTTTTATCATGGAGAACGAGCAGTCATACAAGGATGCTGCAACTTACTACGAACTGGCCTGGAAATACAGCAACCAGATGAACCCGGCCATTGGTTTTAGGCTTGCTTTTAATTACCTGAAAGACAAGAAATACCCTGAAGCCATCGATGTTTGCCACAag

Function

GO: NA

KEGG:

id description
K24178 TTC21A, IFT139A; tetratricopeptide repeat protein 21A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019126 True 3534 mRNA 0.50 26 4950027 4963233

Neighbor

gene id symbol gene type direction distance location
AMCG00019125 wdr48 coding upstream 19793 4912531 ~ 4930234 (+)
AMCG00019120 NA coding upstream 206794 4733553 ~ 4743233 (+)
AMCG00019121 acvr2b,actriib,LOC108436077 coding upstream 226246 4715962 ~ 4723781 (+)
AMCG00019119 NA coding upstream 398126 4520057 ~ 4551901 (+)
AMCG00019118 NA coding upstream 459022 4479433 ~ 4491005 (+)
AMCG00019127 NA coding downstream 4888 4968121 ~ 4977890 (+)
AMCG00019131 NA coding downstream 162373 5125606 ~ 5139208 (+)
AMCG00019133 LOC103360316 coding downstream 177327 5140560 ~ 5142326 (+)
AMCG00019132 NA coding downstream 184482 5147715 ~ 5152017 (+)
AMCG00019141 NA coding downstream 318065 5281298 ~ 5305514 (+)
G31566 NA non-coding upstream 202278 4747548 ~ 4747749 (+)
G31461 NA non-coding upstream 1085423 3864189 ~ 3864604 (+)
G31432 NA non-coding upstream 1561342 3353340 ~ 3388685 (+)
G31430 NA non-coding upstream 1604783 3344755 ~ 3345244 (+)
G31380 NA non-coding upstream 1784355 3139687 ~ 3165672 (+)
G31622 NA non-coding downstream 9739 4972972 ~ 5030095 (+)
G31663 NA non-coding downstream 130648 5093881 ~ 5127629 (+)
G31690 NA non-coding downstream 214701 5177934 ~ 5183039 (+)
G31799 NA non-coding downstream 609539 5572772 ~ 5577699 (+)
G31820 NA non-coding downstream 786584 5749817 ~ 5750063 (+)
AMCG00019111 phlpp1,LOC106599727,LOC103135813,LOC101477421,LOC106925929,LOC102225687,LOC103479552 other upstream 581824 4319596 ~ 4368203 (+)
AMCG00019100 crem,crema,LOC105019435,LOC106578540,LOC108428923,LOC103396770 other upstream 1739137 3190612 ~ 3210890 (+)
AMCG00019096 LOC107727496 other upstream 1849856 3094452 ~ 3100171 (+)
AMCG00019089 NA other upstream 2331975 2520104 ~ 2618052 (+)
G31110 NA other upstream 2802464 2141830 ~ 2147563 (+)
AMCG00019154 ghrhrb,LOC107704523,LOC106560417,LOC107717144,LOC107556991 other downstream 967471 5930704 ~ 5939597 (+)
G32005 NA other downstream 2457268 7420501 ~ 7421083 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other downstream 3382222 8345455 ~ 8384592 (+)
G32286 NA other downstream 4298141 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other downstream 4366246 9329479 ~ 9348819 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location