AMCG00019128 (gorasp1,LOC103377203)


Basic Information

Item Value
gene id AMCG00019128
gene name gorasp1,LOC103377203
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 4941059 ~ 4986384 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019128
CTGCCCGGTGCCCTCTGCGCTCGGCTGCTCCGGCCTGGCAGAGTGAGTGCAGTCAATATGGCTACAGAGCGATAGATCCTGCTTCCCTGTTTCTTTGCTGACTGTATTAAAGTGCGCCGTGTGCAGGCAGGCCGGAGAGATGGGGTTGTCACAGAGCTCGGACGTGCCTGACGGAGGGACGGACGGCTACCACGTACACGGGGTTCAGGAAAACTCTCCAGCAGAGAAAGCTGGACTGGAACCCTTTTTCGATTTCATAATTTCAATAGGAAACACACGACTGAATAAAGAGAATGACATGCTGAAGGACCTCCTCAAGGCCAACGTGGAGAAGCCGGTGAAACTCGAAGTCTTCAATACTAAAGCCATGAAAGTCCGGGAGGTGGAGGTCATTCCCAGTAACATGTGGGGCGGACAGGGCCTGCTGGGAGCCAGCGTGAGGTTCTGCAGTTTCCAGGGAGCCAACGAAAACGTGTGGCATGTCCTGGACGTTGATCCCAATTCACCTGCGGCGCTGGCGGGGTTACAGGCACACGCAGACTTCATCGTAGGAGCTGATCAGGTGCTGCAAGATTCAGAAGATTTCTTCTCCTTGATTGAGTCGCACGAGGGCAAGCCGCTGAAGCTGCTGGTGTACAACACCAAGACCGACCTGTGCCGAGAGGTGGTGGTCACCCCCAATGGGGCCTGGGGTGGGGAAGGAAGCTTAGGGTGTGGCATCGGCTACGGCTACCTGCATCGCATCCCCGGGAGACCAGTCACACCGAAGATGGGTGAACTCAAGCCCCCGTCGCCACTGCCTGAAGACAGCGCTCGCCTGGAGGTGCCCAGCAATGGCTACACTGAGGTTCCTCTGATGGCTCCTTCCATTGAGGCAGGGAAGAGTGAGGCGGACGAGGGCCCGGCCCGGCTGAGCTCAGGTCACATGATGGAGGACTCCCCTCTGCCACCGCCCATTCAGAGGGTCATGGATCCagGCTTTACTGATCTGTCTGGGGCGCCGTTCCCAGAGCTCGCAGACCTGAGCCAGAGTCTGGATCTGTCTCTGCCTCCCATTGACATGGCTGACCCCTCCCTGCTTATGGACGACAGGGCTGCCTGGAGTCAGGAGAACGGATCTGCTTTTGACGAGTTCAGGACCGAGCTGCCCGCTATCACAGAAGACCTCCTGGAGTATGACATTAAGGAGCTCGGAGTGGAGCCCATGGACGACTCCATCTCCCTACAGCCCCCCGACCTCCACCCGGGAGAGAGTGACAGTCCGGAGGCCACCGGTGCTGCTCTGCCCGAGGCCCGGGACGTGCTGGCGCAGACGGGCGCTCCTCTCGAGTGGGACATGGTGCCCAAGGAGGAACGCACGGCTGCTGCGGAGAGCGGGCCGCAGTAGGGGGTCTCTGGACCTCACCAAACCGATTTTAACTACTGAGATGCTCACTCATGCGATGACGTTTAAGATCCCTCCTTATAGGTCACTTTAAACCAGCAGCAGTGCAGTTTTGGATGTGACGGTCCAGAGGTTTTAGGGGGGgttgaaaaatgcaaatgcgATTGCATTTGCCGAAATTACAgtgaaacaaaagtaaaacactgAAAGAGGAGGAACTTCCTTCAAGATGAAAAGCActatcaatatattattattattacagttatcCAGAAGTATatacatcattattttacattgtgttgttacatttgtttttctagtgTCAATACACTTACTATTTCACTACTACAACTCCAAGAGGCCCAAGACACGATTTAAAGGCCCCTCGACACACACTGatgatatatactgtatatgtgacCGAGTCTCTTTCTCTCCCGCATGTACATTTACTCGCCCACATGTTATTCTGGTGCCTTTTCACCGTTTTTGGGACCCTGGAAAACTAAATCTATCCCATGAACGGTGAATTCGGTGTCGCAGAAACCAATGGCGTCTGGTTTACAATAATCTCATATGACCCAGGCCTtagatttctattttttttaattattggagaaatattttttcagtctTATCTCTACCTATGCAATATGTCAGTCTGTTGGCACCATATATANNNNNNNNNNatcctttaggtgagtgtatatatatatggag
>TU39592
taataatcctttaggtgagtgtatatatatatggagacTTTCTCCTCAGAAGGACAAAACATTAACTCACTGCACTGCTTTTTGGTTGACATGTTTTACAATCAGATAAACTAGTTATCCATATTGGGGAGACATTTTAAACCCACAGTTTTGTGATCACTACCTGGGTAGTTACAAGTTGACACTTTTTGTCAGGAAATTGTTGCAAATTCGGCACAGTCTGAAATTTTCCCTGTGTATAAATTGTTACAGGCAGCTAAAGGCGGCATTTTAAGCTTCATTGCATCAATGTTTGAGTTTCCCTGGTACATCAGCTTCCAGTACCTCACATTAGCAAAGCCAAAGCTCTGGACACTAATAACAGAAATCGAAACTAACTTTTTAAGGGTCTTTATATGGTGTCATCCTCTTATTAGAATAGTCATGTCCTGTATTCTGTGTGTCTTCTGGGATTGAATCAcagtgaaattatatttttttagcctttccaatccatgtttttATCATCGTTTTCTGAAGGGAcagatttgctttaaaatattggCATTACTTTTTTGACTCATCCCCTTTATAAGTAGTCTGACAAAGAAATCTCTtgattgtcattttatttatttatttatttgaaatacgtGAAATCTTCGGGGTAATTTGTAGAGATTCAGAAATGATTTTACAGTGTATGGGAACTGTTTTGTCTTGCGTTTCTCATTGTTGAACTGAAAGATGAAGATTATGCTCGATACGGGTGTGCTCTGTGAATCTTTTGCATGCGTCGGACAAGTACAGAGGCAAGAAGCTGCAAAACATGAGAccattttttcttcaatcacttttttataaattataaccCCATTCAAGGGAAAAGATAAACCTgctcttatttaaaaaataatttcgAAATAACCGTCGGTGAAATTCACATTtgatcattaaaaacataaatgatgtAGGTTTAGATGTTTCAGAtaattttatattcaatttttACTCcttaaaacatgaatgcatttcagattaattcAGCATTAGAGTTGTGGCTGGCTTAATTGATAAATTAGTACTACTTCCATGTGTTAATGCACAAGAATTGACTTAAGTAATGACTCAGTCATATATATAGTACTGAAgttaatggaaaatattttaccttcatttttaaatctgaaagatAGCTTGGCACAGAAATGATAAACAGGCTAAAGgatatttcttttgttttgctgatcCACGTTTAGACGCCActagatttttgtttaaaatttagGATAGGTTGCACTGTTTGGaaaaatattgtgttatttaacaACACCTGTTTCTTTAACtttaatgatttttcttttcagttttcaaatccTGATGAGTTAAACTCACAGCTTCTAAATCTAATGCTAATACGAAAACATGCATCCTTGACCCTGCTTTTTATGTCTGAGTTGCTAGAGAAAAACCTTCTTTCGAGCCATTGTCTGATGGATTTGCTGGAAGGTGTAATTTCTCCAAAAGCTGTCAGAGACTCCGACAGACAGCAGCTTCAATCAAAGGAAAACCACAGGAAACTAACTTAAACAGTAGAGGAAACACATGGTTAGATACATCTCTGTGCTATATTGTTGCGGTCTCTGTTCCTCTTTATATTCCTCATTTTATTCTGATACAGATAATACTTACTCACAATAAGTACCATTTCCACTCGGGAGTGTTTTTCCAAGTTCTCAGAAATTACTCCAAACAATCCTGGTTGGTGAATAGCatctttttcttgtttgcagttttctgtACTTCTGtctagaaaatatatttaccttTATGGACTATGAGAATAacttttagtttagtttttgcaCATGAAATGGTATATATTGTGTTGCACTAAACCCTCGGATTACACAGATTCTCTTCCTGGTACTGTACAGACCTCTCCAACTGTTTGTATAAACTATTTCATAGGCCATACGCGTGTATGATAAAATCTTGAGTAAATCCAAGATACAACGTGCTTTCCTGATGAAAGTTGCTATGCACAAGAGTCATATGTACTATAGATGATGGGACTGTTAAGGATTTTTATTAGACATCAGAAGACAAATACAGAATGTTTTATTCTCTtccaattaatatttcatgttattgtttACAAGACCATTACAGtgtaaaaaaacatagaaatactatctgatttagtttattttgggGTGATGGGGGTCTATGCAATTACTGGTAAAGACAAAGGTATCCGTTCTTCAGTGTGGAAGATTGCAGCTTGCAGTCTGCATTCCCTGCGCAGTGAGATGATGCAGACGACAGCTCTGCTGCCCTTTTCCAAAAACATGTTAATCATTGTTTCCCTTCTTCTGGTTCtctctttgtattttaatacagattAGAATAAATTTACATACTCTATCCataatgttttctgtaaatcTAATTTGTCGCTGCTTGATAGTAGATTTAACAATCTagcaggattttgtttttttaaatgtagattttcttttaagGCAACATATGGTTGTTTGGAAGTCAAAGAAACTGGGTGTGAAAGTAACACTGAATggatttttattatcatttttttaaaatatatttaagttaattttgGGATGCAGGGTGTGTCTGCTTTGTAGGTTTTGAAACAGACTAAGAGATGCATTGGGACTTTTGGTAATGTAGCGATCTAAccttacacaaataaaacacaaagcattaaAA

Function

symbol description
gorasp1 Predicted to enable metal ion binding activity. Involved in establishment of protein localization to plasma membrane and negative regulation of dendrite morphogenesis. Located in Golgi apparatus.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019128 False 2107 mRNA 0.52 9 4943738 4949388
TU39592 True 2715 lncRNA 0.34 2 4941059 4986384

Neighbor

gene id symbol gene type direction distance location
AMCG00019124 NA coding downstream 65714 4857920 ~ 4875345 (-)
AMCG00019122 NA coding downstream 100363 4823949 ~ 4840696 (-)
AMCG00019123 LOC108436082,LOC106579582 coding downstream 149136 4767469 ~ 4791923 (-)
AMCG00019116 NA coding downstream 465192 4472156 ~ 4475867 (-)
AMCG00019117 NA coding downstream 473011 4457460 ~ 4468048 (-)
AMCG00019130 NA coding upstream 3339 4989723 ~ 5006444 (-)
AMCG00019137 NA coding upstream 185236 5171620 ~ 5176944 (-)
AMCG00019134 oxsr1,LOC107689410,LOC107695388,LOC107591273 coding upstream 191509 5177893 ~ 5202366 (-)
AMCG00019138 NA coding upstream 250017 5236401 ~ 5243714 (-)
AMCG00019135 myd88,LOC104955770 coding upstream 275331 5261715 ~ 5267644 (-)
G31572 NA non-coding downstream 262992 4677643 ~ 4678067 (-)
G31558 NA non-coding downstream 333202 4607563 ~ 4607857 (-)
G31526 LOC106599727,LOC106569160,LOC102785278 non-coding downstream 575658 4365162 ~ 4365401 (-)
G31525 NA non-coding downstream 576015 4364196 ~ 4365044 (-)
G31523 NA non-coding downstream 580713 4360107 ~ 4360346 (-)
G31774 NA non-coding upstream 432612 5418996 ~ 5511930 (-)
G31784 gars,LOC107591252,LOC107754935,LOC107682953,LOC107584992,LOC107733158 non-coding upstream 553736 5540120 ~ 5540948 (-)
G31803 NA non-coding upstream 586413 5572797 ~ 5574265 (-)
G31825 NA non-coding upstream 763503 5749887 ~ 5752086 (-)
G31826 NA non-coding upstream 798384 5784768 ~ 5802915 (-)
AMCG00019129 NA other downstream 392 4932349 ~ 4940667 (-)
AMCG00019109 NA other downstream 711068 4220443 ~ 4229991 (-)
G31130 NA other downstream 2762409 2177980 ~ 2178650 (-)
G31082 NA other downstream 2857788 1932341 ~ 2083271 (-)
AMCG00019059 NA other downstream 3044627 1882454 ~ 1896432 (-)
AMCG00019165 NA other upstream 1694241 6680625 ~ 6684301 (-)
AMCG00019209 LOC106600477 other upstream 3860767 8847151 ~ 8901878 (-)
AMCG00019213 NA other upstream 4264768 9251152 ~ 9434114 (-)
AMCG00019272 ppp4r1,LOC106579644,LOC106590337 other upstream 6865724 11852108 ~ 11885571 (-)
AMCG00019284 NA other upstream 7426770 12413154 ~ 12423320 (-)

Expression


Co-expression Network