AMCG00019131


Basic Information

Item Value
gene id AMCG00019131
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 5125606 ~ 5139208 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019131
GAGTGAGGCATCCGAGCATTAGACAACACCGGAGCAGCCGAGGGCTACAGGGACTCAGTTCATTCATACAAAACAGCAAACACAAGGAATTCCTCATATCTCTGAGAGAAGAGGTTGTCGCTTTTGGATCTGAGAGAGACCCCCTCTGCTGGGACCCAAGGACAAGAGAAATCCTTGGCTTCTGTGAAAGAAAGATCTGCTCTCTATCTGTCAAGAGTAGCAGCTGCAGACGCACCAGGCAGCCCCGCAAAAGCAGTTACTTTGCCACAAGAGAGTGTTGCACTTCCAGGAAACACATCTAAAGCAAGCAAGGATGGCAGATACAACCAAACAGATAAAAGTTTCAGAAGCATCAAACGGGGCCCATCTGGAAGAAGATTTACCTCCCCCACCACCATCTGCTCAACAGGAACTTATACCGGCAACTGGAGATCAAAGCCCCTCATTCATACCTGTGCCTCCACCGAAAGAGACCTTCACTACTTTCTATCACCAGCGACAGAAAAACGAACTGAAAAGACTCTACAGACACATGCACCCCGAGCTGAGGAAAAACTTGGAGCATGTTGTGAACGAGGAGCTAGTGGAAGTGCTGAGCTCAGAAGACACACAGCTGGCCGCGGACGCTGGATATCAGGGAGAGGTCCAGTCCATGCGCTGGATTTTTGAGAATTGGACACTGGACTCCATTGGGGATCCTCATGCCACTAGAAAGACTGTGGATGAGGAAGCTGTCACTGGGGGCAATGTTAGAAGCACCTCCTCCGTGTTCGAGCAACAGGGTGCAGACCGGTCTCAGCTGCCCGGCTCCATGGAGGCAAGTGAGAGAGATCAAGTACGAGGAGACGTGCACACAGCCACGTGGCTGTTCGAGACACAGCCTTTGGACTCCTTAAACAAAATCTACCCCGAGGAAGGAGAACTGGTGGAGGCCGTGCTGAAAGAGCCAGTCCACCATGGGGACGTGACAGGTGCTCGACGTCTATTCGAGTCCTACCCATTGGACTCGCTGGGGCGCTGCAGCTCCGTGGAAGATTTCAGCCTGATGAAGCTGAAGTCTGAAATCCAGGAACAGAGAGGGGACATCCAAAAAACAGTGAAGCTCTTTCAGACGGAGCCTTGCTGCGCAATACGGGACGGCACGGGGGCCATTCACGAAATCAAGTCCATTTGCCGAGAGGAGATCGAGAGCAATGCTGTGAAGACCGCACGCTGGCTGTTTGAAACCCAGCCCTTAGATGTGATCAATAGGAAGGGCTCAGCCATTCAGATTATTCGAGGCATCTCTTTGGAAGAGGCGCAAAAGGGTGGGGTTGATAAGAAGAGATGGATGTTTGAGACTCAGCCCTTGGACACCATTCATGAAAGCATTCAAGTAGATCAATTCCAAGCCGCCACAGATGTAGTGGAGGGGGCTGATGTTACAAACAAATGCCAACTCTTTGAAACCCAGACACTCACGTCACTGAAAGGAGAGTCTTCAGAAGAAGCATCGACTAAGGAAGAGATAGTCAAAGGGGATGTGAAGTCCACACTTTGGTTGTTTGAAACACAGCCCATGGAAACCCTGAAGGACAACTATGAAGTCAGTTGTTTAAAGAAAGTTACCGTCACCGAGGAAGAGAGGGGAACGGTGCAGAACAGAAGGAATGTCTTTGAGACACACACCCTAGATAGCATTAACAAGGAGACATCTGAAGAGGAGATAACAAGTGGCATTCATGAGATAGAGAAGGGTGATGTTAAATCTTTTAAGCAACTTTTTGAAACCATTCCTCTGGGGAATATTTCACGTTCGGAAAATGAACCTGTAGAGAAGTCTGATGAGGTGGTGACTGGCAACGTGAAGAGTAACAGGGCAATGTTTGAGACCATGCCCTTGTACGCCATTAAGGACTGCTCAGGAAATTACCATGAGGTGACCACCGTAAGCAGGGAGCAGATTGTAAATGGAAATGTCCAAAACTACAAGTGGATGTTTGAAACTAGACCTTTAGATCAGTTTGAGGAGGGAAAAAGGAATGTTGAGATCATCAAAGGCATTACCAGGCAAGAAGATCAGGCTGCGGATGTCAAAACGGCCAAATGGCTTTTTGAAACACAGCCACTGGATACCATTCATTCACAAGTCAATGAGACAGAGGTGCATTCGTCAGTGCAAAAGGAAGTCTTGCAACAGGGGGATGTCAAGACATGCAAATGGCTATTTGAAACACAACCTATGgacattttatatgaaaaatctgaaaagaaacCAGAAGAAGAATTCATACCAAAGACTGATGTGAAATCCCACACCTGGCTCTTTGAGACACAACCACTGGATACCATAAAAGAGTCAAATGAGCCTTATCTGAAATTATGCAGTGTCAGTCAAGATGATGTGAAGACTGTTGATGTGAAAACAGTACGCCATGTCTTTGAGACAGAATCTTTAGACAACATCACCACAGAATCAGACACAGAGCAAGATGTTAGATATGTGAGTAAGGTTGATATCCAGTCAGGAGATGTTTCTAGGGTCAAAGAAATCTTTGAAACAAAGTCCCTTGATGAAATAGGAACAGCTTCTGTAAAGATCTCTGAAGAGGTGGACCAACATGAAAATATCCAGGTGGGATCTGTCCACAAGTTTACCTGGCTTTTTGAAAACCGCCTCACTGAAGCCAATAAAGGTCATGATGAGAGCAGAGTAACAACAACATGCACAGCGAGAGACGTTAAAGGGGGCGACGTTGGaaacaaaaagtttatttttgagACTTTTTCTCTGGACCAGATCCACGAGGAAGACAAATCACTCGAGTGCACGTCTGTTTCTGATGTGGAGCCTACTAGCAAAGGAGATGTCAAGTCTTGCACGATGCTGTTTGAAACACAGCCTTTGTATGCCATCAGAGACAAAGATGGACAATTTCATGAAGTCACCACTgtcaaaaaagaagaaatcatGAGTGCAGATGTGAGAGGGGCCAGATGGATGTTTGAAACAAAGCCCCTGGACACTATAAAGCCACAGGATGAGATTTTCGTAATCCGTGCTGTCACACAGGAGGATGTTCTCAAGGGCGATGTGAAAACAGCTCGTTGGAGGTTCGAAACGCAGCCACTGGATTCTCTCACAAGCAAAGAAGATCCCAAGACAAGACCCATAGAAGAGGTCCAAAGGGGTGATGTGAAGTTAAACAAGCAACTCTTCGAATCTCAGGAGGTGTCCCGTAAGAAGTGTGTGAGGATGGTGAGCGTCACAGATGTTCAGCAAGGCGATGTCAGGACTTCCACCTGGCTTTTTGAGAATCAACCAATCGACTCATTGAAGGGGGAGCTCCAAGAGAATGTCTCAGTACAGACTGTGCACAGAGAGGACAATCAAAAGGGGGACGTGAAGAGATGCACCTGGTTATTTGAAACACAGCCACTGGATGCTCTCAAGGAGCCTGGGTCTTCAACTTGCAGTAAAGTCCCAGAGGAAATGCCCCAGACAGATGTAAAGAGTACAACCTGGCTATTCGAGTCAACACCACTTGATAAACTCAGTTACCAAAGCACAGCAGAGACTGAGACCATGGTGGAGAGTGTGAAAGAGACCCTGTACCGCCTACACCACTTTAATGCCATCCATTCCCATGGTATCGCAATTGAAGCCAATGAGATGAGAAGTGTAACAATGGCAAAATATCAACTAGTAAGTACCGGGCCAGAAATTCAGAAGGAAGAGGTTGTTGAAGGGAACATCAAGGGAATCATGCTCCAGCTGTTGCAGAGGACAAATGTCAAACCCCAGGGTGTTCTTTTAAAAGAAGATGAGCAAGGGAACGTGCAAGTCACTCAACTGAAGTTAACTGTGGACTTGCCATCATCCCAGGTGGCTGCGAGCAAAGAGCACTCAAAGGCTGATGTGGCTCAAGCGATTGAAAGCCTTCTGAACCAGGacaagtctttgaggaaaggcATCTTAATTCAAGAAACTGAAAGGGGGTATGCTGAAATGACAGTTTACTCTCTCTTCAGTCATTTCGAGAGGCAGGAGGTCGTCAAAGGAGATGTGAAATCGACCATTGGTTGTCTTCTAGCTTCTGCCAAAGACCAAAGAACTGTGGCCTCATGCAGGCTGGAGCAAAATGAAAAAGGGAATGTTCATCTGTATAAGAGTTGCATCGAGAAGGGAGATCTTCAGTTCTTAAAAAGCCTTCAGGCAGATCCAGTGGAAGATGAGACTGATTCTTCCCCCAAGGAACAGATAGAGATTGTTCAAGGAGATGTGCAGGGAGCAAAAAGACATCTTAACCAACACAAGGAGCTGACTGAGCGAACAGTAGTGGACATTGTGCCCGGCGATGTGAAGAATGTCAAAAAAGTATTCTCGTGTGAAAGTGCCATGGACCAGAGCAGTGtacaaaaagaagaaatcaTCTGTGGAGATATATCTTCTGCTAAACAGTCACTTGGTCAGGCTATTAATCAACCAATTGTTGTGGAGAAAGAGGAAATAGTTTCAGGAGACATCAAGGCAACGTTGCAGGCTCTTGAACGGGCAAAGAATCAGAGCATGCAGTTAGAACGAGAAACCATTGTTCCCGGAACAATTTATGACTTAAATGTTACAATGCAGGAAACAACTGCTTCCACTGACACACAGGAAACGGAAAGTAGGTTAGCAGAAAAGGTATGTTCTGAACGACAGGAAACAGAGAAGGTCAGTCAAGCAGAAACAGGTGTACAGAGGGGAGCTCAAGAGATGTCTGATCTTCAAGCAGCAATGCAAAGCCTCAAACAGGCCACGGCCGAAGCACAAACCATCCAGAAAGTTGTGCAAGGGAAGCAGCAAACCATTACTCGAGGACAGGTGGAGCAGGAAAGACGAGTCGTTACTCAGAAGACCATTGGTATCCAGCAATCGAGGACCGTGCAGTCATCTATGCAGACTAATGTGCAAAGGAAGGAAACTGCTTGCGTTGCCAGAATAAAGGAATCAGCATCATCTTCAACAAGCCAGCAGAAGATTACATCAGTGCATCAAAAGGCCAAAAGCCATAGCCCGTCTGTGGAAGTCAGCTTCAACCGCAGCAGTGAGGAAGACAATCTCGCTCAGCCTGAAAACAAAGTTGTTCTCAGGCAGAAGAAAGTcagaagagagacagaaaatgaGCGTCGAGAAAGGCTATCAGTCCACAAGGATGAAATCATGAGAGGCAACGTACAAGCAGCGATGGACATTTTTGAAAACCTGAGGAAACGAGAGCAACTGCAAATCATTCTCTCAAAAGTGGAACAGATCGAAGGGGAGACATGCAAAGTCGACGTAAGATCCCTGAAGactttgtttgaaaatgttccCGAATGGATTGTTGCTCCGGGCAAGAATAAAACGTTTCCTAAGCCTAAAGGGGAAGTGAAAGTTGACAGGACAGAATCGCTGAGAGATGAAACTGAAAGTATGTCCTCTGTGGAGGTCGTGTTTGGGGATCTGGAAAGAGCGAGTGAAGAAATAATGAATTTGAAAGAACAGACTTTGGCTAGGCTTATGGATATTGAAGAAGCGATAAAGAAAGCTTTGTATTCCGTTTCTAATTTGAAATCGGAGTCTGACATTGCTGGACTGTCCGGGCTGTTTAAAGAATCCCTTGGAACCGAGCAGAGCACGGGCAGCAACAACATCAGAAAAATCTGCATCGCGTCCAGCAAAGCCAAAATGGAGACCGGGGGTGCACATACAAATGAGGATGCTGTGTCAGAAAAAGTGCAAAAGCCAGGTCTAGAGATCCCAGTTATCAAACCACGGGCTAGCTCACCTTCTTCCCCTTCCTACATCTCCATCCAGTCTGCTGCAAGAAAACCTACCGAGCTCCCCAAGGATGAGCAGCCCTCGTCAGCCGCTCCCGAGAAGGGTGCCGTGGCCCATTCGCAAAGCCACCGGGTGAACCCCAGCCCGTTGCCGCGCGAGTCTAAAAAACCAACGGGAAGCCCCGAGAGCTCTCGGGGCCCAACCGAAGAACTCAACACACATTCCCTGCAGCAAGAGACCCTCAACAGCATCTGTAGTCCTCTCAGCCAGAGAAGGCAAAAAAGCGTGCTGGAGGTAAAGACCGTCCCCGAACCGGCTGGGATAGTCGGCACAAAAACCGTGACCGAGAAATACGAGGAGACCGACTGCTTCGGGAACAGGTTCATATCTTCCAAGACGTCGACGATTGTGACCAAGCAGTCGGAAACGAAAACGTCTTCCACTTACGAGGTGGTGGCCAGCCCGACGAAATATGACATGATGGCGTCCCCGCTTGTAAAAAGACCCGTTCACCCCTTCTCAGAGAGTGCTCAGTCCAATTGCAAAGTCAATGAAGGTGGAGCAGTTTTTGTGACATTTGGCCACCcgaaaaatggaaaaaaataa

Function

GO:

id name namespace
GO:0006099 tricarboxylic acid cycle biological_process
GO:0006101 citrate metabolic process biological_process
GO:0009060 aerobic respiration biological_process
GO:0015980 energy derivation by oxidation of organic compounds biological_process
GO:0045333 cellular respiration biological_process

KEGG:

id description
ko00020 Citrate cycle (TCA cycle)
ko00190 Oxidative phosphorylation
ko04714 Thermogenesis
ko05012 Parkinson disease
ko05016 Huntington disease

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019131 True 6391 mRNA 0.47 5 5125606 5139208

Neighbor

gene id symbol gene type direction distance location
AMCG00019127 NA coding upstream 147716 4968121 ~ 4977890 (+)
AMCG00019126 NA coding upstream 162373 4950027 ~ 4963233 (+)
AMCG00019125 wdr48 coding upstream 195372 4912531 ~ 4930234 (+)
AMCG00019120 NA coding upstream 382373 4733553 ~ 4743233 (+)
AMCG00019121 acvr2b,actriib,LOC108436077 coding upstream 401825 4715962 ~ 4723781 (+)
AMCG00019133 LOC103360316 coding downstream 1352 5140560 ~ 5142326 (+)
AMCG00019132 NA coding downstream 8507 5147715 ~ 5152017 (+)
AMCG00019141 NA coding downstream 142090 5281298 ~ 5305514 (+)
AMCG00019140 NA coding downstream 167205 5306413 ~ 5318056 (+)
AMCG00019139 acaa1,LOC102793903 coding downstream 181065 5320273 ~ 5325949 (+)
G31622 NA non-coding upstream 95511 4972972 ~ 5030095 (+)
G31566 NA non-coding upstream 377857 4747548 ~ 4747749 (+)
G31461 NA non-coding upstream 1261002 3864189 ~ 3864604 (+)
G31432 NA non-coding upstream 1736921 3353340 ~ 3388685 (+)
G31430 NA non-coding upstream 1780362 3344755 ~ 3345244 (+)
G31690 NA non-coding downstream 38726 5177934 ~ 5183039 (+)
G31799 NA non-coding downstream 433564 5572772 ~ 5577699 (+)
G31820 NA non-coding downstream 610609 5749817 ~ 5750063 (+)
G31867 NA non-coding downstream 1025523 6164731 ~ 6167316 (+)
G31872 NA non-coding downstream 1048184 6187392 ~ 6187723 (+)
AMCG00019111 phlpp1,LOC106599727,LOC103135813,LOC101477421,LOC106925929,LOC102225687,LOC103479552 other upstream 757403 4319596 ~ 4368203 (+)
AMCG00019100 crem,crema,LOC105019435,LOC106578540,LOC108428923,LOC103396770 other upstream 1914716 3190612 ~ 3210890 (+)
AMCG00019096 LOC107727496 other upstream 2025435 3094452 ~ 3100171 (+)
AMCG00019089 NA other upstream 2507554 2520104 ~ 2618052 (+)
G31110 NA other upstream 2978043 2141830 ~ 2147563 (+)
AMCG00019154 ghrhrb,LOC107704523,LOC106560417,LOC107717144,LOC107556991 other downstream 791496 5930704 ~ 5939597 (+)
G32005 NA other downstream 2281293 7420501 ~ 7421083 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other downstream 3206247 8345455 ~ 8384592 (+)
G32286 NA other downstream 4122166 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other downstream 4190271 9329479 ~ 9348819 (+)

Expression


Co-expression Network