AMCG00019133 (LOC103360316)


Basic Information

Item Value
gene id AMCG00019133
gene name LOC103360316
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 5140560 ~ 5142326 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019133
ATGTGCCTTATCTCACCCGTTAAGGACATGTGCTCGGCCTGTTTGAAACCTGTGTATCCAATGGAGAGATTCATGGCCGATAAATTGATCCTCCACCACAACTGCTTCTGCTGTAAACACTGTCGCAAAAAGCTGAGTCTGCGCAATTATGCTGCTCTTTACGGGGAGTTCTACTGCATATTTCATTACCAAAGCCTTTTCAGGACAAAGGGCAATTATGACGAGGGATTTGGCCATAAGCAGCACAAGGACCGATGGCTCCAGATGTCCCCAGGACCCGAACACGACACGAGAATGGCTTGCAAACAGTCagaaaagaaagcaagagcATCCGATATAGGGTTACAGCACCTCGCCACCTCACCTGTGCCGAGAACACCGACACAACACAAGCAAGGCAGggcaggagagacagagagcagcgCAGAGTCTAGAAACAAGCTGAGGCTTAGTTGGCCTCCTCCGAAATCCGGCCTGGAAACACACTCACCAAAGATGGTTAGGGAGAAAAATCCACCAGAAAGGTCCATCACTGGGAGAATGGCAGAATTAAACCAAAGTAAATCAGCTTTAGGGAATCCGTCCCCCCAAAAAGAGAGTCCAGGACCTGCAAAAGCTGAGAGAGCACAGAAGCCAAGCGTCAGCATTCGCTAA

Function

NR:

description
PREDICTED: cell wall protein IFF6-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019133 True 654 mRNA 0.50 4 5140560 5142326

Neighbor

gene id symbol gene type direction distance location
AMCG00019131 NA coding upstream 1352 5125606 ~ 5139208 (+)
AMCG00019127 NA coding upstream 162670 4968121 ~ 4977890 (+)
AMCG00019126 NA coding upstream 177327 4950027 ~ 4963233 (+)
AMCG00019125 wdr48 coding upstream 210326 4912531 ~ 4930234 (+)
AMCG00019120 NA coding upstream 397327 4733553 ~ 4743233 (+)
AMCG00019132 NA coding downstream 5389 5147715 ~ 5152017 (+)
AMCG00019141 NA coding downstream 138972 5281298 ~ 5305514 (+)
AMCG00019140 NA coding downstream 164087 5306413 ~ 5318056 (+)
AMCG00019139 acaa1,LOC102793903 coding downstream 177947 5320273 ~ 5325949 (+)
AMCG00019143 NA coding downstream 224140 5366466 ~ 5390362 (+)
G31663 NA non-coding upstream 12931 5093881 ~ 5127629 (+)
G31622 NA non-coding upstream 110465 4972972 ~ 5030095 (+)
G31566 NA non-coding upstream 392811 4747548 ~ 4747749 (+)
G31461 NA non-coding upstream 1275956 3864189 ~ 3864604 (+)
G31432 NA non-coding upstream 1751875 3353340 ~ 3388685 (+)
G31690 NA non-coding downstream 35608 5177934 ~ 5183039 (+)
G31799 NA non-coding downstream 430446 5572772 ~ 5577699 (+)
G31820 NA non-coding downstream 607491 5749817 ~ 5750063 (+)
G31867 NA non-coding downstream 1022405 6164731 ~ 6167316 (+)
G31872 NA non-coding downstream 1045066 6187392 ~ 6187723 (+)
AMCG00019111 phlpp1,LOC106599727,LOC103135813,LOC101477421,LOC106925929,LOC102225687,LOC103479552 other upstream 772357 4319596 ~ 4368203 (+)
AMCG00019100 crem,crema,LOC105019435,LOC106578540,LOC108428923,LOC103396770 other upstream 1929670 3190612 ~ 3210890 (+)
AMCG00019096 LOC107727496 other upstream 2040389 3094452 ~ 3100171 (+)
AMCG00019089 NA other upstream 2522508 2520104 ~ 2618052 (+)
G31110 NA other upstream 2992997 2141830 ~ 2147563 (+)
AMCG00019154 ghrhrb,LOC107704523,LOC106560417,LOC107717144,LOC107556991 other downstream 788378 5930704 ~ 5939597 (+)
G32005 NA other downstream 2278175 7420501 ~ 7421083 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other downstream 3203129 8345455 ~ 8384592 (+)
G32286 NA other downstream 4119048 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other downstream 4187153 9329479 ~ 9348819 (+)

Expression


Co-expression Network