AMCG00019139 (acaa1,LOC102793903)


Basic Information

Item Value
gene id AMCG00019139
gene name acaa1,LOC102793903
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 5320273 ~ 5325949 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019139
ATGCACAGGGTTAAGGTGGTGTTTGGCCACCTGTCTCCGCCGCCCACAGGCCGAGCCCAGGCGAGGGTGACCCGGGCTCAGTGCAGCGCCGCGGCTCCGGCCAGCGCGGACGACATCGTCATTGACACCTCCCCCGACGAGCTGCTGAGCGCCGTGATGTCCGCGGTGCTGAGGGACGTGGGTCTGGCGCCGGACAAGCTGGGAGACGTGTGTGTTGgCAATGTGCTGCAGCCCGGGGCCGGGGCGCTCGTGGCCCGAGTGGCCCAGTTTCTGAGcgGGTTCCCCGACTCCGTGCCCGTTTACACCGTGAACCGGATGTGCTCCTCTGGGCTGCAGGCGCTGTTCAACGTGGCAGGTGGCATCAGGAATGGCTCCTATGACATCGGCCTGGCCTGTGGGGTGGAGAGCATGTCCCTGCGCTCGGTGGGAAACCCCGGGGACGTCAGCGCCAGGCTGGTGGACAATGAGAAGGCCAGGGACTGCCTCATCCCCATGGGGTACGAGTCCTCAGACCGGCAGAGAGAGTTAGAGGGCATCTCAGGGTGAGATCACCCCGGTCACCACCCAGTTCGTGAGCGACGACGGGACGGAGCGGACCGTCACAGTGACCCGAGACGAGGGGATCAGGCCGGGGACGACCCTGGAGGGGCTGGCCAAGCTCCGGCCCGCGTTCGGCGAGAACGGCAGCACCACGGCAGCCAGGTGAGCGACGGGGCGGCTGCGGTGCTGGTGGCTCGGCGGGCGAGGGCCGAGGAGCTCGGGCTGCCCGTGCTGGGGGTGCTGAGGGCCAGCGCGGTGGTGGGAGTGCCCCCCGACGTCATGGGCATCGGACCGGCCTACGCCATCCCCGCCGCCCTGCAGAAAGCAGGTCTAACGGTGGAGGACGTCGATGTGTTTGAAATCAACGAGGCCTTTGCGAGTCAGGCGGTGTACTGTGTGGAGAAGCTGGGGATCCCTCTGGACAAGGTCAACCCCAACGGAGGGGCCATCGCCCTGGGGCACCCGCTGGGCTGCACGGGGGCCCGACAGGTGGTCACGCTGCTCAACGAGCTCCAGCGCAGGGGCAAGAGGGCGTATGGCGTCGTGTCCATGTGCATCGGGACCGGGATGGGGGCGGCGGCCGTGTTCGAATATCCCGGCAAATAGCCTCCGGAGGGGCGTGGGACGGAAGCGAGTCCTGCCCGGGATGACGTGGGGCCAATCGCACTTCTGGATGAAGATTTAGAGAGACTTTAATTGCTACAATTTAGAACAGGATTGTATCACTAATTCATTGACTTAATAGTCAGACACGGCATTTGCGTGAAACGGTAACAATGTCTTCTCTTCTCATGCTGTGAGGAACATGTCCCAGGCTGCACTTGTGAGCCACAGTACTGTTAGTGTCAAGAAACACACGTGCTTTACTATGAAACTGTTCTAGTGAAGCATCAATTTAAGGCTTGATTAACAAATGGAAAAGACATCGGAGTGGGAAACATCTGTTCAGTATACAGCTGTTTTCTAATGCTTAAAGTATACCTGCATATTGGCCGGTTTTGACCTCTTCACTATCTCAGCCCAAGTACCAAGTGCTGTTCTGCTATGATTGTGCAGTGAATGCCTTCTGCTTTATTTAGCGTTTATTCTTTGTAATCCAGAAACGGAAAGATAAGTTTACATGATACTTGAAGCAAAATTAAAGAATGCATAATAAATGGGGGGGGAAACAGATAGCATTCCACTGATAGTTTAATGGTATTTTGTCTGTAATCGTGTTTCCAGGCTCCTGGGGGTCGTGCCTGTTTGGTCTTTAATCTTGCTGTGTGGCACACAGAGCAGAGCCGTGTCCCGTGCTTGTCACTGCGGTGCCGCTGTACAGCGTCTGTGTTTTGGTGCCATTACCTCGTTCAAGCTCCGTTTTAGAAAACTGTTACGTTATAACTATGAGAAAAGAGACGTTCTAGATCGGGAAGTTGAAAATGACACATTAAATTGCTCGATGATTTGCACTAACATTAATACTGTCTTGTAGGTACTGGAACAATAGAGTTTTTCTAATTCGAAATAAACTGGAAATGAAATGGCATGTGTATGTGCAGTATTTGGAGAATTATCCAGCAAAAGTACCTCACTATACACATCAATGACAGTCTTTTGTATGACA

Function

symbol description
acaa1 Predicted to enable acetyl-CoA C-acyltransferase activity. Predicted to be involved in fatty acid beta-oxidation and phenylacetate catabolic process. Predicted to be active in peroxisome. Is expressed in gut and liver. Orthologous to human ACAA1 (acetyl-CoA acyltransferase 1).

NR:

description
3-ketoacyl-CoA thiolase, peroxisomal

GO: NA

KEGG:

id description
K07513 ACAA1; acetyl-CoA acyltransferase 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019139 True 2146 mRNA 0.56 11 5320273 5325949

Neighbor

gene id symbol gene type direction distance location
AMCG00019140 NA coding upstream 2217 5306413 ~ 5318056 (+)
AMCG00019141 NA coding upstream 14759 5281298 ~ 5305514 (+)
AMCG00019132 NA coding upstream 168256 5147715 ~ 5152017 (+)
AMCG00019133 LOC103360316 coding upstream 177947 5140560 ~ 5142326 (+)
AMCG00019131 NA coding upstream 181065 5125606 ~ 5139208 (+)
AMCG00019143 NA coding downstream 40517 5366466 ~ 5390362 (+)
AMCG00019146 gars,LOC102797257,LOC107591252,LOC103132552 coding downstream 207731 5533680 ~ 5542935 (+)
AMCG00019147 hhatla,hhatl,LOC107718176,LOC107688529,LOC107722653,LOC107689424 coding downstream 223644 5549593 ~ 5563655 (+)
AMCG00019148 NA coding downstream 240347 5566296 ~ 5570536 (+)
AMCG00019151 NA coding downstream 348028 5673977 ~ 5685061 (+)
G31690 NA non-coding upstream 137234 5177934 ~ 5183039 (+)
G31663 NA non-coding upstream 192644 5093881 ~ 5127629 (+)
G31622 NA non-coding upstream 290178 4972972 ~ 5030095 (+)
G31566 NA non-coding upstream 572524 4747548 ~ 4747749 (+)
G31461 NA non-coding upstream 1455669 3864189 ~ 3864604 (+)
G31799 NA non-coding downstream 246823 5572772 ~ 5577699 (+)
G31820 NA non-coding downstream 423868 5749817 ~ 5750063 (+)
G31867 NA non-coding downstream 838782 6164731 ~ 6167316 (+)
G31872 NA non-coding downstream 861443 6187392 ~ 6187723 (+)
G31873 NA non-coding downstream 862486 6188435 ~ 6188700 (+)
AMCG00019111 phlpp1,LOC106599727,LOC103135813,LOC101477421,LOC106925929,LOC102225687,LOC103479552 other upstream 952070 4319596 ~ 4368203 (+)
AMCG00019100 crem,crema,LOC105019435,LOC106578540,LOC108428923,LOC103396770 other upstream 2109383 3190612 ~ 3210890 (+)
AMCG00019096 LOC107727496 other upstream 2220102 3094452 ~ 3100171 (+)
AMCG00019089 NA other upstream 2702221 2520104 ~ 2618052 (+)
G31110 NA other upstream 3172710 2141830 ~ 2147563 (+)
AMCG00019154 ghrhrb,LOC107704523,LOC106560417,LOC107717144,LOC107556991 other downstream 604755 5930704 ~ 5939597 (+)
G32005 NA other downstream 2094552 7420501 ~ 7421083 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other downstream 3019506 8345455 ~ 8384592 (+)
G32286 NA other downstream 3935425 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other downstream 4003530 9329479 ~ 9348819 (+)

Expression


Co-expression Network