AMCG00019140


Basic Information

Item Value
gene id AMCG00019140
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 5306413 ~ 5318056 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019140
ATGCCCGCTGTCGAAGCGCTTCAAAGCCAACCGCTGTGCCGCTCCGTTAGCTGCGCTCGCGCCTTTTCTGACTTCCAGGAACATGTCATGACAGAGTCGTCTTACGCCACGTCTTCTTCCAAAATGCTGTTCTTCTTCGTGGCGTTTGGGTCTCTGCACACGGGCCGCAGGTCCCCCCCACCGGGCAGCATCCCCgaggagcagcagcagatcGCCCGGCAAGGCTCCCACACCAGCATCAACAGCGAAGGAGAGTTCATCCCCGAGAGACACGAGCACGGGATCTTGGATCCTTTTGGAAGTCCCGATGACTCGCTGTCGGACAGCTGCCATTCCCTAGACGTGTCCCCGGACAGCCCTCCCTTCTCACAGCGGGGGAGCAGCAGAGAAAGCTACATGAACCGCAACATTGAAGGCGGCAGATACAATAAAGGGGGAACCTTCCCCAGGCAGTTTCATCTCTCCCACCAGAGGAAGGACTACAATGACGGTCGCAGGACCCTCCCCCGCCGGTTCATGCCTCAGGACAATCTCTTCCAGCTGGTCCCCCCCAGCAGGACGCGGAGCTATGGGGACAGTGGCACCTCCAACCTGACGCTGTGCGACCTGCGCACCATCAGCTGGAACTCCGACAAGACCAGCAAGCGAACTTCAGCAGCCAAATCTCCTCAGGCGCCGGTGAATTGGAGGCTGGGGAAGCTCCTGGGCCGGGGGGCGTTTGGGGAGGTGTACCTCTGCTACGACgtggagacggggagagagctGGCTGTCAAACAGGTGCCTTTTGACCCTGAGTGCCAGGAGACCAGCAAGGAAGTGAACGCCTTGGAGTGCGAGATCCAGCTGCTGAAGAACCTGCGGCACGATCGGATAGTGCAGTACTACGGCTGCCTGCGGGACCCTGAAGACAGGAAGCTCTCCATCTTCGTCGAGTTCATGGCGGGGGTGAGTCCGTCCCGTGTGCGGCCCGCCGAAGGTGCTAATATTTTGAGAGACTCCTCGGGGAATGTGAAGCTGGGTGACTTTGGGGCGAGCAAACGCATCCAGACCATCTGTATGTCGGGCACTGGGATCAAATCAGTGACGGGGACCCCCTACTGGATGAGCCCCGAGGTGATCAGCGGAGAGGGATACGGGAGGAAGGCCGACGTCTGGAGCGTGGCCTGCACGGTGGTGGAGATGCTGACTCAGAAGCCCCCCTGGGCCGAGTTTGAAGCCATGGCGGCCATCTTCAAGATCGCCACCCAGCCGACCAAGCCGGTGCTGCCCGAGGGCGTGTCGGACTCCTGCAGGGAATTCCTTCGGCAGGTCTTCGTGGAGGAGAAGCGGCGACCAACCGCGCAGGAGCTGCTTTGCCACCCCTTCATCCAGGACCGGGGCCAGTGACCTCTTTGGGGGGCACTTTGAGAAGCCCCTCTGCCTTCTCAGTATGGCTTGAAGCCCCCCCTCACCAGCTGTCTCTCCCTGAGACGACCAGAAACGTCCGGGGTGGGAGAAGAGAACCTTCCAGTGGACCGGTCTGAGTATTCATACTGGACGAGCCATTAGGATGTTATAAAAAGCTTAGTTTACTTCCTTCTGTGAGGACGTAAGGCTCTGTGGaatgagtttttgtttgtttgtttgtttggcttgtttgtttgaagCTTTACCAACCGAATACAGCAAACCTCCAGCGGATCTTCATTTGCAGGGCGAGGAGACAGTGGCTGCCCCGAGGCTCGGACCGCACAGCTTTCCCCCGTCACACTGGAGTGACAGCATGGTAGACATGTCCACGGCCGAACCTAGGACCAGGAAGGGTCGGGGGAATTCTGGGTTTGTTGCCAGGAGGACTGCGTGCCTCGAATTGGGGCAAACGATTACCAAAAGTGTTAGATCATGGTCAGTAgcgtaaaatgtattttaagccGTTGTATGAATATTGGAAGCAAGAACTTCGTCAGAACACTATCTGATGAGAAGGACAAGAGATGCCACCTTTCAGACAGATACATGTAAAGGGTTCCCATGTTGCCTTTAAAGTTTGTTGAGGAGATCAGTCTGCAGTTATAAAGCAAGTGGGGCTTAAATCTTGGCCCTTGAAGGCAAATGGCCTGGCTGGCGTGCAGGGCTGGCGCTAGGGTAACTTCCCACCCCCCCAAGGACATGGTCACAACTTGTGCTCGTTGGCATTAGCCTGCGTGGACTGACTACGGTTTAAACTAAAGAGTTGCCAATTTCCTTAAACAATTAGAGtttatattttgctgttttcCAGCCCCCTCCCAGGCTTTCTGGCCTCCCTCAAAGACAACGGCCCTGCATGCTTGGGAAGTGCTGCTATGTTTGATTACTGTATTATCCAAAGCTTTTTTCCTCAGCAAaacattcaacaacaacaaacgaaacaaacaaacgaTGAAACTGTTGGATAAACTTTCAACATGTTTCCTAAACATTCACGGACATTTTGTCTTGGGCACTTTTTGTAACTTATGCTTTTTAGGAGGAAATACTTGGTTAATGGAATAATTCAATTACcgttttggtaacactttatgaTAAATGtccaaatgcaatttaacatgAAGTAACACATGGTTTCCTATAGAGTTCATATTGAATGCATATGAAGTAAGCATGTATTCATGACATTTTCCACAATTATATCACATCATTCCCTTTGTATACCCGATTATAGAGTGTAGCCTGATTATTGCAAAATGGCCTTTTTCAGTTGGTTATATATTACTTTGTTCAATAGAATTCTTATCAGAAGTTCATGTACTTCTCAACACTGtggcattttcaaaatgtaattctggACATAAACTGATGCAGATTTGTGTTGCAGACGTTGATGACATTACAGTTAAGCTTAGTCAAAGTGAACATTACATTCACATTTCTGAGGACCTGAGAGAATTGTCCACAATTTCTGTAGGCCAGTCAGACGTGGGGAAGGCCGGTCTCAGCAGGTCAAAGGACAGTTAGATGAGGATGTGTCAGAAGGTGGGAATCGTAGtgaattcacattttgtataaAACTCCCAACATGGCGTAGAGCTTCAGATTCACTGTACTTCAGTGTGTCAGATTGAAATTCTCTTCAATAAACTCAGCAGAGAATTGGGGATTTTGAATCAGATTCAGTGCTGTGCAGAATGGAGCTGTGGATTTCATACGCACTCAAGTCCAATAAATAGTCATTTTAGAAGTTTCTTGGAGttgccaaataaaaatacatctagATGGGCATGTTAGAATCACAATTGGATTGAATGACTTATCCAGAACTTTATATGAACGGTTTAAAAATGCGAAATTGCATCATTTTAACAGACAACAGTACCTGTATGTATTGTTTCAAATAGGCATTGTGCTAATGAGATCAGCTCCCTCCTAATGCAGAGCTGGTGGACAGACTACATCCTGAGCTTTTCCCACGGACTTCTGAGCCGGTCACACACTTAATGCCATTGAACACTTCAAACCAAAATGCAGCACGTCTGTAAGCACTTTCATTTGCATTGCGTTCCACAGGGAACAGGCATTCCATTCTAGATTCCCAAAGTAGAGGAATAAAGGAAAACGTTGTACATGGGGTATACTTGCAtaagtacatttaattgaaatgattgtACACTAAATGTATATTCTACTGCactttttttaaagctacattGTAAAAAGCGTTGCCAGTGTGATCTGCAGAATGTAAACATGATAGCTTTGAATCCAGCCGGCGTCTGGTTTTATGACCGACCGTCCGTAGGCGCTTCAAAGTTCTGATTTATTAAACTGCAGTATGTCTCCCACTGGTTATGACCGAGGCGAAATCTGGGTAGCAGAGGCCTTGTATGAAAAACTCTGGAaacatgtattgtgtattttttgatTGTACATTTAAgatgataaattaattaaacttttttttaaactgttta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019140 True 3929 mRNA 0.49 11 5306413 5318056

Neighbor

gene id symbol gene type direction distance location
AMCG00019141 NA coding upstream 899 5281298 ~ 5305514 (+)
AMCG00019132 NA coding upstream 154396 5147715 ~ 5152017 (+)
AMCG00019133 LOC103360316 coding upstream 164087 5140560 ~ 5142326 (+)
AMCG00019131 NA coding upstream 167205 5125606 ~ 5139208 (+)
AMCG00019127 NA coding upstream 328523 4968121 ~ 4977890 (+)
AMCG00019139 acaa1,LOC102793903 coding downstream 2217 5320273 ~ 5325949 (+)
AMCG00019143 NA coding downstream 48410 5366466 ~ 5390362 (+)
AMCG00019146 gars,LOC102797257,LOC107591252,LOC103132552 coding downstream 215624 5533680 ~ 5542935 (+)
AMCG00019147 hhatla,hhatl,LOC107718176,LOC107688529,LOC107722653,LOC107689424 coding downstream 231537 5549593 ~ 5563655 (+)
AMCG00019148 NA coding downstream 248240 5566296 ~ 5570536 (+)
G31690 NA non-coding upstream 123374 5177934 ~ 5183039 (+)
G31663 NA non-coding upstream 178784 5093881 ~ 5127629 (+)
G31622 NA non-coding upstream 276318 4972972 ~ 5030095 (+)
G31566 NA non-coding upstream 558664 4747548 ~ 4747749 (+)
G31461 NA non-coding upstream 1441809 3864189 ~ 3864604 (+)
G31799 NA non-coding downstream 254716 5572772 ~ 5577699 (+)
G31820 NA non-coding downstream 431761 5749817 ~ 5750063 (+)
G31867 NA non-coding downstream 846675 6164731 ~ 6167316 (+)
G31872 NA non-coding downstream 869336 6187392 ~ 6187723 (+)
G31873 NA non-coding downstream 870379 6188435 ~ 6188700 (+)
AMCG00019111 phlpp1,LOC106599727,LOC103135813,LOC101477421,LOC106925929,LOC102225687,LOC103479552 other upstream 938210 4319596 ~ 4368203 (+)
AMCG00019100 crem,crema,LOC105019435,LOC106578540,LOC108428923,LOC103396770 other upstream 2095523 3190612 ~ 3210890 (+)
AMCG00019096 LOC107727496 other upstream 2206242 3094452 ~ 3100171 (+)
AMCG00019089 NA other upstream 2688361 2520104 ~ 2618052 (+)
G31110 NA other upstream 3158850 2141830 ~ 2147563 (+)
AMCG00019154 ghrhrb,LOC107704523,LOC106560417,LOC107717144,LOC107556991 other downstream 612648 5930704 ~ 5939597 (+)
G32005 NA other downstream 2102445 7420501 ~ 7421083 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other downstream 3027399 8345455 ~ 8384592 (+)
G32286 NA other downstream 3943318 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other downstream 4011423 9329479 ~ 9348819 (+)

Expression


Co-expression Network