AMCG00019141


Basic Information

Item Value
gene id AMCG00019141
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 5281298 ~ 5305514 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019141
GTCGCGTCGTCCCCGGGCTGTTCGTGGCGTCGTTGTGACGGAGCAGACCGACCCCTCGGGTGACTCTCTTGCGGCGCTGCCGGGTCCTGACAGCGGCTGGTCTGCGCAGCGGTTTCCGGATCCCAGTGGCACCGACGACAGAGCGGATTACTCCTCCACTGCGCGTAGGATACTCACATTGAACACCGCAGAGTAGCCTGTTTATTGGACCATGAAGCTCTCAGGGCAGCGGGGTGAAGACTTTACTGAATAAAAGTTAAGGGCTACAGCGAAGCACAACAAAACCCAGATCCTGATGATGACTGTAAACATGGatgaCAGTTTCCCCACAGGACCCGGCTATCACAGGAACATGCACGATGACGAGGAGGCGCTCAACTCCATCATGAAAGATCTGGCTGCTCTGGGCCGATGCTATGTGCAACTGAACAACAGTAAACCGAAACCCCACCCCCTACCCTTCAGAGAGGACGATGTACGTATCAAGCTGGAgcacgagagagagaaacgGATTCTCCACTTCCGAAGGCCTTTGAAGTTTAAGGAGTTCTTTCAAAAGATCACAGATGTGTTCGGACAGCAGATGGATCTGTATTACCCTGACAAAGAGCTTCTCCTTCCGCTGAAATGTCAGGAGGATTTGGACAAGGCCGTGCTGAGCTTGGACCGCAGCCCGGCAGTGAAGTGTTTGCGGCTGTTAGTGAAGACTCCAAATAACAGCAACCCTGGTCCTTATCTGCAGGTCCACAACAGAGCAGACAAGCAGCCGGAGAAGTGGATGTCCAAGTCCTTGGGGGACCTGAAAGGCTCTCCGTACAAAAGCTCGGAGAGGGTGCGCAAACACTCGACAGTTGTTGAGCTCACTTCCCCGGTTAAGTCATGCTTAGGGTTGACCGCGACCAGATTGGCCCGCTACGAAGGCCTGGTTTGA

Function

GO:

id name namespace
GO:0016772 transferase activity, transferring phosphorus-containing groups molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019141 True 931 mRNA 0.54 9 5281298 5305514

Neighbor

gene id symbol gene type direction distance location
AMCG00019132 NA coding upstream 129281 5147715 ~ 5152017 (+)
AMCG00019133 LOC103360316 coding upstream 138972 5140560 ~ 5142326 (+)
AMCG00019131 NA coding upstream 142090 5125606 ~ 5139208 (+)
AMCG00019127 NA coding upstream 303408 4968121 ~ 4977890 (+)
AMCG00019126 NA coding upstream 318065 4950027 ~ 4963233 (+)
AMCG00019140 NA coding downstream 899 5306413 ~ 5318056 (+)
AMCG00019139 acaa1,LOC102793903 coding downstream 14759 5320273 ~ 5325949 (+)
AMCG00019143 NA coding downstream 60952 5366466 ~ 5390362 (+)
AMCG00019146 gars,LOC102797257,LOC107591252,LOC103132552 coding downstream 228166 5533680 ~ 5542935 (+)
AMCG00019147 hhatla,hhatl,LOC107718176,LOC107688529,LOC107722653,LOC107689424 coding downstream 244079 5549593 ~ 5563655 (+)
G31690 NA non-coding upstream 98259 5177934 ~ 5183039 (+)
G31663 NA non-coding upstream 153669 5093881 ~ 5127629 (+)
G31622 NA non-coding upstream 251203 4972972 ~ 5030095 (+)
G31566 NA non-coding upstream 533549 4747548 ~ 4747749 (+)
G31461 NA non-coding upstream 1416694 3864189 ~ 3864604 (+)
G31799 NA non-coding downstream 267258 5572772 ~ 5577699 (+)
G31820 NA non-coding downstream 444303 5749817 ~ 5750063 (+)
G31867 NA non-coding downstream 859217 6164731 ~ 6167316 (+)
G31872 NA non-coding downstream 881878 6187392 ~ 6187723 (+)
G31873 NA non-coding downstream 882921 6188435 ~ 6188700 (+)
AMCG00019111 phlpp1,LOC106599727,LOC103135813,LOC101477421,LOC106925929,LOC102225687,LOC103479552 other upstream 913095 4319596 ~ 4368203 (+)
AMCG00019100 crem,crema,LOC105019435,LOC106578540,LOC108428923,LOC103396770 other upstream 2070408 3190612 ~ 3210890 (+)
AMCG00019096 LOC107727496 other upstream 2181127 3094452 ~ 3100171 (+)
AMCG00019089 NA other upstream 2663246 2520104 ~ 2618052 (+)
G31110 NA other upstream 3133735 2141830 ~ 2147563 (+)
AMCG00019154 ghrhrb,LOC107704523,LOC106560417,LOC107717144,LOC107556991 other downstream 625190 5930704 ~ 5939597 (+)
G32005 NA other downstream 2114987 7420501 ~ 7421083 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other downstream 3039941 8345455 ~ 8384592 (+)
G32286 NA other downstream 3955860 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other downstream 4023965 9329479 ~ 9348819 (+)

Expression


Co-expression Network