AMCG00019143


Basic Information

Item Value
gene id AMCG00019143
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 5366466 ~ 5390362 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019143
ATTTCAATGAGCAGCTGTTAAGTCATCCAAGAGGAAGCTGCAACACACGCCCCGGAGAAACAGCAATCCACAAACACGTCTGTGGCGTTTCCACTCGGACCCTGTACTTGTGCTCCAAGCAGCCTGAGCCGCAATGCAATGCGTCAAAAGACAGCCGAGAAAAGCCAAACCGCACGACTTACTGTCCAAAGAGGAGATACAGCGCATCGCAACTGAAAATGGAAAGAAGCTAGgcaTGGAGGGCGATCCTGATTTGCAGCATCTCCTCACAGGCAATTATCTGTACAAAGTGAAGTCCAACTCCTGGAAGAAGGCCCGTTACTTCAAGCTGTTGAGTGACTGCAAGACAATATGGCAGGAGTCGCAAAAGCCTCTGAAGAAAAAGAGCTCACAGACTTTCTCCATCGAGGACATCGAAGATGTGCGTGTCGGGCGGCAATCCGAGGGCTTGAAGAAGTACACGAATGAATCCCTGGAGGAACAGTGCTTTTCCATCGTCTTCAAAGGTCAGCAGAGTAACCTGGACCTCATCGCTCCATCTGTGGAGGATGCCAAGCAATGGGTTTCTGGTCTGGATAAGATAAAAAACTACTTCTCTCACAATATGAGCAGTCAACAGAAGAGAAAGCATTGGCTACTAAGTTGTATGAAGGAGGCTGACAAAGACAATGACAATATGATGACATTAAAGGAACTGAAACACTTCCTAAAGAATGTCAACATTTCTGTGGATGACAACTACGCAAAGCAGCTGTTTATCCAATGTGACACATCCCAGTCAGGCACGCTGGAGGGGTCTGAAATCCTGGAGTTTTACAAGCGGCTGACCCAAAGAGACGAGATCGACACGATCTATGCCAAATACGCCACTTCGGACGGTAAAATGAGCGTGGAGGACCTGGTGAACTTCTTACAGAACGAGCAGCGAGAGCCTGTCTCAGAAAACGTTGCACACTCACTCATTGAACAGTATGAGGTTGATGAGAATGccaaacaaaatgaacacatgaCCAAAGATGGCTTCCTCATGTACCTGAACAGCCAACAGGGAATGATTTTCAACCCTGAGCATTACACGGTCTACCAAGACATGACCCAGCCCCTCAACCATTACTTCATCTCCTCCTCACACAACACCTACCTGATGGAGGACCAGCTGAAGGGGCCGAGCAGCACCGAGGCCTACATCAAGGCCCTTGTGAAGGGATGCCGCTGTGTGGAACTGGATTGCTGGGATGGGCATGATGGAGAACCAGTTATCTACCATGGATACACCCTGACCTCCAAAATACTGTTCAGAGATGTCATTAAGGCCATCAGTCAATATGCTTTCAAGACCTCTGAGTACCCAGTCATCCTGTCCCTGGAGAATCACTGCACTGTGGAACAACAGAACAAGATGGCCTCTCACTTGTGGAGCATTCTGGGGGACGCATTGCTCACGGAACCTCTGGGAGACGGTGTGCCCATGAACTTCCCCTCGCCCGAGCAACTTAAAGGTAAAATCCTTATCAAGGGGAAACGGTTAAACAAGCTGGAGCACAGGCTGTCCAATGGTCCATCTGTGGATGAGGAGATGGTGTCTGAGGAGGATGAAGCTGAAGATGCAGTTGCGGATgcggagaagaagaagaaaaagccaAAGGGCTCCAAGATTAAATTATCAATGGCGCTTTCTGACGTGGTCATCTACTGCAAAAGTGTTCACTTCTCtggatttgaaaatgcaatgaaaaaccAGTCCTTCTACGAGATGTCTTCCTTCAAAGAGGGGAAAGCTATAAAGTTAGCACAAGATTCAGGAAATGCATTTGTTCGTCACAACAATAAGCAGCTAAGCAGAATCTACCCGGCCGGCTCAAGAACCGACTCGTCAAATTACAACCCTGTGGAGCTGTGGAACGCAGGCTGTCAAATAGttgctTTGAACTTCCAGACCCCCGGCAAAGAGATGGATATAAACCAGGGCAGGTTCATGCAGAATGGCTTCAGCGGCTACAACTTGAAGCCCAAGTTCCTCCGAGACCCTAATACCGATTTCGACCCCAGTCACCCCTCACAGGGAGAGTGGATGAATCCCAAATCCCTCCACATAATGGTCATCTCAGCTCAGCAGTTGCCCAAGGTGAACAAGGAAAAACTCAACTCCATCGTTGATCCCTTGGTGAAAATGGAGATCTTCGGAGTCCTGCGTGACTGTGctgcaaaagaaacaaaacacatcgACAACAATGGGTTCAACCCAATGTGGAATGAAAAGTTCACTTTTAAGGTTTATGTCCCCGATCTGGCCATCGTGCGCTTTCTTGTGGAAGACTACGATCATGCTTCACATAACGACATGATTGGGCAGTTCACGCTGCCATTCAACAGCCTGCAGATGGGGTATCGACACATTCCTTTAATCAAGAAGAGCGGCGAACTCCTCTCCTCAGCCTCCCTCTTCGTCCACATCATGGTTACAGATTAATGGAAGAGATCTGAACTGAACTACACCAGCGCAATGCCAAAAACACAAGATTTCTACAGAGTCTGTAACTGGTTTGCATGCAAACAACCGAgattattcattgttttaacaCCATCATTTTAAAAGCCAAAAGGTAATCTATTCCATTCTTTTGATGTCTGAAGTAAGACAACCGCAGAATAGTTTTATAAAGTCTTAAATCTTTTTCCTTGCTTTTTAAACAGATTATTCTTTCATATATCCTGTCAAGcctttgagttttttttatataccaGGTATGAATCAGCACTGTATAATGAAAAGCCCAAGCACAATTTGTGGTGAATGTGCAAGGAAAACAGGATgacttttttgtattgtttaatgaagcaaatgttttatttttttaagaattagtTTTCTAATGTGTCTGGTCCTCCTTTTCTCTGATGTAGGCGATGTTTTCAACCCCCTATAAAGTCACTGATCCCGACtaccagcaaaaaaaaaaaaaaaaactcagtgtGGTTACTGTTGTATAGTCGAGTATAGCTGCCAACAGCTTGTCTTTGGATTTCTTAAATGGTACCATTCCCGATTGCTGATACGAAGAACTGAAGGTGTGTAGAATATTTCAGCCACCGTGTGGTCTACTTGCTCCATAAATATCTCAAGCACTCTCTACAGTGATGAGATGCATCTTTCCAAGTTTTCTAACCATACTAATGcacaagtttaaaaacaaaaacatttgatttaatggATCATTACTCAGTGAAATTCTgtcattgtaaaatatacacatgGTTCATAAATATTACTCATACACAGTTTAAGTTTTCATGTATCCTATTAAACAATGAACATGGTCTATTTTTTAACATAGCtcatcaattaattattttgcagcaTAGCTGCTGTTAAGATGTCTGTACTGATGAATATTATTTGGAGTCATCAGACTGTTATTGTTGTCTTTATAATTTtgcctcactgtatatttaatgtgcTTTTTCAAAAAAAGATACAATTTTATTCCTATCAATAACTATAGTACATTAATGTAAAATTTTGAAGTTAgtcaaatcagttttaaatgcattcctgCATCGCACAATGgattaatgtacatttatggACTGTTTTGACACTTGACACATTCTGTCcttcttaatttatttcttaaatcagcattttCTCTAGCataaacactaaaaaaaaaacctttttaagCCTGAATGGgtctaaaataaacaaagaaaaaaggaatataaataaacaaagtgcaGATTATTACATTAAAGGTGACATTTTTAGATGTTGATAAACTATGCAACAAACTCCCTTTAATGGACCACTTTTTGTAAAAGCggataagaataaaataatttttgaAACTCGAAGTCGACtcattatttatacaatatcttttattgcttttatgaTGTTTGTGGGGGACATACAAACATAACAGATTGAAGGGACTGTTCCGTTTTAgcattattcaatattttaatgaattggatCACACTCTGTAAATATGGTACGTGTTCACTTCCAAAACAATCATGCTTAAAACCTAATAAAAGTGATTGAACATttcttggtgtgtgtgtatgtagacGAATCAGCAGAATACAAACCTTAGGGTTTTACATCATTAAAGAAGCGGGAAGGAATGGTTTTGTAAAGGGAAGGGTACATGGAGAA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0008081 phosphoric diester hydrolase activity molecular_function

KEGG:

id description
K05857 PLCD; phosphatidylinositol phospholipase C, delta

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019143 True 4159 mRNA 0.42 15 5366466 5390362

Neighbor

gene id symbol gene type direction distance location
AMCG00019139 acaa1,LOC102793903 coding upstream 40517 5320273 ~ 5325949 (+)
AMCG00019140 NA coding upstream 48410 5306413 ~ 5318056 (+)
AMCG00019141 NA coding upstream 60952 5281298 ~ 5305514 (+)
AMCG00019132 NA coding upstream 214449 5147715 ~ 5152017 (+)
AMCG00019133 LOC103360316 coding upstream 224140 5140560 ~ 5142326 (+)
AMCG00019146 gars,LOC102797257,LOC107591252,LOC103132552 coding downstream 143318 5533680 ~ 5542935 (+)
AMCG00019147 hhatla,hhatl,LOC107718176,LOC107688529,LOC107722653,LOC107689424 coding downstream 159231 5549593 ~ 5563655 (+)
AMCG00019148 NA coding downstream 175934 5566296 ~ 5570536 (+)
AMCG00019151 NA coding downstream 283615 5673977 ~ 5685061 (+)
AMCG00019156 NA coding downstream 579080 5969442 ~ 5980521 (+)
G31690 NA non-coding upstream 183427 5177934 ~ 5183039 (+)
G31663 NA non-coding upstream 238837 5093881 ~ 5127629 (+)
G31622 NA non-coding upstream 336371 4972972 ~ 5030095 (+)
G31566 NA non-coding upstream 618717 4747548 ~ 4747749 (+)
G31461 NA non-coding upstream 1501862 3864189 ~ 3864604 (+)
G31799 NA non-coding downstream 182410 5572772 ~ 5577699 (+)
G31820 NA non-coding downstream 359455 5749817 ~ 5750063 (+)
G31867 NA non-coding downstream 774369 6164731 ~ 6167316 (+)
G31872 NA non-coding downstream 797030 6187392 ~ 6187723 (+)
G31873 NA non-coding downstream 798073 6188435 ~ 6188700 (+)
AMCG00019111 phlpp1,LOC106599727,LOC103135813,LOC101477421,LOC106925929,LOC102225687,LOC103479552 other upstream 998263 4319596 ~ 4368203 (+)
AMCG00019100 crem,crema,LOC105019435,LOC106578540,LOC108428923,LOC103396770 other upstream 2155576 3190612 ~ 3210890 (+)
AMCG00019096 LOC107727496 other upstream 2266295 3094452 ~ 3100171 (+)
AMCG00019089 NA other upstream 2748414 2520104 ~ 2618052 (+)
G31110 NA other upstream 3218903 2141830 ~ 2147563 (+)
AMCG00019154 ghrhrb,LOC107704523,LOC106560417,LOC107717144,LOC107556991 other downstream 540342 5930704 ~ 5939597 (+)
G32005 NA other downstream 2030139 7420501 ~ 7421083 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other downstream 2955093 8345455 ~ 8384592 (+)
G32286 NA other downstream 3871012 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other downstream 3939117 9329479 ~ 9348819 (+)

Expression


Co-expression Network