AMCG00019145 (LOC103360289)


Basic Information

Item Value
gene id AMCG00019145
gene name LOC103360289
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 5419981 ~ 5436120 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019145
gttTCCCAGTCAAACAGCAGTCTAAAGAAGCAGAGGAGTAGAAGTATCTTCAGCACCTTTTTTTGCTGCTTTCGCAACTACAATGCGGACCCCCCctccaccaacaacaacacaagctCCCTCCCGGCACCGGTGGAGGAGAATGGAACACTCCCCAAGCCCCCAGCTAAATACCTCCTCCCCGAGATGAACATATCTGATTATGGCAAGAAGTGTGTGGTGATTGACTTAGATGAAACGCTGGTACACAGCTCCTTCAAGCCTATTAGTAATGCTGATTTCATCGTTCCTGTTGAGATCGATGGCACAGTGCACCAGGTTTACGTTCTGAAACGGCCGCACGTGGACGAGTTCCTGCAGAAGATGGGGGAGCTCTTCGAATGCGTTCTCTTCACCGCGAGCCTGGCGAAGTATGCAGACCCAGTGGCAGATTTGTTGGATCAGTGGGGGGTGTTCAGGGCGAGACTCTTCAGAGAATCCTGCGTTTTCCACCGAGGGAACTACGTCAAAGACCTGAGTCGTTTAGGGAGAGAGCTTGGCAAAGTTATCATAGTGGACAACTCCCCGGCTTCATACATCTTCCATCCAGAGAATGCAGTTCCCGTGCAGTCCTGGTTCGATGACATGACGGACACAGAACTACTAGACCTGATCCCTTTCTTCGAAGGACTGAGCAAAGAGGAGGATGTTTACAGCGTACTGCAGAACCTGAGGGGCAGGTAGCGTCGTCTCCGGGGCCCTCCCTCGGGAAGCACGGCTGAGCAGGACGAGGAACGTTGCCAGCCGGGACCCCGGGGCCGGTCGGTCAGTCCCTCACAATCACGACTCACGTCTTCACCAGCCGAAGCTTGACAAGGGGGCGGCTGTGCATCGCCAGGAGAGAGCGGCTTTGACCTCCGATGGACACGTTTTCCACGTACTCGATGATTTCAGGATGATTCTGAAGTCCCACATGGccagaagatttttttttttttttaattcggagggtggggggggaaataaaaaccaAATTTTTTATCTTAGACAAGAATTTTACTATCCTATTCAGTTCTTTCTATTAACCAAAAAcatttcgttttgtttttgagagaggagaaaaaaaaaaaaagcatttggatttttttgtctttcGTTGTTGCTATGCAGGAAGTCTCTCTTTTCGATCTACGGTAGTTTAAACGACCTGATTTTTTTCTTACCGAATGAAGTGCCTTTTCGAATGTTGTTTTTACGGGGGAAAAgttacattttgtatgcagcATATTTCCAGAGATCTTTTAACAAATATACGCTTTAAAAAGAAGTGGAGATGAATCTTTATAAAGCACTAATTTAtgctgaagatttttttttttttcttccctttaccttcattggtttttttttttctcaactcGGACGCTGGGTACACGTCTCCATCATATTCTGAATGGTGTTTCTTTCAAAAGGCTGATGCCTTTATATAGaagtgattttctttctttagtttattattatatgtaggAATGTGCTAGTGTCACTATAGcctttaattatattactggAATGCATTTGCAATTGTGAcgttttaagttattttattttgggctGGGAATAAGGTAGCAAGTGAAAGGAGAAGATAACCCACAGGTGGTTGAAAGTGTGCCAATGGTTGTGTTTCTACGTGATGCCAAGCACTGGATTACATTTCAGGAAGTGCCAGTTGTTAGATATTTCCCAAATGATTTCAGCTTGTTGTGTGAGATCTAAATTTGGGTATAGAGTATAAAACGAGCTTGCAGGGGCACAGCAAGAGTTCAGATAAAGGCctgttattttaattctttttatgttcagtggtgtgtatatttatgcacaaacattacattttaaactttaatttaagtctttaatacaatttcagctgtttgagatgtatttattttaaaccattttagaaGACCATTACACTAAAATAGCCAGTAGACTGTTTCTATTGATTTCAGTTTCCCACGGTCTCTGTGACAGGAAAGTGTCCTTTTAAAGCTTGCCGATGGTATACAATTGCAAATGTATCCTTTCATTGTTGACCCATTATTGTatggaaagttttattttttaaatcccgttttattttttttcttcttaaagaaCCGTCAGTAGGGGCTGGCGCTGTGggatttttacttttatttttagtttattttctgattcATGCTGCTGCTAGCGTACAGTCACCAAATGGAGTTGACCGCCGGCTTTTTAAACTGTTCCTCACCACCGTGCCTAAGCCTGGACATACGTACCACCACTGTATGCTGCAAATTTGGGCAATAAACTCAGAGGACAGACTGGTTGATGAAACACTCCTGGTTCCTGCACACTTTACAGCCTTTTTTTTT

Function

NR:

description
PREDICTED: CTD small phosphatase-like protein isoform X2

GO: NA

KEGG:

id description
K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019145 True 2384 mRNA 0.43 6 5419981 5436120

Neighbor

gene id symbol gene type direction distance location
AMCG00019144 NA coding downstream 14275 5391065 ~ 5405706 (-)
AMCG00019142 NA coding downstream 70467 5326041 ~ 5349514 (-)
AMCG00019136 NA coding downstream 141265 5269238 ~ 5278716 (-)
AMCG00019135 myd88,LOC104955770 coding downstream 152337 5261715 ~ 5267644 (-)
AMCG00019138 NA coding downstream 176267 5236401 ~ 5243714 (-)
AMCG00019149 zbtb47,zbtb47b,LOC107701620,LOC107733141,LOC107754947,LOC107670424 coding upstream 146108 5582228 ~ 5588342 (-)
AMCG00019150 LOC104941974 coding upstream 199582 5635702 ~ 5671986 (-)
AMCG00019152 NA coding upstream 319285 5755405 ~ 5773697 (-)
AMCG00019153 NA coding upstream 511769 5947889 ~ 5962147 (-)
AMCG00019155 NA coding upstream 690073 6126193 ~ 6145464 (-)
G31572 NA non-coding downstream 741914 4677643 ~ 4678067 (-)
G31558 NA non-coding downstream 812124 4607563 ~ 4607857 (-)
G31526 LOC106599727,LOC106569160,LOC102785278 non-coding downstream 1054580 4365162 ~ 4365401 (-)
G31525 NA non-coding downstream 1054937 4364196 ~ 4365044 (-)
G31523 NA non-coding downstream 1059635 4360107 ~ 4360346 (-)
G31784 gars,LOC107591252,LOC107754935,LOC107682953,LOC107584992,LOC107733158 non-coding upstream 104000 5540120 ~ 5540948 (-)
G31803 NA non-coding upstream 136677 5572797 ~ 5574265 (-)
G31825 NA non-coding upstream 313767 5749887 ~ 5752086 (-)
G31826 NA non-coding upstream 348648 5784768 ~ 5802915 (-)
G31829 NA non-coding upstream 380956 5817076 ~ 5817433 (-)
AMCG00019128 gorasp1,LOC103377203 other downstream 433597 4941059 ~ 4986384 (-)
AMCG00019129 NA other downstream 479314 4932349 ~ 4940667 (-)
AMCG00019109 NA other downstream 1189990 4220443 ~ 4229991 (-)
G31130 NA other downstream 3241331 2177980 ~ 2178650 (-)
G31082 NA other downstream 3336710 1932341 ~ 2083271 (-)
AMCG00019165 NA other upstream 1244505 6680625 ~ 6684301 (-)
AMCG00019209 LOC106600477 other upstream 3411031 8847151 ~ 8901878 (-)
AMCG00019213 NA other upstream 3815032 9251152 ~ 9434114 (-)
AMCG00019272 ppp4r1,LOC106579644,LOC106590337 other upstream 6415988 11852108 ~ 11885571 (-)
AMCG00019284 NA other upstream 6977034 12413154 ~ 12423320 (-)

Expression


Co-expression Network