AMCG00019146 (gars,LOC102797257,LOC107591252,LOC103132552)


Basic Information

Item Value
gene id AMCG00019146
gene name gars,LOC102797257,LOC107591252,LOC103132552
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 5533680 ~ 5542935 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019146
ATGCTGCTGAAGGCTGCGCCCGCCCTGCTCGGCTCCCACGTCCTCCCTGCGGCCCGCCTGCTCGCCTCCCGGCTCTCCTCGGCGCCACACCCGCCCCACGGTCGGCTCCCAAGCAGGCTCTTCTCTCGGTCGGTGCCCTCGCTGAGAAACGAGCGGAAAAGCctgtggcagcagcagcagcttgcGGAAGGACGCAGTATGGACGGCAACATCGAAGAGCTGCTGGCTCCTCTGAGGCAGGCGGTGAAGGAGCAGGGCGACTTGGTGCGGAAACTGAAGGACGACAAGGCCCCCGATGTGGACGTCAGTAAGGCGGTGGCTGAGCTCAAGGCCCGCAAGAGAACCCTGGAGGCTAAGGAGCTGGCCCTGCAGCCTAAGGATGACATTGTGGACAGGCCAAAAATGGAGGACACTCTGAAGAGAAGGTTCTTTTATGACCAGGCATTTGCCATCTATGGGGGCGTCAGTGGGCTGTATGACTTCGGACCAGTCGGCTGTGCTCTGAAGAACAACATCCTTCAGATCTGGAGGCAGCACTTTATTCAGGAGGAACAGATCCTTGAAATCGACTGTACCATGTTAACCCCGGAGCCAGTGCTCAAGACATCTGGCCATGTGGACAAGTTTGCCGACTACATGGTGAAAGATGTTAAGAACGGAGAGTGTTTCCGTGCTGACCATCTTTTGAAAGCTCACCTTCAAAAGCTCATGTCAGACAAGAAGTGTGCTGCTGAGAAGAAGGCTGAAATGGACAGTGTCATCACTCAGATGGACAACTACACCCAGGAAGAGTTAGCTGACCTCTTTGTAAAGTACAATGTCAAGTCTCCGGTCACAGGAAATGATCTGAGCCCCCCCATCTCCTTTAACCTGATGTTCCAGACCTCCATTGGACCAGGTGGAAACATGCCAGGCTATTTGAGGCCTGAAACTGCTCAGGGAATCTTTTTGAACTTCAAACGTCTGCTCGAGTTCAACCAGGGGAAAATGCCCTTTGCTGCCGCCCAGATTGGGAATTCCTTCAGGAATGAGATCTCTCCGCGCTCCGGCCTCATCCGAGTCCGGGAGTTCACCATGGCAGAGATTGAGCACTTTGTGGACCCCAACGAGAAGAAGCACCCCAAATTCCAGAACGTGGCCGACCTGGACATCCTGCTGTACTCCTCCAAAGCCCAGACCAGCGGGCAGTCCGCGTCAATCATGCGGCTGGGGGACGCGGTCGAGCAGGGTGTGATCAATAACTCCGTCCTGGGCTATTTTATCGGGAGGATCTACCTGTACTTGACCAAAGTGGGCATCTCCAAAGACAAACTGCGCTTCCGTCAGCACATGGACAACGAGATGGCCCACTACGCCTGCGACTGCTGGGACGCAGAAACCAAAACCTCTTACGGATGGATTGAGATCGTGGGCTGTGCCGACCGCTCCTGCTTTGACTTGCTGTGTCACGCCAGGGCCACCAAGGTCCCTCTTGTGGCAGAAAAGGCTCTCAAAGAACCCATATCCTTTTCTGGTTTTTtgtattttgtgtttgtaaccTTAACTGCTTCACACAAAACTGTCAACGTGGTTCAGTTTGAGCCCAACAAAGGAGCCATTGGCAAAGCATACAAGAAAGATGCCAAACTGGCAATGGAGTACCTTGCGATCTGCGATGAATGCTACATCACGGAGCAAGAGAAACTCCTCAGTGAAAATGGAGAGTTTGCCATCGAGACCGAAGGGAAGACTTTCACATTAACCAAAGACATGGTCAGTGTCAAGAGATACCAGAAGACTCTGCATGTGGAAGAAGTCGTCCCCAACGTGATCGAGCCCTCCTTCGGCATCGGACGGATCATGTACTCGATTTTTGAACACACATTCCACGTCCGAGAGGGCGACGAGCAGAGAACGtatTTCAGCTTCCCAGCGACAGTGTCTCCCTACAAATGCTCAGTCCTTCCTCTGAGCCAGAATCAGGAATTCATGCCTTTTGTCAAAGAACTGTCTGAGGCCTTGACCAGAAATGGAGTTTCCCACAAGGTTGATGATTCTTCTGGGTCAATCGGGCGGCGATACGCCAGGACGGACGAGATTGGCGTGGCTTTTGGCATCACCATTGATTTCGACACCGTTAACAAGACCCCTCACACGGCGACTCTGCGAGACCGTGACTCCATGCGCCAGATTAGGGCTGAGGTGACGGAGTTGCCCACGATCATCCGGGACCTGGCTAACGGTGCCACTACATGGGCCGAAGTGGAGACCAAGTACCCCATCTTCGAGGGACAAGAGACgagcaaaaaggaaaataccGAGGAATAA

Function

symbol description
gars Predicted to enable several functions, including bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity; glycine-tRNA ligase activity; and identical protein binding activity. Predicted to be involved in diadenosine tetraphosphate biosynthetic process and tRNA aminoacylation for protein translation. Predicted to act upstream of or within glycyl-tRNA aminoacylation. Predicted to be located in several cellular components, including axon; extracellular exosome; and secretory granule. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2D and distal hereditary motor neuronopathy type 5A. Orthologous to human GARS1 (glycyl-tRNA synthetase 1).

NR:

description
glycine--tRNA ligase

GO:

id name namespace
GO:0006426 glycyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004820 glycine-tRNA ligase activity molecular_function

KEGG:

id description
K01880 GARS, glyS1; glycyl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019146 True 2307 mRNA 0.54 17 5533680 5542935

Neighbor

gene id symbol gene type direction distance location
AMCG00019143 NA coding upstream 143318 5366466 ~ 5390362 (+)
AMCG00019139 acaa1,LOC102793903 coding upstream 207731 5320273 ~ 5325949 (+)
AMCG00019140 NA coding upstream 215624 5306413 ~ 5318056 (+)
AMCG00019141 NA coding upstream 228166 5281298 ~ 5305514 (+)
AMCG00019132 NA coding upstream 381663 5147715 ~ 5152017 (+)
AMCG00019147 hhatla,hhatl,LOC107718176,LOC107688529,LOC107722653,LOC107689424 coding downstream 6658 5549593 ~ 5563655 (+)
AMCG00019148 NA coding downstream 23361 5566296 ~ 5570536 (+)
AMCG00019151 NA coding downstream 131042 5673977 ~ 5685061 (+)
AMCG00019156 NA coding downstream 426507 5969442 ~ 5980521 (+)
AMCG00019159 crhr2 coding downstream 768813 6311748 ~ 6312120 (+)
G31690 NA non-coding upstream 350641 5177934 ~ 5183039 (+)
G31663 NA non-coding upstream 406051 5093881 ~ 5127629 (+)
G31622 NA non-coding upstream 503585 4972972 ~ 5030095 (+)
G31566 NA non-coding upstream 785931 4747548 ~ 4747749 (+)
G31461 NA non-coding upstream 1669076 3864189 ~ 3864604 (+)
G31799 NA non-coding downstream 29837 5572772 ~ 5577699 (+)
G31820 NA non-coding downstream 206882 5749817 ~ 5750063 (+)
G31867 NA non-coding downstream 621796 6164731 ~ 6167316 (+)
G31872 NA non-coding downstream 644457 6187392 ~ 6187723 (+)
G31873 NA non-coding downstream 645500 6188435 ~ 6188700 (+)
AMCG00019111 phlpp1,LOC106599727,LOC103135813,LOC101477421,LOC106925929,LOC102225687,LOC103479552 other upstream 1165477 4319596 ~ 4368203 (+)
AMCG00019100 crem,crema,LOC105019435,LOC106578540,LOC108428923,LOC103396770 other upstream 2322790 3190612 ~ 3210890 (+)
AMCG00019096 LOC107727496 other upstream 2433509 3094452 ~ 3100171 (+)
AMCG00019089 NA other upstream 2915628 2520104 ~ 2618052 (+)
G31110 NA other upstream 3386117 2141830 ~ 2147563 (+)
AMCG00019154 ghrhrb,LOC107704523,LOC106560417,LOC107717144,LOC107556991 other downstream 387769 5930704 ~ 5939597 (+)
G32005 NA other downstream 1877566 7420501 ~ 7421083 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other downstream 2802520 8345455 ~ 8384592 (+)
G32286 NA other downstream 3718439 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other downstream 3786544 9329479 ~ 9348819 (+)

Expression


Co-expression Network