AMCG00019148


Basic Information

Item Value
gene id AMCG00019148
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 5566296 ~ 5570536 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019148
ATGGCTCTACCTGTGGATCCGATCGAAGAGCCGCGGTTGTACCAACAAACACTCCTTCAAGATGGACTCAACGACCTACTGGAAACAGACAAATTCATTGACTGTGTTTTAAAGGTCCAGGACGAGGAGTTTCCTTGTCACCGGCTCGTGCTGGCCGCCTGCAGCCCCTACTTCCGGGCCATGTTCCTgtcagacatggaggagagcaAGAAGGGAGAGATAGTCCTTGAAGACGTGAAGCCTGGAATCATGGCCATGCTGCTCAAATACATCTACACGTCGGAAATCAACGTGACGGAGCAGAACGTCCAGGACATATTTGCAGCGGCCAACATGTTCCAGATTCCCTCCATCTTCACCGTCTGTGTCTCCTTTCTGCAGAAGAGGCTCGGCTTGAGCAACTGCTTGGCTATCTTTCGACTCGGTTTGATGCTGGATTGCCCACGTCTTGCCATTAGTGCCAGAGACTTCATTTGTGACCGTTTCCATTTGATATTAAGAGACCAGGACTTCCAGCAGATGTCTCCCACTGAGCTGGCGGCCATCATCACCACTGATTCCCTCAATGtggagaaggaagaggtgaTCTTTGAAGCTCTGATGAAGTGGGCTGCTCATGACAAGGACAACCGGATAAAAGTCTTGCCGGATCTGTTTGACTGTGTGCGTTTCCGACTCGTGCCCCGTGACTACTTTGCCAGCAAAGTGGAGAAGCATGAACTTGTGAAATCCAACCCAGAGCTTCTGAAAAAGCTGCAGATGGTCAAAGATGCCTATGAGGGAAAGCTTCCCGAAGTAAAGAAAGCTGAAGACAAGGTGTCTGAGGCCAATGGAGATGTAGTGAAGGAAGAAGAGAGTCTACTTCCGGGGATATTGAATGACAACTTGAGATTTGGCATGTTCCTGAAGGACTTGATGTTCATGGTCAGTGCCACAGGCGCTGTGGCCTATGACCCAGCAGGAAATGAATGTTACGTGGCCTCTTTATCTACTCGGATTCCTAAAAACCACTGTAGTCTGGTCACCAAAGAGAATCAGATATTTGTTTGCGGAGGACTTTTCTACAATGAAGAGATCCAAGACGATCCACTGAGCTCCTACTTTCTGCAGTATGACCCCTTGGACTCAGACTGGTTAGGCATGCCGCCCCTGCCCTCTCCACGCTGTCTGTTTGGCCTCGGCGAGGGGGAAAATTCCATCTTCGTTATCGGAGGAAAGGAGctgaaggagggagagaaaactCTGGACTCAGTCATGATCTATGACAGACAGTCCTTCAAATGGGGAGAGTCCGATCCACTTCCTTACGCAGTGTATGGCCATGTGACCGTGTCGCACAATGGGCTGGTCTATGTAATAGGAGGGAAAGGAGATAACAAgaAATGCCTGAAGAAGGTGTATGTGTATAATCCCAAAAAGTTTGAGTGGAAGGAGCTGGCTCCAATGAAAACGGCCAGGTCGCTGTTTGGTGGCACAGTCCTCAACGACAAGATCTACGTGGCGGCAGGAGTGACCGACACCGGCCTCACCAATGCTTTGGAAGTGTATGACATTGCCCGGAACAAGTGGGAAGACTTCACCGAATTCCCCCAGGAGAGGAGCTCTCTGAGCCTCCTGAACCTGACCGGCTCTCTCTACGCCGTCGGTGGCTTCGCTATGATGCCCAACGAGTCTGAGGAACTGGTTCCCACAGAGATGAATGACATCTGGAAGTATGATGAAGACGCAAAGCAGTGGACAGGCGTTCTCCGAGAGATTCGCTACGCCTCGGGGGCCACCATACTTGGTGTGCGTCTGAACACTCTTCGTCTGACCAAGATATGAGAGCCAGAGCAGTGTGGTGCCgagggggggggttgtgcaGTGTTGTGAAGTCTAAGGAAGTGTGAACAAACAATTCACCGCACAAGTAAACATCGCTGCAATGTCAGTAAAGTTCACAGTACACCTGAATGATACATGATAGTCTAATAAATAGTATGTGGACAGGTTAGCGATAAAGTTACATTATTCTTCCAAGACTGTATTATTAGAGAAAGGTTTAACATTCATTCAAATGACTTCTTAACCCTCAAATTGAAACTGAAGTCCCAGTCTGTTACGCTTCAGCTGTATTCTGAACTCTGTCATTTTTCTGTGCACCGTAAGGAAAGCTCATTCTTATGGAAATTaaacgtttctttttttttaatcttctgcTTTTAATGGAGAATGTTATTTcactaaaacatgtattttgataATAATATAGGCTACAAGATATTCCTGTTGTCTGAAAAAAAGTTCTAAGACTGACCTTAAAGTTTCTGCATTTCAGTGAAGACATGTTTCTGTACTCCAGTCCTGAGGTGTAAAACGTCATATTGTATCTCTGACTTGAAGAATTTAATAAACGAG

Function

GO: NA

KEGG:

id description
K10473 KBTBD5_10; kelch repeat and BTB domain-containing protein 5/10

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019148 True 2397 mRNA 0.47 6 5566296 5570536

Neighbor

gene id symbol gene type direction distance location
AMCG00019147 hhatla,hhatl,LOC107718176,LOC107688529,LOC107722653,LOC107689424 coding upstream 2641 5549593 ~ 5563655 (+)
AMCG00019146 gars,LOC102797257,LOC107591252,LOC103132552 coding upstream 23361 5533680 ~ 5542935 (+)
AMCG00019143 NA coding upstream 175934 5366466 ~ 5390362 (+)
AMCG00019139 acaa1,LOC102793903 coding upstream 240347 5320273 ~ 5325949 (+)
AMCG00019140 NA coding upstream 248240 5306413 ~ 5318056 (+)
AMCG00019151 NA coding downstream 103441 5673977 ~ 5685061 (+)
AMCG00019156 NA coding downstream 398906 5969442 ~ 5980521 (+)
AMCG00019159 crhr2 coding downstream 741212 6311748 ~ 6312120 (+)
AMCG00019160 crhr2,LOC102776588,LOC106599903 coding downstream 784724 6355260 ~ 6380345 (+)
AMCG00019162 pth1r,LOC107671674,LOC106599896,LOC107660418 coding downstream 914542 6485078 ~ 6566493 (+)
G31690 NA non-coding upstream 383257 5177934 ~ 5183039 (+)
G31663 NA non-coding upstream 438667 5093881 ~ 5127629 (+)
G31622 NA non-coding upstream 536201 4972972 ~ 5030095 (+)
G31566 NA non-coding upstream 818547 4747548 ~ 4747749 (+)
G31461 NA non-coding upstream 1701692 3864189 ~ 3864604 (+)
G31799 NA non-coding downstream 2236 5572772 ~ 5577699 (+)
G31820 NA non-coding downstream 179281 5749817 ~ 5750063 (+)
G31867 NA non-coding downstream 594195 6164731 ~ 6167316 (+)
G31872 NA non-coding downstream 616856 6187392 ~ 6187723 (+)
G31873 NA non-coding downstream 617899 6188435 ~ 6188700 (+)
AMCG00019111 phlpp1,LOC106599727,LOC103135813,LOC101477421,LOC106925929,LOC102225687,LOC103479552 other upstream 1198093 4319596 ~ 4368203 (+)
AMCG00019100 crem,crema,LOC105019435,LOC106578540,LOC108428923,LOC103396770 other upstream 2355406 3190612 ~ 3210890 (+)
AMCG00019096 LOC107727496 other upstream 2466125 3094452 ~ 3100171 (+)
AMCG00019089 NA other upstream 2948244 2520104 ~ 2618052 (+)
G31110 NA other upstream 3418733 2141830 ~ 2147563 (+)
AMCG00019154 ghrhrb,LOC107704523,LOC106560417,LOC107717144,LOC107556991 other downstream 360168 5930704 ~ 5939597 (+)
G32005 NA other downstream 1849965 7420501 ~ 7421083 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other downstream 2774919 8345455 ~ 8384592 (+)
G32286 NA other downstream 3690838 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other downstream 3758943 9329479 ~ 9348819 (+)

Expression


Co-expression Network