AMCG00019150 (LOC104941974)


Basic Information

Item Value
gene id AMCG00019150
gene name LOC104941974
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 5635702 ~ 5671986 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019150
ATGTATGAAGCATGTTCTAGAAGAAGACCAGAGCCGGACACAAATCAAAAGTCAAGCACGGTCGGGCGACCTGTCCCTTTAACGCGGGTCCTCCACGTTCCCGGCAGCCACCGGGAGGGAGGAAGGACCTCCGCGACGCCACCGCAACAGCGCACCTCGACTCGCAGCCATAACCACCCAATTCCCGGGACCTCGTTCATGATGGGGGTTAAAGACCGCCCCCAGTGCTACTTCGATGTGGAAATCAATAGGGACCCAGttgGACGCATTGTCTTTCAACTTTTTTCGGATATCTGTccaaaaacaagtaaaaattTTCTTTGTCTGTGCACAGGTGAGAAGGGAACTGGCAAAAGTACAGGAAAGAAGTTGTGCTATAAGGGCTCCACTTTCCATCGAATTGTGAAGAGCTTCATGATCCAGGGAGGGGATTTTACTGAAGGTAATGGAAGAGGAGGTGAATCAATATACGGTGGCTACTTTAAAGGTTTTGAGGTGATCAAACAAATCGAGAATCTGAAAACTGACTCTGCCAGCCGACCTTATGCAGACGTGAGGGTGATTGACTGTGGCCAGTTAATAACAAAATCTGCAAATGATGTTTTGGGGTGCAAAAGAAAGCTACTGTCCTGTTCATCAGACAGCTCTGTCAGTTCTCTGGATTCCTTGTCGTTGTCCTCAACCTCCGAGTCCGACAGCGACTCGGAGGAGAAGTACAGGCGCCGCAAGAGGAAAAGGCCTGCAAAGAGCAGGCATgccaagaggaggaggaaggagggaaAGGGAAAGGAGAACAATCAGAGACCTTCATCAAGCCAAAGAAAACCGGAAGTGGTCGAGGATGAAAAAGAGAAGGACTTGAATGTGAAAAGAGATAAGCCTGTGGTTCGACCTGAAGAGATTCCCCCGGTGCCAGAGAACAGATTCCTACTCCGCAGAGACGTGCCCATCCAGGTGGCTGAACCCGAGCAaacaaaacagGTCATTTCCTCAATAACAAAAGATCTCAAACCAGCTGTAACAAAATCCGGACGTAAAATCAAAGGACGAGGTACAATGAGATATCACACTCCTACGCAATCGAGGTCCCGGTCGAAGTCTGAGGATGATCGAGGAAGCAGCGAAACCCCCCCTCACTGGAAGGAAGAAATGCAGAGAACGAAGACGTACAAACCGCCCAGTGGAGAGAAATGGAGTAAAGGAGACAAATTGAACGACCATCATTCAAGCAGATGGGAAGACAGAAGTGCCTCGCCGTGGTCAAGGTCCTGGTCACACGAGTACTTCTCTGATCGCAGCAGTGAGAGGTCCAGCGAACACAGGACACCcagaaaagagaagaagaaaactaaacacaagAAGAAgtcaaaaaagcaaaagcattcCAAGAGGAGTAAAAGGTTGAAAAGCAAAGCCAAAGATTCTCCCCTGTCCGAAGATGGGTCGTCCCTCTCTTCGAGCAGAAGATCAAAGATCTCCAGCAACCACGAAAGGaggtctcgctctctctcaacCTCCTCGAGGCATTCCTCCAGGAAAGACTGGACGGGATCCGATAAAAAGCATCGTTCCTCTCCGTCTTCCAAAGGCTCCCGTTCGTATACACGGTCGAAAAGCAGGTCAAGATCGTACTCTAGAAGTAGATCTAGAAACCATTCAAGATCGAGATCAAGGTCTTCCTCAAGGTCAGGAAGTCTGTCCAGGTCCCGATCCCGATCTCACAGAAGTACATCTTCCAGATCGTCAAGAAACACTCCGATTAACGAGAGTAACAAAGCAAAAGCAGATGCTTCAAGACCAGCCACAGTTACCAATGAGAAAGCGGCGCCACCAGCAGCCACTGAGAGTGCTCCAGTTTTACCTATAAGTGATAGTCCACCTCCTTCTCGATGGAAACCTGGACAAAAGCCTTGGAAGCCTTCCTACGTCCGCATTCAAGAGATTAAAGCAAAGACGGTGCCTACTCCGCTTGCCCAGACTAGCTTAAAAACAAAGAGCGTTAAAGAAAAGGATCGCATCTCGTCCCACTGCAGCCAGTACAGGAACTCAGATAGTGAAAGAAGCAAAGACTCCAGGAATTACAGTGACAGGAGCTATGAATATAAGAGAAGGTCACACAGCAGGTCTTCCAGGAGTAGATCATACAGCAGGTCTTACAGTAGATCACAGAGCAGGAGCCGCTCAAGCTCAAGATCGGGCTCCCGAGAGAAATATGAAAGTAGGTCTTCCTCCTACAGCAGATCAGATTCATACAACTCGTACGatgatgagaaaaataaaaaatcaagcTCTGTATGGAGGAAACTATACAATAAAAGGCAAGAAAGCAGCCCCGAAGCTACAGTTGAAGACAAGCATGTGGCCAACAGTAGAAAATCTTCTCTAAAGAAGGACAGTCGCAGCTTATCCTCATCGGAGTATTCTACCGACAGTGAAAACAGCCAAGTGGAAAGAAGCAAGAAGGACGATACCGActcgaagaggcaaaagagtaAAACTGATTCTCCGTCAGAAACGGACAGCGTTCATCCTGCTGATCCCAAACTTGACGAACCAAGCGTTGACCAAGCATTGGCTGTAGAGGGGAAGAAATCCAAGTCGGGCTGGGACAGTGACAGCGACAACTCCAGAAAGAAGGTAACCAATAAAGATCAGTCATCTGCGGCACAGCAGCCAGATCCCAGTAGGATGGAGGAGAAATCTGAAAACAGCAAGGCATTTCCCATCAGTAAATGGGACTCCGAGAGTGACTCTGAGGGGGTGGCAAAAAAAAGCAACGCAGATGATTCTAAGCGTTCCTCCAGCAAAGAAGAAGGGGAAGCCAGCTCCGAGACGGAGAGCGAAGGCCAAATATCGCTACACAGCAAAACAAGCAGAGTATCGGTGAATGCATCGCCTGCAGATTCAGACGCCCATATAATGACTGCTGTACAGACCGAGCATTTCCCTGTGGCTGAAGTCTCTGAGGTGGTAGTAGTCAGTGAAAAGCATAAGAGCAGAAAAAAGGCCAAGCGGAAGCACAAGCACAAGAAAAGGAGTTCAGCAAAGTCTGAGGAAAGGGCAAAAAGCAAATCCAAAAGCAAGAAGTCAAAGAAGAAGCATCAGAAGCCCAAGGAGACTTTCCACTGGCAGCCTCCCCTGGAGTTtggtgaagaggaggaggaggagcagcaatCCCAAAAGAAGCAAGGTAGCCTGAAAAAGGGTGTATTGAAGGAAACCCCCTTAAAGCCCATTAGAAGGAGGACTTTATCAAAATGTGAAGATAACGAGGTTATCGTTATCACTGAAGAAAGTCAGAAGTTGCCCAAAGAAAAATGCTCATCGCAAGCAGACGCTCACAGTGTGAAAGATATTACTGAAAGGACCAAACCAGGGCACCAATCAAAGCAGTCCTCTGTCAGTGGGACAAGTCCAAACAAGAAAGAGACGACAGACTTAATAACCACTCGAACCAATTAtgtcaacacaaacaacaaaccgTTACCAAAGTCCCCAGATCAGCCAGAGCCATCTGATGATAGTATGGAGATCTGTACCCCTGAGCACCACACCCCAGATAGAAATGATTTTTATGGTATTACTGAAATATCAGAAACCATTTCTCACAGTAAAGAGTCACCTCTAGGTATTTCGAAAGATGCTTTCAGATTAACTCCAGTGGACCATTCCAAGGTGTCATCTTCAACTCTGTTGGTAAATAATTGTTCTGGGGAAGAAAATGCCAGAACTGAAGTCTCCGTAGCAGTGACGGATCCAAAATGGAAGCCTCTCAAAGGCATTTCTAATCAGCAGCCAGTTGGCATCAGGAATTTTGAAGTTAAGAGTATAGATACCTCCGATCCAGGGGAAAACAAGCCGCAGGGCCTCCGTATCGAGATCAAAAGCAAGAGCCGCGTGCGACCTGGATCTCTGTTTGACGAAGTCCGGAAGACAGCCAGGCTAAATCAGAGACCCCGGAATCAGGAGAGCTCGAGTGAGGAGAGGTCTCCATCCGTAGAGGACAAGGGTAAATCTCGGAGCCGGACCAGGTCACACAGCAAGTCCAGATCCAACGAGGTCCAGAACCAGATCCCTGTCCTACAGCCGATCACGGACCCGGTCGAGAAGCTCAAGCTATTCCTACAGATCCAGGAGTTACAGCAGGAGTCGCAGCAGGAGGCGGTACAGCAGAGGTCGGTCCAGGACTCGGAGCAGCACTTACCGAAGCTACAGGAGTCGCAGGACGTACAGTCCTACAGCTACGACAGCTATTACAGCCGCAGTCGCAGCCGCAGCAGTCGTAGGAGGAGTGACAGCTACAGGAAGTCGAGGAGCTACGACCGCAGATCCAGGTTTGGCCAGGTTCCCAGGTGTGGCCGGGCGTGGTACTTCAATACGCAGGAGAAACCTCTGGGGGGCAGCAGTAGTCTGGAGATCTTGTCTGGCCTGACTCGGTGCAGCACAAGCCTGCTGGCCTCTGAGCACAGTCCCATCCACCTGCCTGAAACTGGTGGGCTTCCCCAGGCCCCCGTGCCTGTACCAGCCCAGGACAGCAGGACGCTGTTCTCCATTGCCTCAGTGCACAACGCCCCTCAGATCAGCCCAGTCGCCTCCAAGGCTGTGGACCTGGCGTTTTCTACACAATAG

Function

NR:

description
PREDICTED: NK-tumor recognition protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019150 True 4629 mRNA 0.49 17 5635702 5671986

Neighbor

gene id symbol gene type direction distance location
AMCG00019149 zbtb47,zbtb47b,LOC107701620,LOC107733141,LOC107754947,LOC107670424 coding downstream 47360 5582228 ~ 5588342 (-)
AMCG00019145 LOC103360289 coding downstream 199582 5419981 ~ 5436120 (-)
AMCG00019144 NA coding downstream 229996 5391065 ~ 5405706 (-)
AMCG00019142 NA coding downstream 286188 5326041 ~ 5349514 (-)
AMCG00019136 NA coding downstream 356986 5269238 ~ 5278716 (-)
AMCG00019152 NA coding upstream 83419 5755405 ~ 5773697 (-)
AMCG00019153 NA coding upstream 275903 5947889 ~ 5962147 (-)
AMCG00019155 NA coding upstream 454207 6126193 ~ 6145464 (-)
AMCG00019158 NA coding upstream 485879 6157865 ~ 6161502 (-)
AMCG00019157 NA coding upstream 493197 6165183 ~ 6191211 (-)
G31803 NA non-coding downstream 61437 5572797 ~ 5574265 (-)
G31784 gars,LOC107591252,LOC107754935,LOC107682953,LOC107584992,LOC107733158 non-coding downstream 94754 5540120 ~ 5540948 (-)
G31774 NA non-coding downstream 123772 5418996 ~ 5511930 (-)
G31572 NA non-coding downstream 957635 4677643 ~ 4678067 (-)
G31558 NA non-coding downstream 1027845 4607563 ~ 4607857 (-)
G31825 NA non-coding upstream 77901 5749887 ~ 5752086 (-)
G31826 NA non-coding upstream 112782 5784768 ~ 5802915 (-)
G31829 NA non-coding upstream 145090 5817076 ~ 5817433 (-)
G31831 NA non-coding upstream 230386 5902372 ~ 5902637 (-)
G31833 NA non-coding upstream 251728 5923714 ~ 5927593 (-)
AMCG00019128 gorasp1,LOC103377203 other downstream 649318 4941059 ~ 4986384 (-)
AMCG00019129 NA other downstream 695035 4932349 ~ 4940667 (-)
AMCG00019109 NA other downstream 1405711 4220443 ~ 4229991 (-)
G31130 NA other downstream 3457052 2177980 ~ 2178650 (-)
G31082 NA other downstream 3552431 1932341 ~ 2083271 (-)
AMCG00019165 NA other upstream 1008639 6680625 ~ 6684301 (-)
AMCG00019209 LOC106600477 other upstream 3175165 8847151 ~ 8901878 (-)
AMCG00019213 NA other upstream 3579166 9251152 ~ 9434114 (-)
AMCG00019272 ppp4r1,LOC106579644,LOC106590337 other upstream 6180122 11852108 ~ 11885571 (-)
AMCG00019284 NA other upstream 6741168 12413154 ~ 12423320 (-)

Expression


Co-expression Network