AMCG00019154 (ghrhrb,LOC107704523,LOC106560417,LOC107717144,LOC107556991)


Basic Information

Item Value
gene id AMCG00019154
gene name ghrhrb,LOC107704523,LOC106560417,LOC107717144,LOC107556991
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 5930704 ~ 5939597 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019154
AAGTTCCACTGTACCAGGAATTATATTCACATAAATCTGTTTGCATCGTTCATCCTGCGGGCGAGCGCTGTGTTCATTAAAGATGGCGTACTCTTTGCAGATGAAAACATGGATCATTGCTCCATGTCGACGATATATATCTTCACTACATTCTCCACCTCCAAGTGGAAATTAGTTGCTTGCAAATCTGTCGTTGGGTTCTTTCAGTTTAGCATCTTAGCAAATTTCTTCTGGTTGCTGGTGGAAGCTTTGTACTTGCAGACGCTCCTGGCgtttacatttgtttcacagaaaaaatatttctggtGGTACATCTTAATTGGATGGGCGGTGATGATTGTGTGGGTCATCACTCGGATTTATTACGATAACCGAGGgAGGCTTGCGAAATCAACCTTATTTCTCATTCCACTGTTTGGCGTGCACTATGTGGTCTTTGCATTCTTCCCTGACAACACTGGAGTCGATGCCAGGCTTTATATCGAGCTTGGATTGGGCTCTTTCCAGggtTTTGTTGTGGCTTTGCTCTACTGTTTCTTGAATGGAGAGGTCCAGGCTGAAATGAAGAAGAGGCTGGGAAAGTGTCACAGCCAGGGTTACTTGACTTTCACACAAAAACGCAAACCCCTGTTCACAGAGAGCAGC
>TU39841
cagAAAGTTCCACTGTACCAGGAATTATATTCACATAAATCTGTTTGCATCGTTCATCCTGCGGGCGAGCGCTGTGTTCATTAAAGATGGCGTACTCTTTGCAGATGAAAACATGGATCATTGCTCCATGTCGACGGTTGCTTGCAAATCTGTCGTTGGGTTCTTTCAGTTTAGCATCTTAGCAAATTTCTTCTGGTTGCTGGTGGAAGCTTTGTACTTGCAGACGCTCCTGGCgtttacatttgtttcacagaaaaaatatttctggtGGTACATCTTAATTGGATGGGGT

Function

symbol description
ghrhrb Predicted to enable G protein-coupled peptide receptor activity and peptide hormone binding activity. Predicted to be involved in adenylate cyclase-modulating G protein-coupled receptor signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and cell surface receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in isolated growth hormone deficiency. Orthologous to human GHRHR (growth hormone releasing hormone receptor).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019154 True 645 mRNA 0.44 7 5930708 5939597
TU39841 False 292 lncRNA 0.42 2 5930704 5931941

Neighbor

gene id symbol gene type direction distance location
AMCG00019151 NA coding upstream 245643 5673977 ~ 5685061 (+)
AMCG00019148 NA coding upstream 360168 5566296 ~ 5570536 (+)
AMCG00019147 hhatla,hhatl,LOC107718176,LOC107688529,LOC107722653,LOC107689424 coding upstream 367049 5549593 ~ 5563655 (+)
AMCG00019146 gars,LOC102797257,LOC107591252,LOC103132552 coding upstream 387769 5533680 ~ 5542935 (+)
AMCG00019143 NA coding upstream 540342 5366466 ~ 5390362 (+)
AMCG00019156 NA coding downstream 29845 5969442 ~ 5980521 (+)
AMCG00019159 crhr2 coding downstream 372151 6311748 ~ 6312120 (+)
AMCG00019160 crhr2,LOC102776588,LOC106599903 coding downstream 415663 6355260 ~ 6380345 (+)
AMCG00019162 pth1r,LOC107671674,LOC106599896,LOC107660418 coding downstream 545481 6485078 ~ 6566493 (+)
AMCG00019163 NA coding downstream 667375 6606972 ~ 6668145 (+)
G31820 NA non-coding upstream 180641 5749817 ~ 5750063 (+)
G31799 NA non-coding upstream 353005 5572772 ~ 5577699 (+)
G31690 NA non-coding upstream 747665 5177934 ~ 5183039 (+)
G31663 NA non-coding upstream 803075 5093881 ~ 5127629 (+)
G31622 NA non-coding upstream 900609 4972972 ~ 5030095 (+)
G31867 NA non-coding downstream 225134 6164731 ~ 6167316 (+)
G31872 NA non-coding downstream 247795 6187392 ~ 6187723 (+)
G31873 NA non-coding downstream 248838 6188435 ~ 6188700 (+)
G31874 NA non-coding downstream 249712 6189309 ~ 6189552 (+)
G31877 NA non-coding downstream 323040 6262637 ~ 6262840 (+)
AMCG00019111 phlpp1,LOC106599727,LOC103135813,LOC101477421,LOC106925929,LOC102225687,LOC103479552 other upstream 1562501 4319596 ~ 4368203 (+)
AMCG00019100 crem,crema,LOC105019435,LOC106578540,LOC108428923,LOC103396770 other upstream 2719814 3190612 ~ 3210890 (+)
AMCG00019096 LOC107727496 other upstream 2830533 3094452 ~ 3100171 (+)
AMCG00019089 NA other upstream 3312652 2520104 ~ 2618052 (+)
G31110 NA other upstream 3783141 2141830 ~ 2147563 (+)
G32005 NA other downstream 1480904 7420501 ~ 7421083 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other downstream 2405858 8345455 ~ 8384592 (+)
G32286 NA other downstream 3321777 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other downstream 3389882 9329479 ~ 9348819 (+)
G32293 armc4 other downstream 3430301 9369898 ~ 9628662 (+)

Expression


Co-expression Network