AMCG00019157


Basic Information

Item Value
gene id AMCG00019157
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 6165183 ~ 6191211 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019157
GTCTGTTTTGAATGTAGCCTGGATGAAGCAGATTGATAGAGTTTGTACGGCTGTATCACTTTGAAATAAAGTCACCAAGCGTCTGCCTTATATTCAGAGTTTATGAGAAACGTTTTGTGttcaccattttattttcaagatgAATAACTCTGTGGAAGAGGTCGCCGCCTCGTTAGTAAGGGAATATCTCAGTCGGAAGGGACTGAAGAAGACTATGACCAGCATGGATCAGGAACTTCCCCGCACAGACACCAGCATCAGCAACAGGAGCGATCTTCGCAGGATCCTGCATTTAGAGTCTCTTTATAAAAAGAATAAGACTCAGGAGGCCCCTCTGAAAGCACTGCTGGAGGTAATTGTAAAACACCACATGGAGGAAAACACTGGTATCAACGCTAACATCAGCAGGGGAACAGAACAGTGTGCATTTTTACTGCAGCAACAAGACATAGTGCCCAAGTCTAAGTCCACAGCATCGTCATCTGTTAGTATGTGCGATGTATCAGACGAGGAGAAAGGAGGAAGCACAGCTGTGTCGGACTGGAGTAAAACTGATGTTTACAGAGCTGCTGAAGAGGCCATTTTGCCTTCTCACAAGCTGCTCTCACCACAGACATCTCAGAGTCGCTCCACAAAGCCTCCGAGGCGCATCTTGAGCCGCAGCTCGTCCTCCGAAGGCGAGAGAGATGGAAACACGGTGCCTTCATATGTAGACAACGAGAACAGATTTGGTGTTTCTCTAGAAAAAAAGAATGCGTTCGCAGAgatccagaaaaacaaaagcaatcgCATTCTCCGTGGGATGATGTCGGGGCCCATTGCCAGTTCACAACAGgaaaataataaaaagcgaCCACTTAGAAGGCCATCGGGATCCAATCTTATTCCTCAGCTGAGAAATGAGGAGCCGAAAAACGATTGTACTTCATACCTGAGTGAAGCCGCCCAGATGACGGTTCAATCTAACTTGAACGCGGCTGTGGGAGATCCCCTTTCAAGTGTGTTCAGTGAAAGGGAACCGGGCAAACGCCACCGAACGCAAGACCAACACAGACCCAGGCTGCAGGCTGACCCTACAGACATGCGTGGCTTGCAGCAGCTCGACAACGTGGGGAAGGAGCTGAGAAACACGGACAGAGGTGAAGTACAATGGAAGGACAAGTTTCCCAAgaagATGTCAGCATCCAGTCCTAAAGTAGAAGATATGCCTCTGAAGGCGATGAAACTAgATGATATCAATGATGAAGAGGATTTTTGCGAGGTTACCAGTGTACCGATTCTGTCCCGTGCTTCCCAGCTCAATGTGGATTCTCATCCAATAGACCTACGTCTTGCATGTgACCTCAAGGAGCTTTTGTTCGGCTCCAGTCTGAATTGTTTCAACGAAGAGTGGAAGGGTGGCCCTTGCGGAGTGCTGGCTTCTGTCCAAGCCTGTGTCCTGCAGAAGCTGCTGTTCGAAGACACACGAAGCAGCTCTGAAACACAGAAACTGCAGCCATCCAATATCTCAAGAACCAGGTGCCTTGTTTCGGCGGTTGCGGAAATCTTATGGCGAGCAGGAGAACAGAAAAGAGCTATAGTTGCACTATCTTTTCGCAGAAGACATTTCATTCCAGCTGGAAGATATAAAGCAGACGGGATTCTGGAAACGATAACGCTGAATACTTTGAACAACCTAGACGACTTAAAACTGTTTCTGGAACACAATATCCATCAGttCGAGCTGGGTCCCTCTGGGTGCATTTTGCTCGTTATATCAGCCATTCTCTCCAGATCTATGGAACTGGTGAGATTAGATTTTGATGTGCCTTCAAACACACTCATTGGAGCCCATGGTTACTGCACACAGgAACTTGTTAATCTTCTGCTCACTGGGAGAGCCGTTTCAAATGTGTTCAACGATGACATCGAACTGGATTCTGGAAATGGAAATATCACTCTTCTGAAGGGAGTCAAAGGGCGGAGCGACATTGGGTTGCTGTCTTTGTTTGAACATTACAACGTGTGCAAGGTGGGCTCCTATCTGAAGACCCCCAAGTACCCCATATGGGTGATATGCAGTGAAAGCCACTTCAGCGTGCTCTTCTGCACACGCAAGGAGCTGATGAACGACTGGAGGATCGAGAGGAGATTCGACCTGTATTATTACGACGGCCTAGCGAATCAGCAAGAGGAAATCCGCCTAACCATCGTCACATCTCAAAATTGTAGTCCGGATGTAGACAATGACCTGGTACCTCCTCTTGAGCACTGCATCAGGACAAAGTGGAAAGGCGCCATGGTCGACTGGAATGACAGCGAACCGATTCTTTGACGTAATTGTGACCCCCGAGCAGAGAAACGGACCGACATCAATTGGCTCGTATGTCATCTTTGGGACAAACCTGACAGATAAGAAATGAAACCGGAAACACTGCTGGCTAAGACATTGAACcctatgctttaatttatttatttttatacgaATAAgcgtattattattgtcatcatcatcatgtagTCTGTAATCATtctaatgtatgtattcagtCTTTATGATTTGGGAATCTGGTTCGCTTGATGAGAAAGGGATGAATTCTTCCTACTGACTGTGTTTTTAGGGtttatctgtctttttttacCAGCTGAATTAGTATCCTTCTTTCCCGCCCACACAGGGGTAAATAATCAATCAAGATGCTGTGCCACTCTGTGACCCTTTCAGAAATGTGTCCAAAccgttaattattatttttcaaacagtttgtatatgtacagtatttgaGAATTACTATAATTGTGCCTTGTTGTTATCCAtttatgtttacatatataccttattttcttatttattactttcaaatacattattttaattcaaactttattttatatgattttaattaaaagcagacttttgttttgggaaaaaaagACTGCAGGGATCATTGTTTACATTGTGCCTATTGTTGTGTAATGCTCTGCAGTAGGGTCAGCCACAGGGGAAtctattttctctttctatttACAGTAACggcatattatatatttctatgaGTTCCATAGATTCATGTGTCAGTGAGGTCAGCAGGATACCATGAAGTCCTGCATTTGCTTTGTCACTTTGTTTTATGTAACGCCAGCAGGTTCACTGTGAGGACACTTTGAATTTTTGACTGCAACAGCTTCGTATCCTCTTCATGTTAGTGAAGTCACAGATAAAAGGAAATATATGGCACTATGAGGAGGAATTGGTCGTTATTGAGGTATGGTTGCCAAGATGTTGTTGGAAATCCCTCCCAGCATCTCAGCAATGTCTTTGAATACTGGgctgtaaataaaaagagaaaagaaaagcattaagTCCTAAATGTGggaataaagaaacaaagactAAGCATCACGTGTGAGAATAGTAAATCTGATAGGCTTCACATAAGTAAATAGACACCAAATGAATGTTCTGGAACCATCCATAACACTAACAGAGTAGGAATCGGTTCAGTACTTTGtgtagctttttgttttttacaaggCATCCATAACTATAACTTTGTGTAGATCAGATCAGGATTACAAACCATTTCTGATGCAAGATATTGAATTGTAACACCAGGAAcctcttctgttttgtttgcattgcacACAGTGTGAGTTGTGGCGCTGTCTTTCATGACAAGGCCTGTATTGGAGTAGATCACCATTTGCATGCAGGCAGTGCTCTTTCTTTAAGGCACTTCAAGTCTCACGCAGAGTTCACACATTATGTTGTAGGCCACCAGCTGTGACCTCCACCGGCTTGAACTGCACACACAGATTGATGAACAGGTGGAAAGATCGCAACAGGCATGAATAAATATTGTCTGTAAGTTGTGAAAAACACGACCTCACCAGAAACAGTGAACGTAGGGAACATCTATGTCCTATTGCAGTTGATGGGTGAAATGTGTTTGGTTCAGAAATAGTTTACAGACTACCTTGCCATGCTGTGTATAGAGATCATCTGATGATGGTTCACCTGGAACTGATCTTATGTGATCAAGTGACCACGCTCCTCtcagcactatatatatatatataccttaaGTGTTGGGTATCAATGACTCGCATCAACCGTTGTCTTTTGGCTTCTTTTAAAGTGAGAGAAGCTGCTCTTATATAGCTTATATAGCAGAGTAACTGCACAGATGGGCAACAGAATAAGCAGTATATTGGAAATGTCTCGCTGGCTTCTCCCATCATAGTGGCTGCAAGTTGTGCCTCTTTGCAAAGTTCATGGGATTTTCTGCTTTCTGCAGCTATAATAAGTGTTTATTcccaaaatatgaattaatataatgtatactgTAATTCAATACCAAGAAAAACATGTGCTGCTGAAGTCTGtgaataaaaacatgctttgtgaGCACAATGTGAA

Function

GO: NA

KEGG:

id description
K22647 MINDY3_4; ubiquitin carboxyl-terminal hydrolase MINDY-3/4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019157 True 4399 mRNA 0.43 18 6165183 6191211

Neighbor

gene id symbol gene type direction distance location
AMCG00019158 NA coding downstream 3681 6157865 ~ 6161502 (-)
AMCG00019155 NA coding downstream 19719 6126193 ~ 6145464 (-)
AMCG00019153 NA coding downstream 203036 5947889 ~ 5962147 (-)
AMCG00019152 NA coding downstream 391486 5755405 ~ 5773697 (-)
AMCG00019150 LOC104941974 coding downstream 493197 5635702 ~ 5671986 (-)
AMCG00019161 myl3,LOC107660402,LOC107567878,LOC107711693,LOC107593749,LOC107727541 coding upstream 243301 6434512 ~ 6451611 (-)
AMCG00019166 tmie,LOC107660419,LOC106569331,LOC102776014 coding upstream 424439 6615650 ~ 6632844 (-)
AMCG00019164 NA coding upstream 478742 6669953 ~ 6678328 (-)
AMCG00019170 NA coding upstream 586193 6777404 ~ 6781144 (-)
AMCG00019174 atg9b,LOC106599848,LOC107100460,LOC106569346 coding upstream 678303 6869514 ~ 6897553 (-)
G31875 NA non-coding downstream 646 6163989 ~ 6164537 (-)
G31845 NA non-coding downstream 178387 5964264 ~ 5986796 (-)
G31833 NA non-coding downstream 237590 5923714 ~ 5927593 (-)
G31831 NA non-coding downstream 262546 5902372 ~ 5902637 (-)
G31829 NA non-coding downstream 347750 5817076 ~ 5817433 (-)
G31878 NA non-coding upstream 71426 6262637 ~ 6262838 (-)
G31882 NA non-coding upstream 73480 6264691 ~ 6265136 (-)
G31931 NA non-coding upstream 496292 6687503 ~ 6687816 (-)
G31932 NA non-coding upstream 497649 6688860 ~ 6689516 (-)
G31933 NA non-coding upstream 498625 6689836 ~ 6692303 (-)
AMCG00019128 gorasp1,LOC103377203 other downstream 1178799 4941059 ~ 4986384 (-)
AMCG00019129 NA other downstream 1224516 4932349 ~ 4940667 (-)
AMCG00019109 NA other downstream 1935192 4220443 ~ 4229991 (-)
G31130 NA other downstream 3986533 2177980 ~ 2178650 (-)
G31082 NA other downstream 4081912 1932341 ~ 2083271 (-)
AMCG00019165 NA other upstream 489414 6680625 ~ 6684301 (-)
AMCG00019209 LOC106600477 other upstream 2655940 8847151 ~ 8901878 (-)
AMCG00019213 NA other upstream 3059941 9251152 ~ 9434114 (-)
AMCG00019272 ppp4r1,LOC106579644,LOC106590337 other upstream 5660897 11852108 ~ 11885571 (-)
AMCG00019284 NA other upstream 6221943 12413154 ~ 12423320 (-)

Expression


Co-expression Network