AMCG00019158


Basic Information

Item Value
gene id AMCG00019158
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 6157865 ~ 6161502 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019158
CACCCTCCCTCCTCCCACTATCAAGTGGACTCTATAAATTCCCCCAGAACGTCTGTGTGTCAGTAGATACAGCAGCAGACGGCCAAGGTCTCAATCATGATGAGGGAATTCAAGAGAAAGGCGTTCTGGAGGGCAGTGCTGGCTGAACTTATAGGCATGACTGTGTTTATTTTCGTAAGCATAACAGCTGCTATAGGGCATCCCGAGGCTTCTGGTCCAGAGCAGGAGGTGAAGGTGTCCCTGACCTTTGGCTTGGCCATTGCCACACTGGCTCAGAGTCTGGGtcacatcagtggagcacaCTTGAACCCGGCCGTGACTCTGGGCTTGTTGGCGAGCTGCCAGATCAGTATCTTCAAGGCGGTCACATACATCATGGCACAGCTGCTGGGGGCGTCCATGGCCAGTGGGATTGTATATGGAGTCAGGCCACAAAATACAACCGCACTTGGTGTCAATGCTCTCAACAAGGTGAATGCCGGTCAAGCTGTTGGTATCGAGCTTCTGGTCACCTTGCAGCTGGTCCTCTGTGTCTTAGCAGCCACTGATAAGAGAAGAAACGATGTCACGGGCTCAGCACCCTTGGCCATTGGGCTCTCCGTGAGCCTCGGACATCTCGCTGCCATCAGCTTCACAGGCTGTGGGATGAACCCTGCCCGGTCGTTCGGTCCGGCTCTGATCATGAACGACTTCACAAACCACTGGgTTTACTGGGTTGGTCCCATGGCTGGAGGTGTCGCTGCTGCCCTTATTTATGACTTCCTCCTGTGTCCCAAACTGGATGACCTGACTGACCGTGTCAAGGTGTTGAAAAACGGTCAAGACGGCGAATACGATGTCAGCGCGCCAGACGACTCCACTGGAGTAGAAATGGCATCGAAATAAAAGACTCTGTGACTCAGTACCTTCTGATTACTCTAGAAATGTAACAATTCACttgtaaatattatgttttaagaaagtGACATagtcactgtatttttgtaaggaaaatatgtaaatgtcagCCTTAATTTAGTTGTGCATCATTGTCAGTTCATCTATTAAACAGAGTGGAagcaaaaagtacattttaatccCTTAAATTCTTGAGAACTGATCAGacaacttgtttttgtttttaatattggcctttaaatacattgtacatgttttgctcatatatatatacatatatcatataCAAACACTGCTCCCTTGTTTTCTAAGacttttgataaataaaatacctaCTGATATCTGACAGACTATTGTGTTtgattcagattatttttatttgcccATGTTTTTCCAACAGTGAAAAACATATCCTGCACTGTGACTACAATTGTGCTTCAGTGACATGTTTCTCAACATTAAAGCTGTGTTGACCTTCTGTCCTTATAAATCAATGTCTGGTGATTTATATGAACTAAAATGTAGCCTTTGCTTGGCAAAGAGGG

Function

GO:

id name namespace
GO:0035378 carbon dioxide transmembrane transport biological_process
GO:0006833 water transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015250 water channel activity molecular_function
GO:0035379 carbon dioxide transmembrane transporter activity molecular_function

KEGG:

id description
K09864 AQP1; aquaporin-1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019158 True 1442 mRNA 0.45 4 6157865 6161502

Neighbor

gene id symbol gene type direction distance location
AMCG00019155 NA coding downstream 12401 6126193 ~ 6145464 (-)
AMCG00019153 NA coding downstream 195718 5947889 ~ 5962147 (-)
AMCG00019152 NA coding downstream 384168 5755405 ~ 5773697 (-)
AMCG00019150 LOC104941974 coding downstream 485879 5635702 ~ 5671986 (-)
AMCG00019149 zbtb47,zbtb47b,LOC107701620,LOC107733141,LOC107754947,LOC107670424 coding downstream 569523 5582228 ~ 5588342 (-)
AMCG00019157 NA coding upstream 3681 6165183 ~ 6191211 (-)
AMCG00019161 myl3,LOC107660402,LOC107567878,LOC107711693,LOC107593749,LOC107727541 coding upstream 273010 6434512 ~ 6451611 (-)
AMCG00019166 tmie,LOC107660419,LOC106569331,LOC102776014 coding upstream 454148 6615650 ~ 6632844 (-)
AMCG00019164 NA coding upstream 508451 6669953 ~ 6678328 (-)
AMCG00019170 NA coding upstream 615902 6777404 ~ 6781144 (-)
G31845 NA non-coding downstream 171069 5964264 ~ 5986796 (-)
G31833 NA non-coding downstream 230272 5923714 ~ 5927593 (-)
G31831 NA non-coding downstream 255228 5902372 ~ 5902637 (-)
G31829 NA non-coding downstream 340432 5817076 ~ 5817433 (-)
G31826 NA non-coding downstream 354950 5784768 ~ 5802915 (-)
G31875 NA non-coding upstream 2487 6163989 ~ 6164537 (-)
G31878 NA non-coding upstream 101135 6262637 ~ 6262838 (-)
G31882 NA non-coding upstream 103189 6264691 ~ 6265136 (-)
G31931 NA non-coding upstream 526001 6687503 ~ 6687816 (-)
G31932 NA non-coding upstream 527358 6688860 ~ 6689516 (-)
AMCG00019128 gorasp1,LOC103377203 other downstream 1171481 4941059 ~ 4986384 (-)
AMCG00019129 NA other downstream 1217198 4932349 ~ 4940667 (-)
AMCG00019109 NA other downstream 1927874 4220443 ~ 4229991 (-)
G31130 NA other downstream 3979215 2177980 ~ 2178650 (-)
G31082 NA other downstream 4074594 1932341 ~ 2083271 (-)
AMCG00019165 NA other upstream 519123 6680625 ~ 6684301 (-)
AMCG00019209 LOC106600477 other upstream 2685649 8847151 ~ 8901878 (-)
AMCG00019213 NA other upstream 3089650 9251152 ~ 9434114 (-)
AMCG00019272 ppp4r1,LOC106579644,LOC106590337 other upstream 5690606 11852108 ~ 11885571 (-)
AMCG00019284 NA other upstream 6251652 12413154 ~ 12423320 (-)

Expression


Co-expression Network