AMCG00019161 (myl3,LOC107660402,LOC107567878,LOC107711693,LOC107593749,LOC107727541)


Basic Information

Item Value
gene id AMCG00019161
gene name myl3,LOC107660402,LOC107567878,LOC107711693,LOC107593749,LOC107727541
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 6434512 ~ 6451611 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019161
ATGGCACCAAAGAAGAAAGAGGAGCCCCCCAAGCCAGCACCCAAGGCACCCGAGCCCGAGCCACCAAAAGAGCCAGAGTTTGACCCCAAAAGTGTAGCGaTTGAATTCACAGCTGAGCAAATTGAAGATTTTAAGGAGGCTTTCTCCCTGTTTGACAGAACaccaaataatgaaatgaaaatcacGTACGCTCAGTGTGGAGATCTGATGAGAGCTCTGGGTCAGAACCCGACCAACGCCGAGGTCATGAAGGTGCTGGGCAGCCCGAAGGCAGAAGAAATGAACTCCAAAATGATGGACTTTGAGACGTTCTTGCCCATGCACCAACACATCTGCAAGGCCAAGGATCGGGGCACCTTCGAGGACTTTGTGGAGGGACTGAGGGTGTTCGATAAGGAGGGGAACGGCACAGTGATGGGCGCTGAGCTGCGCCACGTGCTGGCCACACTGGgagagaaaatgagagaaGATGAGGTTGATCAACTCATGGTGGGCCAAGAAGACGCCAATGGATGCATAAACTATGAAGCGTTTGTCAAGCACATCATGGCAGGATAG

Function

symbol description
myl3 Enables actin monomer binding activity. Involved in several processes, including cardiac muscle contraction; regulation of the force of heart contraction; and ventricular cardiac muscle tissue morphogenesis. Located in A band and I band. Implicated in hypertrophic cardiomyopathy 8.

NR:

description
PREDICTED: myosin light chain 4-like isoform X1

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K12749 MYL3; myosin light chain 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019161 True 558 mRNA 0.52 6 6434512 6451611

Neighbor

gene id symbol gene type direction distance location
AMCG00019157 NA coding downstream 243301 6165183 ~ 6191211 (-)
AMCG00019158 NA coding downstream 273010 6157865 ~ 6161502 (-)
AMCG00019155 NA coding downstream 289048 6126193 ~ 6145464 (-)
AMCG00019153 NA coding downstream 472365 5947889 ~ 5962147 (-)
AMCG00019152 NA coding downstream 660815 5755405 ~ 5773697 (-)
AMCG00019166 tmie,LOC107660419,LOC106569331,LOC102776014 coding upstream 164039 6615650 ~ 6632844 (-)
AMCG00019164 NA coding upstream 218342 6669953 ~ 6678328 (-)
AMCG00019170 NA coding upstream 325793 6777404 ~ 6781144 (-)
AMCG00019174 atg9b,LOC106599848,LOC107100460,LOC106569346 coding upstream 417903 6869514 ~ 6897553 (-)
AMCG00019175 asic3,LOC107383864,LOC106964295 coding upstream 492438 6944049 ~ 6963885 (-)
G31882 NA non-coding downstream 169376 6264691 ~ 6265136 (-)
G31878 NA non-coding downstream 171674 6262637 ~ 6262838 (-)
G31875 NA non-coding downstream 269975 6163989 ~ 6164537 (-)
G31845 NA non-coding downstream 447716 5964264 ~ 5986796 (-)
G31833 NA non-coding downstream 506919 5923714 ~ 5927593 (-)
G31931 NA non-coding upstream 235892 6687503 ~ 6687816 (-)
G31932 NA non-coding upstream 237249 6688860 ~ 6689516 (-)
G31933 NA non-coding upstream 238225 6689836 ~ 6692303 (-)
G31993 NA non-coding upstream 772978 7224589 ~ 7224997 (-)
G31997 NA non-coding upstream 839240 7290851 ~ 7291130 (-)
AMCG00019128 gorasp1,LOC103377203 other downstream 1448128 4941059 ~ 4986384 (-)
AMCG00019129 NA other downstream 1493845 4932349 ~ 4940667 (-)
AMCG00019109 NA other downstream 2204521 4220443 ~ 4229991 (-)
G31130 NA other downstream 4255862 2177980 ~ 2178650 (-)
G31082 NA other downstream 4351241 1932341 ~ 2083271 (-)
AMCG00019165 NA other upstream 229014 6680625 ~ 6684301 (-)
AMCG00019209 LOC106600477 other upstream 2395540 8847151 ~ 8901878 (-)
AMCG00019213 NA other upstream 2799541 9251152 ~ 9434114 (-)
AMCG00019272 ppp4r1,LOC106579644,LOC106590337 other upstream 5400497 11852108 ~ 11885571 (-)
AMCG00019284 NA other upstream 5961543 12413154 ~ 12423320 (-)

Expression


Co-expression Network