AMCG00019165


Basic Information

Item Value
gene id AMCG00019165
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 6680625 ~ 6684301 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019165
TTTTAGTTTACATTTGATACACTTCCCAGCACTACAATTCCCAGTTTGCTAAGCGACAAAGACCGACTCGCCGTGTTGCTTTACTCTTTCTTTGCTTCACTGATATTTCACATTaagctaatttatttaaagtagaATTATATTTGTCACGTACATTCTAGTAATGCACacgaataatatatatttgttagaTAAAAATAGTTATGCAAAAACTAGGTCACCCGACGTTTTCCGGTATTGACGTCACACAAAAGCCAGCTATTTTCCCACCGTGAAGACTCTGTGACACTTGTACTGCCAAGAAGCCTTTACAGGAAACTGTGCTGTACAGAGCCAAGTCCCGGGAGTGTTTAATTCAACAAAACTGTCTGTAAAACAAGTAATCATGTCTGTTGGTGAGACTGTGGCTCCAGCCTACACAGAGGATTCCCATTCCTCTAAATTTATGAGGAAGGCAAAGGAATCTCCCTTTGTTCCTGCAGGCATGGTTGGGTTTTGCGGAATCGTTGCCTATGGCTTGTACAAACTGAGGACTCGGGGAGACACCAAAATGTCCGTTCACCTCATTCACATGCGAGTTGGAGCTCAGGGGTTTGTTGTGGGAGCCATGACTCTGGgAGTTATTTACTCAATGTACAATGAATACATTGTCAAGCCACGGAAGTAAGCAAAAACATCCTGAAAGACTCTGGACACTATTTGTGCACTTTTAGCTTCCTGTGTTCATTTAATTGCACCTCATATTAAGGTGTTTGTCTTTTCTAAGTTTAAAATGGGACAAAAAATGTCCCATAGTCTGTACACCATTGCACTCAATTTACCGATTTAGATTATCCCTTGTCATATCCACACTCtcttcaaaacaatatttgatccATGGACAAAGcagatcagttttatttttttctatgagTAAAATGTTTGCATAGAAATCTAAGTAAAAGAACAAGAAATACTTCATCAAATTCATGACTTAACTACTGTTGCATTAGgaaaaaatgtgattggcttTACTATATAGGCTACAGTGCATTTCTTTctgaaatgcaatgttttaattgtaatggaTAAGTAAGTGCCAGGAATGCTTTGCCTCTTTTGCTATATTATTAAGTGCCATGAAAAGGGAATGAAATCCAAGTGACAAGTATAGGAAGGTACACaaagtataatataaattataaaatatttatttttttagtcttTGTTCTAAgattaagtataatttaatgGTTGACTGTCATATCTTTCTTCAATAAATCCTGAGTTATGTAGtaaa
>TU39965
AAAGCCAGCTATTTTCCCACCGTGAAGACTCTGTGACACTTGTACTGCCAAGAAGCCTTTACAGGAAACTGTGCTGTACAGAGCCAAGTCCCGGGAGTGTTTAATTCAACAAAACTGTCTGTAAAACAAGTAATCATGTCTGTTGGTGAGACTGTGGCTCCAGCCTACACAGAGGATTCCCATTCCTCTAAATTTATGAGGAAGGCAAAGGAATCTCCCTTTGTTCCTGCAGGCATGGTTGGGTTTTGCGGAATCGTTGCCTATGGCTTGTACAAACTGAGGACTCGGGGAGACACCAAAATGTCCGTTCACCTCATTCACATGCGAGTTGGAGCTCAGGGGTTTGTTGTGGGAGCCATGACTCTGGgAGTTATTTACTCAATGTACAATGAATACATTGTCAAGCCACGGAAGTAAGCAAAAACATCCTGAAAGACTCTGGACACTATTTGTGCACTTTTAGCTTCCTGTGTTCATTTAATTGCACCTCATATTAAGGTGTTTGTCTTTTCTAAGTTTAAAATGGGACAAAAAATGTCCCATAGTCTGTACACCATTGCACTCAATTTACCGATTTAGATTATCCCTTGTCATATCCACACTCtcttcaaaacaatatttgatccATGGACAAAGcagatcagttttatttttttctatgagTAAAATGTTTGCATAGAAATCTAAGTAAAAGAACAAGAAATACTTCATCAAATTCATGACTTAACTACTGTTGCATTAGgaaaaaatgtgattggcttTACTATATAGGCTACAGTGCATTTCTTTctgaaatgcaatgttttaattgtaatggaTAAGTAAGTGCCAGGAATGCTTTGCCTCTTTTGCTATATTATTAAGTGCCATGAAAAGGGAATGAAATCCAAGTGACAAGTATAGGAAGGTACACaaagtataatataaattataaaatatttatttttttagtcttTGTTCTAAgattaagtataatttaatgGTTGACTGTCATATCTTTCTTCAATAAATCCTGAGTTATGTAGtaaatgtttgtctgttttttttttttctgtcacatGGGTAGTTTGAAGCATTTGGACACGTAGCAGGAAAAACATCTCC

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019165 True 1279 mRNA 0.36 4 6680700 6684301
TU39965 False 1104 lncRNA 0.37 4 6680625 6684051

Neighbor

gene id symbol gene type direction distance location
AMCG00019164 NA coding downstream 2297 6669953 ~ 6678328 (-)
AMCG00019166 tmie,LOC107660419,LOC106569331,LOC102776014 coding downstream 47781 6615650 ~ 6632844 (-)
AMCG00019161 myl3,LOC107660402,LOC107567878,LOC107711693,LOC107593749,LOC107727541 coding downstream 229014 6434512 ~ 6451611 (-)
AMCG00019157 NA coding downstream 489414 6165183 ~ 6191211 (-)
AMCG00019158 NA coding downstream 519123 6157865 ~ 6161502 (-)
AMCG00019170 NA coding upstream 93103 6777404 ~ 6781144 (-)
AMCG00019174 atg9b,LOC106599848,LOC107100460,LOC106569346 coding upstream 185213 6869514 ~ 6897553 (-)
AMCG00019175 asic3,LOC107383864,LOC106964295 coding upstream 259748 6944049 ~ 6963885 (-)
AMCG00019176 NA coding upstream 323483 7007784 ~ 7014100 (-)
AMCG00019177 asic1c,asic3,LOC106930524,LOC106599832,LOC106964295 coding upstream 494325 7178626 ~ 7179255 (-)
G31882 NA non-coding downstream 415489 6264691 ~ 6265136 (-)
G31878 NA non-coding downstream 417787 6262637 ~ 6262838 (-)
G31875 NA non-coding downstream 516088 6163989 ~ 6164537 (-)
G31845 NA non-coding downstream 693829 5964264 ~ 5986796 (-)
G31833 NA non-coding downstream 753032 5923714 ~ 5927593 (-)
G31931 NA non-coding upstream 3202 6687503 ~ 6687816 (-)
G31932 NA non-coding upstream 4559 6688860 ~ 6689516 (-)
G31933 NA non-coding upstream 5535 6689836 ~ 6692303 (-)
G31993 NA non-coding upstream 540288 7224589 ~ 7224997 (-)
G31997 NA non-coding upstream 606550 7290851 ~ 7291130 (-)
AMCG00019128 gorasp1,LOC103377203 other downstream 1694241 4941059 ~ 4986384 (-)
AMCG00019129 NA other downstream 1739958 4932349 ~ 4940667 (-)
AMCG00019109 NA other downstream 2450634 4220443 ~ 4229991 (-)
G31130 NA other downstream 4501975 2177980 ~ 2178650 (-)
G31082 NA other downstream 4597354 1932341 ~ 2083271 (-)
AMCG00019209 LOC106600477 other upstream 2162850 8847151 ~ 8901878 (-)
AMCG00019213 NA other upstream 2566851 9251152 ~ 9434114 (-)
AMCG00019272 ppp4r1,LOC106579644,LOC106590337 other upstream 5167807 11852108 ~ 11885571 (-)
AMCG00019284 NA other upstream 5728853 12413154 ~ 12423320 (-)
AMCG00019312 NA other upstream 6484135 13168436 ~ 13188292 (-)

Expression


Co-expression Network