AMCG00019166 (tmie,LOC107660419,LOC106569331,LOC102776014)


Basic Information

Item Value
gene id AMCG00019166
gene name tmie,LOC107660419,LOC106569331,LOC102776014
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 6615650 ~ 6632844 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019166
ATGGCCCCTGAGGGACTGGCCCTGGGCGGTGACCGGCGGAGTGGAAAAGCATTGCTCTGTGGGAGGAAGCCACAACACGGCGACAGATGCAAGGGTGCTGTCAGCAGCTTGCTGGCTATCAATCACCAGGGCCATTGTGGTCCTCCCTTCACGGAGAGcgagagtgggagagggagagggagaggggagaagaTGGCGTGGGATCTGCTCCCGTGCTCTCTGGCATCGGTGCTGGGCTCCGTGTTTGTGCTGCTTTCCCTGCACCTGGCGCTGGTGCTGCCACAGATCATAGACCCCGAGGAGGCTGGGGGCTATGAGTTTAAAGTCATCCCTGAGGTACCGATGTCCAGCTGTGATACAGAACACTACATGTCCCTGCTGGACATCACGCCAGACTGTCCTCAAATGTCCCACtttgGTACCTCGAGCCCCCCCAGGACGAAGCCGGCCCCTGTGACGTCGGAGACAGTTGTTTTCTGGGGGCTCCGGTTATGGCAAGTCATAGGAGTTTTTTCAATGTTCGTTCTGGCAGTTATAATAACCCTGTGCTGCATCTTCAAGTGCCGAATCCCCAGAACGAAAAAGGAGATTGAGGCACGGCACGTGCAGAGACTGGCAGCGAAGAAATACGCCAATACGCTAGAAAACGTTCCTCCTCTGAATGAACTCACAGAAATACCAGGAGCCGCCGCAGACCCTACTTCCCTCCACACTGTTTCTGGTCAGGTCCAAGCTAGGAGTGTCAACCCTCTTCCTGTTGTGAAAGAGGAAGACGAGATGGCGCTCCATGGGAATTAA

Function

symbol description
tmie Acts upstream of or within posterior lateral line neuromast primordium migration; sensory organ development; and sensory perception of sound. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain and otic vesicle. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 6 and sensorineural hearing loss. Orthologous to human TMIE (transmembrane inner ear).

NR:

description
PREDICTED: transmembrane inner ear expressed protein-like

GO:

id name namespace
GO:0048752 semicircular canal morphogenesis biological_process
GO:0007605 sensory perception of sound biological_process
GO:0048884 neuromast development biological_process
GO:0048920 posterior lateral line neuromast primordium migration biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K23907 TMIE; transmembrane inner ear expressed protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019166 True 798 mRNA 0.56 5 6615650 6632844

Neighbor

gene id symbol gene type direction distance location
AMCG00019161 myl3,LOC107660402,LOC107567878,LOC107711693,LOC107593749,LOC107727541 coding downstream 164039 6434512 ~ 6451611 (-)
AMCG00019157 NA coding downstream 424439 6165183 ~ 6191211 (-)
AMCG00019158 NA coding downstream 454148 6157865 ~ 6161502 (-)
AMCG00019155 NA coding downstream 470186 6126193 ~ 6145464 (-)
AMCG00019153 NA coding downstream 653503 5947889 ~ 5962147 (-)
AMCG00019164 NA coding upstream 37109 6669953 ~ 6678328 (-)
AMCG00019170 NA coding upstream 144560 6777404 ~ 6781144 (-)
AMCG00019174 atg9b,LOC106599848,LOC107100460,LOC106569346 coding upstream 236670 6869514 ~ 6897553 (-)
AMCG00019175 asic3,LOC107383864,LOC106964295 coding upstream 311205 6944049 ~ 6963885 (-)
AMCG00019176 NA coding upstream 374940 7007784 ~ 7014100 (-)
G31882 NA non-coding downstream 350514 6264691 ~ 6265136 (-)
G31878 NA non-coding downstream 352812 6262637 ~ 6262838 (-)
G31875 NA non-coding downstream 451113 6163989 ~ 6164537 (-)
G31845 NA non-coding downstream 628854 5964264 ~ 5986796 (-)
G31833 NA non-coding downstream 688057 5923714 ~ 5927593 (-)
G31931 NA non-coding upstream 54659 6687503 ~ 6687816 (-)
G31932 NA non-coding upstream 56016 6688860 ~ 6689516 (-)
G31933 NA non-coding upstream 56992 6689836 ~ 6692303 (-)
G31993 NA non-coding upstream 591745 7224589 ~ 7224997 (-)
G31997 NA non-coding upstream 658007 7290851 ~ 7291130 (-)
AMCG00019128 gorasp1,LOC103377203 other downstream 1629266 4941059 ~ 4986384 (-)
AMCG00019129 NA other downstream 1674983 4932349 ~ 4940667 (-)
AMCG00019109 NA other downstream 2385659 4220443 ~ 4229991 (-)
G31130 NA other downstream 4437000 2177980 ~ 2178650 (-)
G31082 NA other downstream 4532379 1932341 ~ 2083271 (-)
AMCG00019165 NA other upstream 47781 6680625 ~ 6684301 (-)
AMCG00019209 LOC106600477 other upstream 2214307 8847151 ~ 8901878 (-)
AMCG00019213 NA other upstream 2618308 9251152 ~ 9434114 (-)
AMCG00019272 ppp4r1,LOC106579644,LOC106590337 other upstream 5219264 11852108 ~ 11885571 (-)
AMCG00019284 NA other upstream 5780310 12413154 ~ 12423320 (-)

Expression


Co-expression Network