AMCG00019167 (LOC106569335)


Basic Information

Item Value
gene id AMCG00019167
gene name LOC106569335
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 6704357 ~ 6705892 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019167
ATGGGCTATCTAGTACCAGTTCTCCTCACTTTGTTGATGTGTATTCTAGGGGGTCTCTACCTCTTGGGAGCTTTTCGCAAGAGACGCCCTGGGGAGCCACCACTGGACAGGGGCCCAATACCTTGGCTGGGACATGTTCTGGACTTCCGAAGGGACACCTCTAAGTTTCTtcagaaaatgaagaagaaacatGGGGATATTTTCACTGTGCAGCTCGGTGGCTATTACTTTACCTTTCTGATGGATCCACTGTCCTTCGGAACTGTGGTCAAGGAATCCAGAGGAAAGCTGGATTTTACCAAATTTGCTGAGCAACTGGTGGCAAGAGTTTTTGGTTACTATGCCATTGAGAATGATCACAAATTCATGCAGGCTTCAAGCAACAAACACCTAATGGGAGACGGGTTAGTAGTCATGACCCAGGCGATGATGACTAACCTTCAGAACTTGATGCTACACAGTGTGGGTTCAGAAAAATCTGTGGGAAAATGGAATGAAGATGGACTATTTAACTATAGCTACAACATCGTATTCAGAGCTGGCTACCTGGCTCTTTATGGCAATGAGACGCCCAAAGCATCGGGCAGCACGGAGAAAGCCAAAGAGAAGGACCGGATTCAGTCTGACAAACTGTTCTATGAGTTCAGAAAGTATGACAAACTGTTCCCCAAACTGGCCTACGGTGTGCTGCCACCCAAGGAGAAGATAGAAGCCGAAAGGCTCAAGAGGCTATTCTGGAATATGCTGTCTGTGAAGAACGTGAATGAGAAGGACAACATCAGTGGCTGGGTGATGGAGCAGCAGCAGATCAGAGCTGAGAACGGCATGGAGGAGTCCATGCAGGACAGGTACATGTTCCTGCTCCTGTGGGCGTCTCAGGGCAACACGGGCCCGGCGGCCTTCTGGCTTCTCCTGTTCCTCATGAAGCACCCAGAAGCGATGAAGGCAGTGCAAAAGGAGGTGGAGGATGTCTTGAAGGAGACGGGGCAGGAGGTGACACCGGGGGGGGCACTGATCAACCTGACGAGAGACATGCTGTTGAAGACCCCCATCCTGGACAGCACAGTGGAGGAGACGCTTCGGCTCATAGCGGCCCCCGTCCTGACCAGGGCTGTTTTGCAGGACATGACCCTGAAGATGGCAGACGGGAGAGAGTATAGCCTCCGGGAAGGGGATCGAGTGGCTCTGTTTCCGTATGCTGCTGTTCATATGGACCCCGAGGTCCACCCCGACCCCCAGAGCTTTAAATATGACCGGTTCCTAAACCCTGACGGTACCAAAAAGACTGATTTCTACAAAAATGGTAAGAAGCTGAAATACTATAGCATGCCCTGGGGTGCAGGAGTGACTATGTGTCCTGGTCGCTTCTTTGCAACAAACGAGCTCAAGCAGTATGTCTTTTTAATGCTCACATATTTTGAGTTTGAGTTGAAGAACCCTGCGGAAGAAATCCCCCCCATTGACATCACACGCTGGGGGTTTGGGTCCATGCAACCCACCAGAGACATCCAGTTTAAATACCGACTACGCTTTTAG

Function

NR:

description
PREDICTED: 5-beta-cholestane-3-alpha,7-alpha-diol 12-alpha-hydroxylase-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K07431 CYP8B1; sterol 12-alpha-hydroxylase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019167 True 1536 mRNA 0.50 1 6704357 6705892

Neighbor

gene id symbol gene type direction distance location
AMCG00019169 NA coding upstream 13273 6689915 ~ 6691084 (+)
AMCG00019163 NA coding upstream 36212 6606972 ~ 6668145 (+)
AMCG00019162 pth1r,LOC107671674,LOC106599896,LOC107660418 coding upstream 137864 6485078 ~ 6566493 (+)
AMCG00019160 crhr2,LOC102776588,LOC106599903 coding upstream 324012 6355260 ~ 6380345 (+)
AMCG00019159 crhr2 coding upstream 392237 6311748 ~ 6312120 (+)
AMCG00019168 NA coding downstream 63351 6769243 ~ 6770217 (+)
AMCG00019171 NA coding downstream 117343 6823235 ~ 6832585 (+)
AMCG00019172 NA coding downstream 191926 6897818 ~ 6907983 (+)
AMCG00019173 cdk5,LOC106599847 coding downstream 202241 6908133 ~ 6917381 (+)
AMCG00019178 NA coding downstream 653711 7359603 ~ 7379672 (+)
G31930 NA non-coding upstream 12077 6691722 ~ 6692280 (+)
G31915 NA non-coding upstream 25969 6678165 ~ 6678388 (+)
G31914 NA non-coding upstream 31180 6672898 ~ 6673177 (+)
G31894 myl13,myl3,LOC107660402,LOC107567878,LOC107711693,LOC107593749 non-coding upstream 267650 6434199 ~ 6436707 (+)
G31893 NA non-coding upstream 286508 6417481 ~ 6417849 (+)
G31947 NA non-coding downstream 113873 6819765 ~ 6820035 (+)
G31992 NA non-coding downstream 518740 7224632 ~ 7224997 (+)
G32010 agap3,LOC107383869 non-coding downstream 725788 7431680 ~ 7431944 (+)
G32048 NA non-coding downstream 914612 7620504 ~ 7620812 (+)
G32113 NA non-coding downstream 1465753 8171645 ~ 8171861 (+)
AMCG00019154 ghrhrb,LOC107704523,LOC106560417,LOC107717144,LOC107556991 other upstream 764760 5930704 ~ 5939597 (+)
AMCG00019111 phlpp1,LOC106599727,LOC103135813,LOC101477421,LOC106925929,LOC102225687,LOC103479552 other upstream 2336154 4319596 ~ 4368203 (+)
AMCG00019100 crem,crema,LOC105019435,LOC106578540,LOC108428923,LOC103396770 other upstream 3493467 3190612 ~ 3210890 (+)
AMCG00019096 LOC107727496 other upstream 3604186 3094452 ~ 3100171 (+)
AMCG00019089 NA other upstream 4086305 2520104 ~ 2618052 (+)
G32005 NA other downstream 714609 7420501 ~ 7421083 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other downstream 1639563 8345455 ~ 8384592 (+)
G32286 NA other downstream 2555482 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other downstream 2623587 9329479 ~ 9348819 (+)
G32293 armc4 other downstream 2664006 9369898 ~ 9628662 (+)

Expression


Co-expression Network